BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3292.p (509 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776107.1| NodT family protein [Herbaspirillum seropedi... 673 0.0 ref|ZP_02906300.1| RND efflux system, outer membrane lipoprotein... 396 e-108 ref|ZP_04938902.1| RND efflux system, outer membrane lipoprotein... 395 e-108 ref|YP_835150.1| RND efflux system outer membrane lipoprotein [B... 395 e-107 ref|YP_002230642.1| outer membrane efflux protein [Burkholderia ... 394 e-107 >ref|YP_003776107.1| NodT family protein [Herbaspirillum seropedicae SmR1] gb|ADJ64199.1| RND efflux system, outer membrane lipoprotein, NodT family protein [Herbaspirillum seropedicae SmR1] Length = 495 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 391/464 (84%), Positives = 435/464 (93%) Query: 30 AGCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDA 89 +GCASF GIGSD+Q+AQA DF+T RSLSDPNPGAPNGQWPGSDWVRQFGDAQL AL+E A Sbjct: 27 SGCASFAGIGSDRQVAQAGDFATQRSLSDPNPGAPNGQWPGSDWVRQFGDAQLVALVEQA 86 Query: 90 LAANPGLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNQFSSTSIYPPPYGGNWYNE 149 L ++P LQQARARI AA+AL E+RGAPLLPSV+A+ASV RNQFSST+IYPPPYGGNWYNE Sbjct: 87 LTSSPSLQQARARIAAASALAESRGAPLLPSVNAEASVTRNQFSSTTIYPPPYGGNWYNE 146 Query: 150 KKAGLNVGYELDLWNKNQSALEQAISSEKAAQASEQEARLALTASIVSVYSQLAAQYAVQ 209 KKAGLNVGYELDLWNKNQ+AL QAISSEKAAQASEQEARLALTASIV+VYSQLAAQYA+ Sbjct: 147 KKAGLNVGYELDLWNKNQAALAQAISSEKAAQASEQEARLALTASIVTVYSQLAAQYALH 206 Query: 210 DILQRTVQQRSNLETITADRVKTGLDSQIERNQSRTSSADARAQLEQNAGQIVLLRQQLG 269 DILQ TV QR++LE ITA+R++TGLDSQIER+QSRTSSADARAQL Q+ GQIVLLRQQLG Sbjct: 207 DILQSTVDQRTSLEKITAERLRTGLDSQIERDQSRTSSADARAQLAQSEGQIVLLRQQLG 266 Query: 270 ALSGKGPDRGLQLAPPAMQNLATPGLPADLPLNLLGRRPDIVAARWQVEAASRGVDVAKA 329 AL+GKGPD GLQLAPPA+Q LATPGLPA+LPLNL+GRRPDIVAARWQVEAASRGVDVAKA Sbjct: 267 ALAGKGPDYGLQLAPPALQGLATPGLPAELPLNLMGRRPDIVAARWQVEAASRGVDVAKA 326 Query: 330 RFYPDINLSAMIGFDSLVDANPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELA 389 RFYPDINLSAMIGFD+L+D+NPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYA+YELA Sbjct: 327 RFYPDINLSAMIGFDTLLDSNPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYASYELA 386 Query: 390 VATYNKTLNDAYADVARQIAAIHSIERQLPIRREALQAAERAYDLARERYRLGLVSQLVV 449 VATYNKTLNDAYADVARQIAAIH+ ERQLPIR EALQAAERAY LARERYRLGLVSQL + Sbjct: 387 VATYNKTLNDAYADVARQIAAIHATERQLPIRSEALQAAERAYALARERYRLGLVSQLTL 446 Query: 450 LNAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQAGLA 493 L+A+T +L Q+QA++ L+A +R+QQ+ L+KALGGGFDAQ+ GLA Sbjct: 447 LSAQTGVLAQRQAMVALQAQRRDQQVALYKALGGGFDAQRDGLA 490 >ref|ZP_02906300.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia ambifaria MEX-5] gb|EDT42558.