BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3286.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776101.1| hypothetical protein Hsero_2697 [Herbaspiril...   190   5e-47
ref|YP_001355195.1| hypothetical protein mma_3505 [Janthinobacte...   151   3e-35
ref|YP_001101505.1| hypothetical protein HEAR3277 [Herminiimonas...   148   3e-34
gb|EFV87229.1| secreted repeat protein [Achromobacter xylosoxida...   137   4e-31
ref|ZP_02893171.1| Secreted repeat of unknown function [Burkhold...   133   1e-29

>ref|YP_003776101.1| hypothetical protein Hsero_2697 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64193.1| exported protein [Herbaspirillum seropedicae SmR1]
          Length = 123

 Score =  190 bits (483), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 98/109 (89%), Positives = 99/109 (90%)

Query: 30  SVSFTASAQSAGVKTMDGILVDASGMTVYTFDKDTANSGKSVCNGPCAKLWPPVAPMGMP 89
           S S TA AQ AGVK MDGILVDA GMTVYTFDKDT N+GKSVCNGPCAKLWPPVAPMG P
Sbjct: 15  SASVTALAQGAGVKAMDGILVDAHGMTVYTFDKDTPNNGKSVCNGPCAKLWPPVAPMGSP 74

Query: 90  AAPYSTVTRDDGSAQLAYQGKPLYLYEADKKPGDRTGDNFKDVWHVVKP 138
           AAPYSTVTRDDGSAQLAYQGKPLYLYE DKKPGDR GDNFKDVWHVVKP
Sbjct: 75  AAPYSTVTRDDGSAQLAYQGKPLYLYEQDKKPGDRAGDNFKDVWHVVKP 123


>ref|YP_001355195.1| hypothetical protein mma_3505 [Janthinobacterium sp. Marseille]
 gb|ABR90289.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 124

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/123 (66%), Positives = 94/123 (76%), Gaps = 1/123 (0%)

Query: 16  MRLLATSLLALACASVSFTASAQSAGVKTMDGILVDASGMTVYTFDKDTANSGKSVCNGP 75
           M+L    L A+A   +S +A AQS  VK  DGILV  SGMTVYTFDKD A+SGKS CNGP
Sbjct: 1   MKLSQIVLSAVAAVVLSGSAYAQSVPVKKADGILVTTSGMTVYTFDKDVADSGKSACNGP 60

Query: 76  CAKLWPPVAPMGMPA-APYSTVTRDDGSAQLAYQGKPLYLYEADKKPGDRTGDNFKDVWH 134
           CA  WPPV+   + A APYS VTRDDG+ QLAY+GKPLYL+ +DKK GDRTGDNFKD+WH
Sbjct: 61  CATAWPPVSAKDVKASAPYSVVTRDDGTPQLAYKGKPLYLFASDKKAGDRTGDNFKDIWH 120

Query: 135 VVK 137
           VVK
Sbjct: 121 VVK 123


>ref|YP_001101505.1| hypothetical protein HEAR3277 [Herminiimonas arsenicoxydans]
 emb|CAL63384.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 124

 Score =  148 bits (374), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/121 (64%), Positives = 93/121 (76%), Gaps = 4/121 (3%)

Query: 18  LLATSLLALACASVSFTASAQSAGVKTMDGILVDASGMTVYTFDKDTANSGKSVCNGPCA 77
           +L +++ AL  +S SF   AQ+  VK +DGILV ++GMTVYTFDKD A+SGKS CNGPC 
Sbjct: 6   ILFSAIAALLLSSASF---AQTVPVKKVDGILVTSTGMTVYTFDKDVADSGKSTCNGPCT 62

Query: 78  KLWPPVAPMGM-PAAPYSTVTRDDGSAQLAYQGKPLYLYEADKKPGDRTGDNFKDVWHVV 136
             WPPV+   + P  PYS VTRDDGSAQLAY+GKPLYL+ ADKK GDR GDN KD+WHVV
Sbjct: 63  ANWPPVSAKDVKPTPPYSIVTRDDGSAQLAYKGKPLYLFAADKKAGDRNGDNVKDIWHVV 122

Query: 137 K 137
           K
Sbjct: 123 K 123


>gb|EFV87229.1| secreted repeat protein [Achromobacter xylosoxidans C54]
          Length = 122

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/125 (59%), Positives = 91/125 (72%), Gaps = 5/125 (4%)

Query: 16  MRLLATSLLALACASVSFTASAQSAGVKTMDGILVDASGMTVYTFDKDTANSGKSVCNGP 75
           MR    + LAL+CA++ F+A A +  VKT DGILV+++GMT+YTFDKD    GKS CN  
Sbjct: 1   MRTQLAATLALSCAAL-FSAGAHAQAVKTQDGILVNSAGMTLYTFDKDAG--GKSACNDQ 57

Query: 76  CAKLWPPV--APMGMPAAPYSTVTRDDGSAQLAYQGKPLYLYEADKKPGDRTGDNFKDVW 133
           CAK+WPPV  A     +   S +TRDDGS Q AY+GKP+YLY  D KPGD+TGDNFKDVW
Sbjct: 58  CAKIWPPVTAAADAKASGDLSIITRDDGSKQWAYKGKPVYLYAKDAKPGDKTGDNFKDVW 117

Query: 134 HVVKP 138
           HV+KP
Sbjct: 118 HVIKP 122


>ref|ZP_02893171.1| Secreted repeat of unknown function [Burkholderia ambifaria
           IOP40-10]
 gb|EDT01250.1| Secreted repeat of unknown function [Burkholderia ambifaria
           IOP40-10]
          Length = 316

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/142 (52%), Positives = 91/142 (64%), Gaps = 7/142 (4%)

Query: 2   GMAHRATRP---RKGNIMRLLATSLLALACASVSFTASAQSAGVKTMDGILVDASGMTVY 58
           G A  + RP   ++  +  +L  S + LA ASVS  ASAQ +  K  +G LV A+GMTVY
Sbjct: 177 GRARDSRRPPDYKEVPMKAVLLVSSVVLAMASVS--ASAQGSITKVENGTLVAANGMTVY 234

Query: 59  TFDKDTANSGKSVCNGPCAKLWPP--VAPMGMPAAPYSTVTRDDGSAQLAYQGKPLYLYE 116
            FDKD  N+G S C+GPC  LWPP   +   +P  PY+ V RDDGS Q AY+GKPLY + 
Sbjct: 235 AFDKDKPNAGTSACSGPCETLWPPYKASATDVPVGPYTIVKRDDGSPQWAYKGKPLYFFS 294

Query: 117 ADKKPGDRTGDNFKDVWHVVKP 138
            D K GDR GDNFK+VWHVV P
Sbjct: 295 KDMKQGDRNGDNFKNVWHVVAP 316