BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3293.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776108.1| multidrug resistance A (translocase) transme... 597 e-169 ref|YP_003604789.1| efflux pump membrane protein [Burkholderia s... 428 e-118 ref|ZP_00946654.1| Probable multidrug resistance protein A (emrA... 418 e-114 ref|ZP_03268971.1| efflux pump membrane protein [Burkholderia sp... 417 e-114 emb|CAQ35407.1| multidrug resistance protein a (translocase) [Ra... 414 e-113 >ref|YP_003776108.1| multidrug resistance A (translocase) transmembrane secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ64200.1| multidrug resistance A (translocase) transmembrane secretion protein [Herbaspirillum seropedicae SmR1] Length = 406 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 386/394 (97%), Positives = 391/394 (99%) Query: 19 NGNGNGKRKRQLILLTLVLLVIAIACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTV 78 N NGNGKRKRQLILLTLVLLVIA+ACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTV Sbjct: 13 NNNGNGKRKRQLILLTLVLLVIAVACFLYWFLHARFFEETDDAYVGGNVVQISAQVGGTV 72 Query: 79 VAVKADDTQVVKAGQPLVALDAADTKLALEQAQAALAQAVRQTRQLFLNNDTLAANVAAA 138 VAVKADDTQVVKAGQ LVALDAADT+LAL+QAQAALAQAVRQTRQLFLNNDTLAANVAAA Sbjct: 73 VAVKADDTQVVKAGQQLVALDAADTRLALDQAQAALAQAVRQTRQLFLNNDTLAANVAAA 132 Query: 139 DSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDHTS 198 DSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDHTS Sbjct: 133 DSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDHTS 192 Query: 199 VTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQI 258 VTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQI Sbjct: 193 VTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLEQI 252 Query: 259 WIDANFKESQLQHIRLGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNW 318 WIDANFKESQLQHIR+GQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNW Sbjct: 253 WIDANFKESQLQHIRIGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATGNW 312 Query: 319 IKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTNYQTNVYDDLGKQ 378 IKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTNYQTNVYDDLGKQ Sbjct: 313 IKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDGRALEAVPTNYQTNVYDDLGKQ 372 Query: 379 ADAIVERIISDNASGLPQARKSKAAAAPVAVPHT 412 ADAIV+RIISDNASGLPQA KSKAAAAPVAVPHT Sbjct: 373 ADAIVDRIISDNASGLPQAHKSKAAAAPVAVPHT 406 >ref|YP_003604789.1| efflux pump membrane protein [Burkholderia sp. CCGE1002] gb|ADG15278.1| efflux pump membrane protein [Burkholderia sp. CCGE1002] Length = 413 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 241/379 (63%), Positives = 298/379 (78%), Gaps = 2/379 (0%) Query: 15 ANTPNGNGNGKRKRQLILLTLVLLVIAIACFLYWFLHARFFEETDDAYVGGNVVQISAQV 74 A P NGKRKR + LL +V+L+ A+A LY+FL ARF E+TDDAYV GNVVQI+ QV Sbjct: 8 ATPPQAANNGKRKRMMTLLVIVILIAAVAYGLYYFLDARFHEDTDDAYVSGNVVQITPQV 67 Query: 75 GGTVVAVKADDTQVVKAGQPLVALDAADTKLALEQAQAALAQAVRQTRQLFLNNDTLAAN 134 GTV+AV ADDTQVVKAG PLV LD AD ++ALEQA+A LAQ VRQ R LF ++ A Sbjct: 68 TGTVIAVNADDTQVVKAGDPLVVLDPADARVALEQAEANLAQVVRQVRGLFADDSQYEAR 