BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3294.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776109.1| multidrug resistance B (translocase) transme... 874 0.0 ref|YP_001889255.1| EmrB/QacA subfamily drug resistance transpor... 663 0.0 ref|YP_004230245.1| EmrB/QacA subfamily drug resistance transpor... 660 0.0 ref|YP_003910813.1| drug resistance transporter EmrB/QacA subfam... 658 0.0 ref|YP_554176.1| major facilitator superfamily multidrug efflux ... 654 0.0 >ref|YP_003776109.1| multidrug resistance B (translocase) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64201.1| multidrug resistance B (translocase) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 874 bits (2257), Expect = 0.0, Method: Composition-based stats. Identities = 501/509 (98%), Positives = 505/509 (99%) Query: 2 ATTPPKPYTPPPPLTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTW 61 + TP + YTPPPPLTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTW Sbjct: 4 SPTPSQAYTPPPPLTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTW 63 Query: 62 VITSFAAANAISIPLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQG 121 VITSFAAANAISIPLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQG Sbjct: 64 VITSFAAANAISIPLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQG 123 Query: 122 LVAGPMVPLSQSLLLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYI 181 LVAGPMVPLSQSLLLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYI Sbjct: 124 LVAGPMVPLSQSLLLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYI 183 Query: 182 NIPVGLIAAGVTLAIYRSRETPIHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFSSPT 241 NIPVGLIAAGVTLAIYRSRETP HKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWF+SPT Sbjct: 184 NIPVGLIAAGVTLAIYRSRETPTHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFASPT 243 Query: 242 IVTLGIIALIAFAYFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQ 301 IVTLGIIALIAFAYFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQ Sbjct: 244 IVTLGIIALIAFAYFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQ 303 Query: 302 WLQQYLGYRSIDSGLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSR 361 WLQQYLGYRSIDSGLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSR Sbjct: 304 WLQQYLGYRSIDSGLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSR 363 Query: 362 YNLQVDQMTVILPTLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGT 421 YNLQVDQMTVILPTLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGT Sbjct: 364 YNLQVDQMTVILPTLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGT 423 Query: 422 SISTTAWNNRTIMHHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAA 481 SISTTAWNNR+IMHHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAA Sbjct: 424 SISTTAWNNRSIMHHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAA 483 Query: 482 MLGINDIFYVSAVIFIVIIPLIWIIKPSK 510 MLGINDIFYVSAVIFIVIIPLIWIIKPSK