BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3291.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776106.1| transcription regulator protein [Herbaspiril... 340 5e-92 ref|YP_004235103.1| regulatory protein TetR [Acidovorax avenae s... 179 2e-43 ref|ZP_06685188.1| transcriptional regulatory protein [Achromoba... 174 5e-42 ref|YP_004489924.1| regulatory protein TetR [Delftia sp. Cs1-4] ... 169 2e-40 gb|EFV82341.1| transcriptional regulator [Achromobacter xylosoxi... 167 6e-40 >ref|YP_003776106.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64198.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 177/204 (86%), Positives = 191/204 (93%) Query: 1 MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK 60 MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK Sbjct: 1 MKLQPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNK 60 Query: 61 DALIFALRERHSTRMLTLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEE 120 DALIFALRERH+TRML LFED VAHID +GTLS DF+++I+A+VAAHLLEPELNRILEEE Sbjct: 61 DALIFALRERHATRMLALFEDAVAHIDDAGTLSSDFDQVISAVVAAHLLEPELNRILEEE 120 Query: 121 FPAFNLPVSQEIRQGFFDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYG 180 FPA+NLPVS EIRQGFF++I RVLEKHR +IT PDLD+A FV+QRMLKALIKAVVLTG G Sbjct: 121 FPAYNLPVSTEIRQGFFEAIHRVLEKHRDSITTPDLDLAAFVLQRMLKALIKAVVLTGPG 180 Query: 181 GVSPASVRTEILPAVIGYLTAPRS 204 GV P SVR+EILPAVIGYLT PRS Sbjct: 181 GVPPGSVRSEILPAVIGYLTLPRS 204 >ref|YP_004235103.1| regulatory protein TetR [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46536.1| regulatory protein TetR [Acidovorax avenae subsp. avenae ATCC 19860] Length = 220 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 98/203 (48%), Positives = 135/203 (66%), Gaps = 2/203 (0%) Query: 4 QPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDAL 63 QPRK PRQARS+AMV+ IL+A +RVL ERGYA TNTNLVAE AG+S+GS+YQYFPNKD+L Sbjct: 18 QPRKAPRQARSQAMVEAILEATARVLAERGYAGTNTNLVAERAGVSIGSVYQYFPNKDSL 77 Query: 64 IFALRERHSTRMLTLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEEFPA 123 + AL ERH +M DV+A G L G + ++ AL+AAH + P+L+R+LE+EFP Sbjct: 78 VTALHERHGAQMYAAIADVLAAERPDG-LRGHVQAMVRALLAAHRVAPDLHRVLEKEFPF 136 Query: 124 FNLPVSQEIRQ-GFFDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYGGV 182 F+ P + G F +R +LE HR I P DLD+ T++V + +++L+ A + Sbjct: 137 FDAPREESAADGGIFRQVRALLESHRGEIAPADLDLTTWMVLQTMESLVHAAAIDPPAMF 196 Query: 183 SPASVRTEILPAVIGYLTAPRSQ 205 P +V I+ ++GYLTA Q Sbjct: 197 PPEAVEAAIVQVLMGYLTAAPVQ 219 >ref|ZP_06685188.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] gb|EFF77978.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 259 Score = 174 bits (442), Expect = 5e-42, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 133/200 (66%), Gaps = 2/200 (1%) Query: 4 QPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDAL 63 QPRK PRQ RS+ VDTIL A +RVL GYA TNTNL+AE+AG+SVGSLYQYFPNK+AL Sbjct: 6 QPRKSPRQQRSQQTVDTILQATARVLAAHGYAGTNTNLIAETAGVSVGSLYQYFPNKNAL 65 Query: 64 IFALRERHSTRMLTLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEEFPA 123 I AL +RH +ML + +DV+ + + + TL ++ A++ AHLLEP L+R+LE EFP Sbjct: 66 IAALHQRHDNQMLDVIDDVL-NSNPAATLKERVAAIVQAMLHAHLLEPALHRVLEREFPL 124 Query: 124 FNLPVSQEIR-QGFFDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYGGV 182 F++P + Q +R +LE HRA I D D+AT+VV R++++L+ A+ L G Sbjct: 125 FDIPGDHSLADQDIHRRMRHLLELHRAEIAQQDRDLATYVVLRIMESLVHAMALEPPAGF 184 Query: 183 SPASVRTEILPAVIGYLTAP 202 + ++ AV+GYL P Sbjct: 185 DTRQLEQSVVDAVMGYLATP 204 >ref|YP_004489924.1| regulatory protein TetR [Delftia sp. Cs1-4] gb|AEF91569.1| regulatory protein TetR [Delftia sp. Cs1-4] Length = 219 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 98/200 (49%), Positives = 138/200 (69%), Gaps = 2/200 (1%) Query: 4 QPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDAL 63 QPRK+PRQARS A V+ IL+A +RVL ERGYA TNTNLVAE AG+SVGSLYQYFPNKD+L Sbjct: 18 QPRKQPRQARSLATVEAILEAAARVLAERGYAATNTNLVAERAGVSVGSLYQYFPNKDSL 77 Query: 64 IFALRERHSTRMLTLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEEFPA 123 I AL ERH+ +M V+A G L G + ++ AL+AAH +EP+L+R+LE+EFP Sbjct: 78 ITALHERHAAQMYAAIAAVLAAERPQG-LQGHVQAMVRALLAAHRVEPDLHRVLEKEFPF 136 Query: 124 FNLPVSQEIRQ-GFFDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYGGV 182 F+ P Q G F +R++LE HR+ + DLD+AT+++ + +++L+ A V+ Sbjct: 137 FDAPREQSAADGGIFRQVRQLLELHRSQLAHRDLDLATWMLLQTMESLVHAAVIDPPAMF 196 Query: 183 SPASVRTEILPAVIGYLTAP 202 +P ++ I+ ++GYL AP Sbjct: 197 TPQALEDGIVQVLMGYLRAP 216 >gb|EFV82341.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 210 Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats. Identities = 96/200 (48%), Positives = 129/200 (64%), Gaps = 2/200 (1%) Query: 4 QPRKEPRQARSRAMVDTILDAMSRVLVERGYAKTNTNLVAESAGISVGSLYQYFPNKDAL 63 QPRK PRQ RS+ VDTIL A +RVL E GYA TNTN +AE+AG+SVGSLYQYFPNK+AL Sbjct: 6 QPRKSPRQQRSQQTVDTILQATARVLAEYGYAGTNTNRIAETAGVSVGSLYQYFPNKNAL 65 Query: 64 IFALRERHSTRMLTLFEDVVAHIDASGTLSGDFEKLINALVAAHLLEPELNRILEEEFPA 123 I AL +RH +ML L ++V+ + + TL ++ A + AHLLEP L+R+LE EFP Sbjct: 66 IAALHDRHDKQMLALIDEVLDG-NPAATLRERVAAIVAASLRAHLLEPALHRVLEREFPL 124 Query: 124 FNLPVSQ-EIRQGFFDSIRRVLEKHRATITPPDLDVATFVVQRMLKALIKAVVLTGYGGV 182 F+ P Q +R +LE HR I D ++AT+VV R++++L+ AV L G Sbjct: 125 FDQPRDHSRADQDIHRRMRHLLELHREEIAQQDRELATYVVLRIMESLVHAVALEPPAGF 184 Query: 183 SPASVRTEILPAVIGYLTAP 202 P + ++ AV+GYL P Sbjct: 185 DPRQLEGAVVDAVMGYLGTP 204