127 Query: 135 VAAADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALT 194 VAA+ ++L+RA++DL+RR +GAVSQE++SHARDAVKSA AALD A+ AANRALT Sbjct: 128 VAASQADLSRAQDDLKRRMTVAQTGAVSQEEISHARDAVKSAQAALDAAKQQLAANRALT 187 Query: 195 DHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVP 254 +T++ HPNV AA +R+AYLN+AR + APV+G+V+KRSVQVGQR++ G PLMAIVP Sbjct: 188 ANTTIANHPNVQAAAAKLRDAYLNHARNTLPAPVTGYVAKRSVQVGQRVSPGTPLMAIVP 247 Query: 255 LEQIWIDANFKESQLQHIRLGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNA 314 L +W+DANFKE QL+H+R+GQPVE+ ADVYGSSV Y G VIGFSAGTG AFSLLPAQNA Sbjct: 248 LHDVWVDANFKEVQLKHMRIGQPVELTADVYGSSVPYHGKVIGFSAGTGSAFSLLPAQNA 307 Query: 315 TGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEAVPTNYQTNVY 372 TGNWIKVVQR+PVRI+LDP+++ HPLRIGLS A V+I D G+ +A T+YQTNV+ Sbjct: 308 TGNWIKVVQRLPVRISLDPQELEKHPLRIGLSMQADVNIKDDTGGQLGQAPSTSYQTNVF 367 Query: 373 DDLGKQADAIVERIISDNA 391 D G +ADA + RII++NA Sbjct: 368 DKYGAEADAEIARIIAENA 386 >ref|ZP_00946654.1| Probable multidrug resistance protein A (emrA) MLYD family [Ralstonia solanacearum UW551] ref|YP_002259750.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum IPO1609] gb|EAP70872.1| Probable multidrug resistance protein A (emrA) MLYD family [Ralstonia solanacearum UW551] emb|CAQ61682.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum IPO1609] Length = 428 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 227/378 (60%), Positives = 294/378 (77%), Gaps = 3/378 (0%) Query: 17 TPNGNGNGKRKRQLILLTLVLLVIAIACFLYWFLHARFFEETDDAYVGGNVVQISAQVGG 76 TPNGNGNGKRKR L L L+V I LYW L+ R+FE TDDAYV GNVVQ++ QV G Sbjct: 22 TPNGNGNGKRKRMLTTLASALVVAGIGYGLYWGLYGRWFESTDDAYVQGNVVQVTPQVAG 81 Query: 77 TVVAVKADDTQVVKAGQPLVALDAADTKLALEQAQAALAQAVRQTRQLFLNNDTLAANVA 136 TVVA++ADDTQ+V +GQPL+ LD AD ++ALEQ++AALAQAVRQ R L+ N A+ +A Sbjct: 82 TVVAIRADDTQLVTSGQPLIELDRADARVALEQSEAALAQAVRQVRTLYSNTGAYASTLA 141 Query: 137 AADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDH 196 +S+LA+AREDL RR+ +GAVSQE+++HA+ ++++A AA++ A+ ANR LTD Sbjct: 142 MRESDLAKAREDLTRRKQIAGTGAVSQEEIAHAQISLQAAEAAVETAKEQLQANRVLTDQ 201 Query: 197 TSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLE 256 T++ HPNVLQAA VR AYL YAR ++ A V+G+V+KRSVQVGQR+A G PLMAIVPL+ Sbjct: 202 TTLERHPNVLQAAAKVREAYLAYARTSLPASVTGYVAKRSVQVGQRVAPGTPLMAIVPLD 261 Query: 257 QIWIDANFKESQLQHIRLGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATG 316 Q+W+DANFKE Q++H+R+GQPVE++ADVYG SV Y G V+GFSAGTG AFSLLPAQNATG Sbjct: 262 QLWVDANFKEVQVRHMRVGQPVELVADVYGGSVTYHGKVVGFSAGTGSAFSLLPAQNATG 321 Query: 317 NWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDG---RALEAVPTNYQTNVYD 373 NWIKVVQR+PVR++LDP++++ HPLR+GLS A VDIH +G A + + QT+VYD Sbjct: 322 NWIKVVQRLPVRVSLDPKELKDHPLRVGLSMEAKVDIHDEGGQSLASTSATSPLQTSVYD 381 Query: 374 DLGKQADAIVERIISDNA 391 G+ AD ++ II+ NA Sbjct: 382 QAGQDADQVIASIIATNA 399 >ref|ZP_03268971.1| efflux pump membrane protein [Burkholderia sp. H160] gb|EDZ99443.1| efflux pump membrane protein [Burkholderia sp. H160] Length = 412 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 