Sbjct: 484 MLGINDIFYVSAVIFIVIIPLIWIIKPSK 512 >ref|YP_001889255.1| EmrB/QacA subfamily drug resistance transporter [Burkholderia phytofirmans PsJN] gb|ACD19885.1| drug resistance transporter, EmrB/QacA subfamily [Burkholderia phytofirmans PsJN] Length = 543 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 342/494 (69%), Positives = 419/494 (84%) Query: 15 LTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTWVITSFAAANAISI 74 L G LVL T++V+LA FMNVLD+SIANVAIPTISGNLGVSVDEGTWVIT FAAANA+SI Sbjct: 37 LKGGQLVLATIAVALATFMNVLDTSIANVAIPTISGNLGVSVDEGTWVITVFAAANAVSI 96 Query: 75 PLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQGLVAGPMVPLSQSL 134 PLTGWLTQR+G V+LFV ++L+FVLASWLCG+APTLPILL ARV QG VAGP++PLSQ++ Sbjct: 97 PLTGWLTQRIGQVKLFVGAILMFVLASWLCGIAPTLPILLLARVFQGAVAGPLIPLSQAI 156 Query: 135 LLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYINIPVGLIAAGVTL 194 LLG+YPK KSS AL+LW MTA V P+AGPALGGWITDSY+W WIFYINIPVG+ AAGVT Sbjct: 157 LLGSYPKEKSSTALSLWAMTATVGPIAGPALGGWITDSYSWSWIFYINIPVGIFAAGVTW 216 Query: 195 AIYRSRETPIHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFSSPTIVTLGIIALIAFA 254 IYR+RE+P K PID +GL LL+TWVA+ QIMLDKGKDLDWFSSP IV LGI ALI+FA Sbjct: 217 MIYRTRESPTRKPPIDMVGLGLLITWVASLQIMLDKGKDLDWFSSPVIVILGITALISFA 276 Query: 255 YFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQWLQQYLGYRSIDS 314 +F+VWEL D+P+VDLRLF +RNF GGTIAIS+ YGVFFGNLV+LPQW+Q+YL YRS+D+ Sbjct: 277 FFLVWELTEDNPIVDLRLFQQRNFLGGTIAISVAYGVFFGNLVLLPQWMQEYLNYRSVDA 336 Query: 315 GLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSRYNLQVDQMTVILP 374 GL TAP+GIFAVIL P++GR LP DAR +AT +FIGFAIVF++RS+Y +++D ++LP Sbjct: 337 GLVTAPLGIFAVILAPVMGRVLPRSDARVIATMAFIGFAIVFYMRSKYVIEIDTWHLVLP 396 Query: 375 TLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTAWNNRTIM 434 TLLQGIP A+FFVPLT ++LSG PP +IPAAAGLS+F RVFCGAVGTS++ WNNRT++ Sbjct: 397 TLLQGIPMALFFVPLTAIILSGQPPGKIPAAAGLSNFARVFCGAVGTSVAGNEWNNRTVL 456 Query: 435 HHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAAMLGINDIFYVSAV 494 HHA+LTE A+ +P + +++ S L +N + + + T+ QAAM+G+NDIF++SAV Sbjct: 457 HHARLTEQASINNPTFNQQIDSTQSLLHMNPQSAHALFDFTVNTQAAMMGLNDIFFISAV 516 Query: 495 IFIVIIPLIWIIKP 508 IFI+IIPLIWI +P Sbjct: 517 IFILIIPLIWITRP 530 >ref|YP_004230245.1| EmrB/QacA subfamily drug resistance transporter [Burkholderia sp. CCGE1001] gb|ADX57185.1| drug resistance transporter, EmrB/QacA subfamily [Burkholderia sp. CCGE1001] Length = 556 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 335/496 (67%), Positives = 420/496 (84%) Query: 15 LTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTWVITSFAAANAISI 74 L G LVL T++V+LA FMNVLD+SIANVAIPTISGNLGVSVDEGTWVIT FAAANA+SI Sbjct: 51 LQGGQLVLATIAVALATFMNVLDTSIANVAIPTISGNLGVSVDEGTWVITVFAAANAVSI 110 Query: 75 PLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQGLVAGPMVPLSQSL 134 PLTGWLTQR+G V+LFV ++L FVLASWLCG+APTLP+LL ARV QG VAGP++PLSQ++ Sbjct: 