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia ambifaria MEX-5] Length = 498 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 232/475 (48%), Positives = 306/475 (64%), Gaps = 5/475 (1%) Query: 31 GCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDAL 90 GCA++ GI SDKQ+A A F T +SL PG GQWP DW QFGD QL LI++AL Sbjct: 28 GCANYIGIKSDKQIAPASQFDTTQSL----PGQ-GGQWPALDWANQFGDPQLPKLIDEAL 82 Query: 91 AANPGLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNQFSSTSIYPPPYGGNWYNEK 150 NP + QA+ARI A++ +E+ + L+P +A S R +SS +++PPPYGG WY+E Sbjct: 83 QGNPSIAQAQARIAKASSYIESSRSNLMPKAEASYSWTRELYSSNALFPPPYGGQWYSEN 142 Query: 151 KAGLNVGYELDLWNKNQSALEQAISSEKAAQASEQEARLALTASIVSVYSQLAAQYAVQD 210 A + ++LDLW KN+ L A+S EKAA+A Q+AR+ L AS+ Y+ LA YA++D Sbjct: 143 NALASASWDLDLWGKNRERLHTAVSQEKAAEADMQQARITLAASVARTYNSLAQLYALRD 202 Query: 211 ILQRTVQQRSNLETITADRVKTGLDSQIERNQSRTSSADARAQLEQNAGQIVLLRQQLGA 270 I QR + R + IT RV GLD+ +ER +R + A +A L GQI +R QL A Sbjct: 203 IAQREITNRQTVGKITDGRVSAGLDTNVERQTARGNIATTQASLSDLDGQITTVRYQLAA 262 Query: 271 LSGKGPDRGLQLAPPAMQNLATPGLPADLPLNLLGRRPDIVAARWQVEAASRGVDVAKAR 330 L GKGPDRGLQ+A P M LP +LP +L+ RRPDIVAARWQVEAA V AKA Sbjct: 263 LLGKGPDRGLQIAAPVMSPAGDVALPGNLPADLVSRRPDIVAARWQVEAAMHDVKEAKAE 322 Query: 331 FYPDINLSAMIGFDSLVDANPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELAV 390 F+PD+NL+A GFD+ AS+ FGPAI LPIF+ GALRA LKG YA+++L+V Sbjct: 323 FFPDVNLAAGFGFDAFGWGKFLNFASRQAQFGPAIHLPIFDAGALRARLKGRYADFDLSV 382 Query: 391 ATYNKTLNDAYADVARQIAAIHSIERQLPIRREALQAAERAYDLARERYRLGLVSQLVVL 450 A YN+TL +A DVA Q+A+I +++RQ+ + AL A+ RAYDLA RY+ GL QL VL Sbjct: 383 ANYNQTLINALNDVATQVASIRAVDRQMDDAQRALDASTRAYDLAVIRYKAGLSPQLQVL 442 Query: 451 NAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQAGLAIVTTAAPSSPAA 505 NA++ L +Q + NL+ +R+ Q+ L KALGGGFDA LA P+ AA Sbjct: 443 NADSNRLASEQTVTNLKMRRRDMQLALIKALGGGFDATGTRLAAPDADKPTKQAA 497 >ref|ZP_04938902.1| RND efflux system, outer membrane lipoprotein, NodT [Burkholderia cenocepacia PC184] gb|EAY62073.1| RND efflux system, outer membrane lipoprotein, NodT [Burkholderia cenocepacia PC184] Length = 510 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 231/475 (48%), Positives = 304/475 (64%), Gaps = 5/475 (1%) Query: 31 GCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDAL 90 GCA++ GI SDKQ+A A F +A+SL A GQWP DW QFGD QL LI++AL Sbjct: 40 GCANYIGIKSDKQIAPASQFESAQSLP-----AQGGQWPALDWANQFGDPQLPKLIDEAL 94 Query: 91 AANPGLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNQFSSTSIYPPPYGGNWYNEK 150 NP + QA+ARI A++ +E+ + L+P +A S R +SS +++PPPYGG WY+E Sbjct: 95 QGNPSIAQAQARIAKASSYIESSRSNLMPKAEASYSWTRELYSSNALFPPPYGGQWYSEN 154 Query: 151 