243/400 (60%), Positives = 306/400 (76%), Gaps = 4/400 (1%) Query: 15 ANTPNGNGNGKRKRQLILLTLVLLVIAIACFLYWFLHARFFEETDDAYVGGNVVQISAQV 74 A P NGKRKR + LL +V+L+ A+A LY+FL ARF E+TDDAYV GNVVQI+ QV Sbjct: 8 ATPPQAANNGKRKRMMTLLVIVILIAAVAYGLYYFLVARFHEDTDDAYVSGNVVQITPQV 67 Query: 75 GGTVVAVKADDTQVVKAGQPLVALDAADTKLALEQAQAALAQAVRQTRQLFLNNDTLAAN 134 GTV+AV ADDTQVVKAG PLV LD AD ++AL+QA+A LAQ VRQ R LF ++ A Sbjct: 68 TGTVIAVNADDTQVVKAGDPLVVLDPADARVALQQAEANLAQVVRQVRGLFADDSQYEAR 127 Query: 135 VAAADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALT 194 VAA+ ++L+RA++DL+RR +GAVSQE++SHARD+VKSA AALD A+ AANRALT Sbjct: 128 VAASQADLSRAQDDLKRRMTVAQTGAVSQEEISHARDSVKSAQAALDAAKQQLAANRALT 187 Query: 195 DHTSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVP 254 +T++ +HPNV AA +R+AYLN+AR + APV+G+V+KRSVQVGQR++ G PLMAIVP Sbjct: 188 ANTTIADHPNVQAAAAKLRDAYLNHARNTLPAPVTGYVAKRSVQVGQRVSPGTPLMAIVP 247 Query: 255 LEQIWIDANFKESQLQHIRLGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNA 314 L +W+DANFKE QL+ +R+GQPVE+ ADVYGSSV + G V+GFSAGTG AFSLLPAQNA Sbjct: 248 LHDVWVDANFKEVQLKRMRIGQPVELTADVYGSSVPFHGKVVGFSAGTGSAFSLLPAQNA 307 Query: 315 TGNWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGD--GRALEAVPTNYQTNVY 372 TGNWIKVVQR+PVRI+LDP+++ HPLRIGLS A V+I D G+ +A T YQTNV+ Sbjct: 308 TGNWIKVVQRLPVRISLDPQELEKHPLRIGLSMQADVNIKDDTGGQLGQAPSTAYQTNVF 367 Query: 373 DDLGKQADAIVERIISDNASGLPQ--ARKSKAAAAPVAVP 410 D G +ADA + RII++NA A+KS AA+ A P Sbjct: 368 DKYGAEADAEIARIIAENAGSNVNGGAQKSTAASGVAAKP 407 >emb|CAQ35407.1| multidrug resistance protein a (translocase) [Ralstonia solanacearum MolK2] Length = 428 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 226/377 (59%), Positives = 294/377 (77%), Gaps = 3/377 (0%) Query: 17 TPNGNGNGKRKRQLILLTLVLLVIAIACFLYWFLHARFFEETDDAYVGGNVVQISAQVGG 76 TPNGNGNGKRKR L L L+V I LYW L+ R+FE TDDAYV GNVVQ++ QV G Sbjct: 22 TPNGNGNGKRKRMLTTLASALVVAGIGYGLYWGLYGRWFESTDDAYVQGNVVQVTPQVAG 81 Query: 77 TVVAVKADDTQVVKAGQPLVALDAADTKLALEQAQAALAQAVRQTRQLFLNNDTLAANVA 136 TVVA++ADDTQ+V +GQPL+ LD AD ++ALEQ++AALAQAVRQ R L+ N A+ +A Sbjct: 82 TVVAIRADDTQLVTSGQPLIELDRADARVALEQSEAALAQAVRQVRTLYSNTGAYASTLA 141 Query: 137 AADSNLARAREDLQRRQAGLSSGAVSQEDVSHARDAVKSAVAALDQARAAAAANRALTDH 196 +S+LA+AREDL RR+ +GAVSQE+++HA+ ++++A AA++ A+ ANR LTD Sbjct: 142 MRESDLAKAREDLTRRKQIAGTGAVSQEEIAHAQISLQAAEAAVETAKEQLQANRVLTDQ 201 Query: 197 TSVTEHPNVLQAATAVRNAYLNYARVNIVAPVSGFVSKRSVQVGQRIAAGNPLMAIVPLE 256 T++ HPNVLQAA VR AYL YAR ++ A V+G+V+KRSVQVGQR+A G PLMAIVPL+ Sbjct: 202 TTLERHPNVLQAAAKVREAYLAYARTSLPASVTGYVAKRSVQVGQRVAPGTPLMAIVPLD 261 Query: 257 QIWIDANFKESQLQHIRLGQPVEVIADVYGSSVKYKGTVIGFSAGTGGAFSLLPAQNATG 316 Q+W+DANFKE Q++H+R+GQPVE++ADVYG SV Y G V+GFSAGTG AFSLLPAQNATG Sbjct: 262 QLWVDANFKEVQVRHMRVGQPVELVADVYGGSVTYHGKVVGFSAGTGSAFSLLPAQNATG 321 Query: 317 NWIKVVQRVPVRIALDPEQVRAHPLRIGLSTTATVDIHGDG---RALEAVPTNYQTNVYD 373 NWIKVVQR+PVR++LDP++++ HPLR+GLS A VDIH +G A + + QT+VYD Sbjct: 322 NWIKVVQRLPVRVSLDPKELKDHPLRVGLSMEAKVDIHDEGGQSLASTSATSPLQTSVYD 381 Query: 374 DLGKQADAIVERIISDN 390 G++AD ++ II+ N Sbjct: 382 QAGQEADQVIASIIATN 398