111 PLTGWLTQRIGQVKLFVGAILSFVLASWLCGIAPTLPMLLLARVFQGAVAGPLIPLSQAI 170 Query: 135 LLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYINIPVGLIAAGVTL 194 LLG+YPK K+S AL+LW MTA V P+AGPALGGWITDSY+W WIFYINIPVG+ AAGVT Sbjct: 171 LLGSYPKEKASTALSLWAMTATVGPIAGPALGGWITDSYSWSWIFYINIPVGIFAAGVTW 230 Query: 195 AIYRSRETPIHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFSSPTIVTLGIIALIAFA 254 IYR+RE+P K PID +GL LL+TWVA+ QIMLDKGKDLDWF+SP IV LG+ ALI+FA Sbjct: 231 MIYRTRESPTRKPPIDVVGLGLLITWVASLQIMLDKGKDLDWFASPVIVILGLTALISFA 290 Query: 255 YFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQWLQQYLGYRSIDS 314 +F+VWEL ++P+VDLRLF RNF GGT+AIS+ YGVFFGNLV+LPQW+Q+YL YRS+D+ Sbjct: 291 FFLVWELTEENPIVDLRLFRERNFLGGTVAISVAYGVFFGNLVLLPQWMQEYLNYRSVDA 350 Query: 315 GLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSRYNLQVDQMTVILP 374 GL TAP+G+FAVIL P++GR LP DAR ++T +F+GFAIVF++RS+Y +++D +++P Sbjct: 351 GLVTAPLGVFAVILAPVMGRVLPRSDARIISTMAFVGFAIVFYMRSKYVIEIDTWHLVIP 410 Query: 375 TLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTAWNNRTIM 434 TLLQGIP A+FFVPLT ++LSG PP +IPAAAGLS+FVRVFCGAVGTS++ AWNNRT++ Sbjct: 411 TLLQGIPMALFFVPLTAIILSGQPPHKIPAAAGLSNFVRVFCGAVGTSVAGNAWNNRTVL 470 Query: 435 HHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAAMLGINDIFYVSAV 494 HH +LTE A+ +P + +++ S L +N + + + T+ QAAM+G+NDIF+VSAV Sbjct: 471 HHERLTERASVDNPLFNQQIDSTQSLLHMNTQSAHALFDFTVNTQAAMMGLNDIFFVSAV 530 Query: 495 IFIVIIPLIWIIKPSK 510 IFI+IIPLIWI +P+K Sbjct: 531 IFILIIPLIWITRPAK 546 >ref|YP_003910813.1| drug resistance transporter EmrB/QacA subfamily [Burkholderia sp. CCGE1003] gb|ADN61522.1| drug resistance transporter, EmrB/QacA subfamily [Burkholderia sp. CCGE1003] Length = 529 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 340/496 (68%), Positives = 422/496 (85%) Query: 15 LTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTWVITSFAAANAISI 74 L G LVL T++V+LA FMNVLD+SIANVAIPTISGNLGVSVDEGTWVIT FAAANA+SI Sbjct: 23 LQGGQLVLATIAVALATFMNVLDTSIANVAIPTISGNLGVSVDEGTWVITVFAAANAVSI 82 Query: 75 PLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQGLVAGPMVPLSQSL 134 PLTGWLTQR+G V+LFV ++L+FVLASWLCG+APTLP+LL ARV QG VAGP++PLSQ++ Sbjct: 83 PLTGWLTQRIGQVKLFVGAILMFVLASWLCGIAPTLPVLLLARVFQGAVAGPLIPLSQAI 142 Query: 135 LLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYINIPVGLIAAGVTL 194 LLG+YPK K+S ALALW MTA V P+AGPALGGWITDSY+W WIFYINIPVGL AAGVT Sbjct: 143 LLGSYPKEKASTALALWAMTATVGPIAGPALGGWITDSYSWSWIFYINIPVGLFAAGVTW 202 Query: 195 AIYRSRETPIHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFSSPTIVTLGIIALIAFA 254 IYR+RE+P K PID +GL LL+TWVAA QIMLDKGKDLDWF+SP IV LG+ AL++FA Sbjct: 203 MIYRTRESPTRKPPIDVVGLGLLITWVAALQIMLDKGKDLDWFASPVIVILGLTALVSFA 262 Query: 255 YFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQWLQQYLGYRSIDS 314 +F++WEL ++P+VDLRLF RNF GGTIAIS+ YGVFFGNLV+LPQW+Q+YL YRS+D+ Sbjct: 263 FFLLWELTEENPIVDLRLFRERNFLGGTIAISVAYGVFFGNLVLLPQWMQEYLNYRSVDA 