KAGLNVGYELDLWNKNQSALEQAISSEKAAQASEQEARLALTASIVSVYSQLAAQYAVQD 210 + +ELDLW KN+ L A+S EKAA+A Q+AR+ L +S+ Y+ LA YA++D Sbjct: 155 NVLASASWELDLWGKNRERLHTAVSQEKAAEADMQQARITLASSVARTYNSLAQLYALRD 214 Query: 211 ILQRTVQQRSNLETITADRVKTGLDSQIERNQSRTSSADARAQLEQNAGQIVLLRQQLGA 270 I QR + R + IT RV GLD+ +ER +R + A +A L GQI +R QL A Sbjct: 215 IAQREITNRETVGKITDGRVSAGLDTNVERQTARGNIATTQASLSDLDGQITTVRYQLAA 274 Query: 271 LSGKGPDRGLQLAPPAMQNLATPGLPADLPLNLLGRRPDIVAARWQVEAASRGVDVAKAR 330 L GKGPDRGLQ+A P + LP +LP +L+ RRPDIVAARWQVEAA V AKA Sbjct: 275 LLGKGPDRGLQIAAPVLNPSGDVTLPGNLPADLVSRRPDIVAARWQVEAAMHDVKEAKAE 334 Query: 331 FYPDINLSAMIGFDSLVDANPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELAV 390 FYPD+NL+A GFD+ AS+ FGPAI LPIF+ GALRA LKG YA+++L+V Sbjct: 335 FYPDVNLAAGFGFDAFGWGKFLNFASRQAQFGPAIHLPIFDAGALRAQLKGRYADFDLSV 394 Query: 391 ATYNKTLNDAYADVARQIAAIHSIERQLPIRREALQAAERAYDLARERYRLGLVSQLVVL 450 A YN+TL A DVA Q+A+I +I+RQ+ + AL A+ RAYDLA RY+ GL QL VL Sbjct: 395 ANYNQTLISALNDVATQVASIRAIDRQMGDAQRALDASTRAYDLAVIRYKAGLSPQLQVL 454 Query: 451 NAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQAGLAIVTTAAPSSPAA 505 A++ L +Q + NL+ +R+ Q+ L KALGGGFDA LA A P+ AA Sbjct: 455 TADSNRLASEQTVTNLKMRRRDMQLALIKALGGGFDATGTPLAAPDAATPTKQAA 509 >ref|YP_835150.1| RND efflux system outer membrane lipoprotein [Burkholderia cenocepacia HI2424] ref|YP_001764778.1| RND efflux system outer membrane lipoprotein [Burkholderia cenocepacia MC0-3] gb|ABK08257.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia cenocepacia HI2424] gb|ACA90656.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia cenocepacia MC0-3] Length = 498 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 231/475 (48%), Positives = 304/475 (64%), Gaps = 5/475 (1%) Query: 31 GCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDAL 90 GCA++ GI SDKQ+A A F +A+SL A GQWP DW QFGD QL LI++AL Sbjct: 28 GCANYIGIKSDKQIAPASQFESAQSLP-----AQGGQWPALDWANQFGDPQLPKLIDEAL 82 Query: 91 AANPGLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNQFSSTSIYPPPYGGNWYNEK 150 NP + QA+ARI A++ +E+ + L+P +A S R +SS +++PPPYGG WY+E Sbjct: 83 QGNPSIAQAQARIAKASSYIESSRSNLMPKAEASYSWTRELYSSNALFPPPYGGQWYSEN 142 Query: 151 KAGLNVGYELDLWNKNQSALEQAISSEKAAQASEQEARLALTASIVSVYSQLAAQYAVQD 210 + +ELDLW KN+ L A+S EKAA+A Q+AR+ L +S+ Y+ LA YA++D Sbjct: 143 NVLASASWELDLWGKNRERLHTAVSQEKAAEADMQQARITLASSVARTYNSLAQLYALRD 202 Query: 211 ILQRTVQQRSNLETITADRVKTGLDSQIERNQSRTSSADARAQLEQNAGQIVLLRQQLGA 270 I QR + R + IT RV GLD+ +ER +R + A +A L GQI +R QL A Sbjct: 203 IAQREITNRETVGKITDGRVSAGLDTNVERQTARGNIATTQASLSDLDGQITTVRYQLAA 262 Query: 271 LSGKGPDRGLQLAPPAMQNLATPGLPADLPLNLLGRRPDIVAARWQVEAASRGVDVAKAR 330 L GKGPDRGLQ+A P + LP +LP +L+ RRPDIVAARWQVEAA V AKA Sbjct: 263 LLGKGPDRGLQIAAPVLNPSGDVTLPGNLPADLVSRRPDIVAARWQVEAAMHDVKEAKAE 322 Query: 331 FYPDINLSAMIGFDSLVDANPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELAV 390 FYPD+NL+A GFD+ AS+ FGPAI LPIF+ GALRA LKG YA+++L+V Sbjct: 323 FYPDVNLAAGFGFDAFGWGKFLNFASRQAQFGPAIHLPIFDAGALRAQLKGRYADFDLSV 382 Query: 391 ATYNKTLNDAYADVARQIAAIHSIERQLPIRREALQAAERAYDLARERYRLGLVSQLVVL 450 A YN+TL A DVA Q+A+I +I+RQ+ + AL A+ RAYDLA RY+ GL QL VL Sbjct: 383 ANYNQTLISALNDVATQVASIRAIDRQMGDAQRALDASTRAYDLAVIRYKAGLSPQLQVL 442 Query: 451 NAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQAGLAIVTTAAPSSPAA 505 A++ L +Q + NL+ +R+ Q+ L KALGGGFDA LA A P+ AA Sbjct: 443 TADSNRLASEQTVTNLKMRRRDMQLALIKALGGGFDATGTPLAAPDAATPTKQAA 497 >ref|YP_002230642.1| outer membrane efflux protein [Burkholderia cenocepacia J2315] emb|CAR51811.1| outer membrane efflux protein [Burkholderia cenocepacia J2315] Length = 498 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 231/475 (48%), Positives = 303/475 (63%), Gaps = 5/475 (1%) Query: 31 GCASFEGIGSDKQLAQARDFSTARSLSDPNPGAPNGQWPGSDWVRQFGDAQLTALIEDAL 90 GCA++ GI SDKQ+A A F + +SL A GQWP DW QFGD QL LI++AL Sbjct: 28 GCANYIGIKSDKQIAPASQFESTQSLP-----AQGGQWPALDWASQFGDPQLPKLIDEAL 82 Query: 91 AANPGLQQARARIGAAAALVEARGAPLLPSVDAQASVIRNQFSSTSIYPPPYGGNWYNEK 150 NP + QA+ARI A++ +E+ + L+P +A S R +S+ ++PPPYGG WY+E Sbjct: 83 QGNPSIAQAQARIAKASSYIESSRSNLMPKAEASYSWTRELYSANGLFPPPYGGQWYSEN 142 Query: 151 KAGLNVGYELDLWNKNQSALEQAISSEKAAQASEQEARLALTASIVSVYSQLAAQYAVQD 210 A + +ELDLW KN+ L A+S EKAA+A Q+AR+ L +S+ Y+ LA YA++D Sbjct: 143 NALASASWELDLWGKNRERLHTAVSQEKAAEADMQQARITLASSVARTYNSLAQLYALRD 202 Query: 211 ILQRTVQQRSNLETITADRVKTGLDSQIERNQSRTSSADARAQLEQNAGQIVLLRQQLGA 270 I QR + R + IT RV GLD+ +ER +R + A +A L GQI +R QL A Sbjct: 203 IAQREITNRETVGKITDGRVSAGLDTNVERQTARGNIATTQASLSDLDGQITTVRYQLAA 262 Query: 271 LSGKGPDRGLQLAPPAMQNLATPGLPADLPLNLLGRRPDIVAARWQVEAASRGVDVAKAR 330 L GKGPDRGLQ+A P M LP +LP +L+ RRPDIVAARWQVEAA V AKA Sbjct: 263 LLGKGPDRGLQIAAPVMNPSGNVTLPGNLPADLVSRRPDIVAARWQVEAAMHDVKEAKAE 322 Query: 331 FYPDINLSAMIGFDSLVDANPFTAASKSIAFGPAITLPIFEGGALRAGLKGEYANYELAV 390 FYPD+NL+A GFD+ AS+ FGPAI LPIF+ GALRA LKG YA+++L+V Sbjct: 323 FYPDVNLAAGFGFDAFGWGKFLNFASRQAQFGPAIHLPIFDAGALRAQLKGRYADFDLSV 382 Query: 391 ATYNKTLNDAYADVARQIAAIHSIERQLPIRREALQAAERAYDLARERYRLGLVSQLVVL 450 A YN+TL A DVA Q+A+I +I+RQ+ + AL A+ RAYDLA RY+ GL QL VL Sbjct: 383 ANYNQTLISALNDVATQVASIRAIDRQMGDAQRALDASTRAYDLAVIRYKAGLSPQLQVL 442 Query: 451 NAETALLGQQQALINLEASKRNQQIGLFKALGGGFDAQQAGLAIVTTAAPSSPAA 505 A++ L +Q + NL+ +R+ Q+ L KALGGGFDA LA A P+ AA Sbjct: 443 TADSNRLAAEQTVTNLKMRRRDMQLALIKALGGGFDATGTPLAAPDAATPTKQAA 497