322 Query: 315 GLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSRYNLQVDQMTVILP 374 GL TAP+GIFAVIL P++GR LP DAR ++T +F+GFAIVF++RS+Y +++D ++LP Sbjct: 323 GLVTAPLGIFAVILAPVMGRVLPRSDARIISTMAFVGFAIVFYMRSKYVIEIDTWHLVLP 382 Query: 375 TLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTAWNNRTIM 434 TLLQGIP A+FFVPLT ++LSG PP++IPAAAGLS+FVRVFCGAVGTS++ AWNNRT++ Sbjct: 383 TLLQGIPMALFFVPLTSIILSGQPPQKIPAAAGLSNFVRVFCGAVGTSVAGNAWNNRTVL 442 Query: 435 HHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAAMLGINDIFYVSAV 494 HH +LTE A+ +P + +++ S L LN + + + +T QAAM+G+NDIF+VSAV Sbjct: 443 HHERLTERASVNNPLFNQQIDSTQSLLHLNTQSAHALFDFNVTTQAAMMGLNDIFFVSAV 502 Query: 495 IFIVIIPLIWIIKPSK 510 IFI+IIPLIWI +P+K Sbjct: 503 IFILIIPLIWITRPAK 518 >ref|YP_554176.1| major facilitator superfamily multidrug efflux transporter [Burkholderia xenovorans LB400] gb|ABE34826.1| major facilitator superfamily (MFS) multidrug efflux pump, EmrB/QacA subfamily [Burkholderia xenovorans LB400] Length = 525 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 338/494 (68%), Positives = 418/494 (84%) Query: 15 LTGANLVLGTLSVSLAVFMNVLDSSIANVAIPTISGNLGVSVDEGTWVITSFAAANAISI 74 L G LVL T++V+LA FMNVLD+SIANVAIPTISGNLGVSVDEGTWVIT FAAANA+SI Sbjct: 19 LKGGQLVLATIAVALATFMNVLDTSIANVAIPTISGNLGVSVDEGTWVITVFAAANAVSI 78 Query: 75 PLTGWLTQRLGAVRLFVTSVLLFVLASWLCGLAPTLPILLAARVLQGLVAGPMVPLSQSL 134 PLTGWLTQR+G V+LFV ++L+FVLASWLCG+APTLPILL AR+ QG VAGP++PLSQ++ Sbjct: 79 PLTGWLTQRIGQVKLFVGAILMFVLASWLCGIAPTLPILLVARIFQGAVAGPLIPLSQAI 138 Query: 135 LLGAYPKSKSSFALALWGMTAVVAPVAGPALGGWITDSYTWPWIFYINIPVGLIAAGVTL 194 LLG+YPK KSS ALALW MTA V P+AGPALGGWITDSY+W WIFYINIPVG+ AAGVT Sbjct: 139 LLGSYPKEKSSTALALWAMTATVGPIAGPALGGWITDSYSWSWIFYINIPVGIFAAGVTW 198 Query: 195 AIYRSRETPIHKLPIDKIGLALLVTWVAAFQIMLDKGKDLDWFSSPTIVTLGIIALIAFA 254 IYR+RE+P K PID +GL LL+TWVA+ QIMLDKGKDLDWF+SP IV LGI AL++F+ Sbjct: 199 MIYRTRESPTRKPPIDVVGLGLLITWVASLQIMLDKGKDLDWFASPVIVILGITALVSFS 258 Query: 255 YFVVWELNNDHPVVDLRLFGRRNFAGGTIAISIGYGVFFGNLVILPQWLQQYLGYRSIDS 314 +F+VWEL +HP+VDLRLF +RNF GGTIAIS+ YGVFFGNLV+LPQW+Q+YL YRS+D+ Sbjct: 259 FFLVWELTEEHPIVDLRLFQQRNFLGGTIAISVAYGVFFGNLVLLPQWMQEYLNYRSVDA 318 Query: 315 GLSTAPIGIFAVILMPLIGRFLPLVDARKVATASFIGFAIVFWLRSRYNLQVDQMTVILP 374 GL TAP+G+FAV+L P++GR LP DAR +AT +FIGFAIVF++RS+Y +++D ++LP Sbjct: 319 GLVTAPLGVFAVLLAPVMGRVLPRSDARVIATLAFIGFAIVFYMRSKYVIEIDTWHLVLP 378 Query: 375 TLLQGIPTAMFFVPLTVLLLSGLPPERIPAAAGLSSFVRVFCGAVGTSISTTAWNNRTIM 434 TLLQGIP A+FFVPLT ++LSG PP +IPAAAGLS+F RVFCGAVGTSI+ WNNRT++ Sbjct: 379 TLLQGIPMALFFVPLTSIILSGQPPSKIPAAAGLSNFARVFCGAVGTSIAGNEWNNRTVL 438 Query: 435 HHAQLTEHATPYSPWLQETVNNLSSTLGLNAEQTAGMLERTITFQAAMLGINDIFYVSAV 494 HH +LTE A+ +P + +++ S L LN + + + T+ QAAM+G+NDIF++SAV Sbjct: 439 HHERLTEQASINNPAFNQQIDSTQSLLHLNPQSAHALFDFTVNTQAAMMGLNDIFFISAV 498 Query: 495 IFIVIIPLIWIIKP 508 IFI+IIPLIWI +P Sbjct: 499 IFILIIPLIWITRP 512