BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3285.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776100.1| RNA polymerase sigma-E factor [Herbaspirillu... 186 2e-45 ref|YP_001355194.1| ECF subfamily RNA polymerase sigma factor [J... 178 3e-43 ref|YP_001101504.1| putative RNA polymerase sigma factor [Hermin... 171 5e-41 ref|YP_283748.1| sigma-70 region 2:sigma-70 region 4 [Dechloromo... 146 1e-33 ref|YP_934068.1| putative RNA polymerase sigma factor [Azoarcus ... 142 2e-32 >ref|YP_003776100.1| RNA polymerase sigma-E factor [Herbaspirillum seropedicae SmR1] gb|ADJ64192.1| RNA polymerase sigma-E factor (sigma-24) protein [Herbaspirillum seropedicae SmR1] Length = 163 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 121/164 (73%), Positives = 136/164 (82%), Gaps = 1/164 (0%) Query: 22 MLACLPRLRRYARALTGGRDSADDLVQDTLERAWQKLDSWQRGSDMRPWLFAIMHNLHAD 81 MLACLPRLRRYARALTG R++ADDLVQDTLERAWQKLDSWQRGS MRPWLF+IMHNLHAD Sbjct: 1 MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 60 Query: 82 QRRQPTLVTVDLEQAADAAAPASLAEHGLALDLEAALQLLPAEQREVLLLVVLEEMRYEE 141 RR+ + TV L++ + + G+ LDLE ALQLLP EQREVLLLVVLEEMRYEE Sbjct: 61 ARRRASPATVALDEYGEIDQAQVALDPGVLLDLETALQLLPPEQREVLLLVVLEEMRYEE 120 Query: 142 VAATLGIPTGTVMSRLSRARERLRQWMEGPGGQGEAGATLKVVK 185 VA TLGIPTGTVMSRLSRARERLR+ M+G G+ G++LKVVK Sbjct: 121 VAVTLGIPTGTVMSRLSRARERLRRVMQGQ-GESSPGSSLKVVK 163 >ref|YP_001355194.1| ECF subfamily RNA polymerase sigma factor [Janthinobacterium sp. Marseille] gb|ABR88751.1| RNA polymerase sigma-70 factor, ECF subfamily [Janthinobacterium sp. Marseille] Length = 168 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 101/156 (64%), Positives = 118/156 (75%), Gaps = 1/156 (0%) Query: 16 QADEQAMLACLPRLRRYARALTGGRDSADDLVQDTLERAWQKLDSWQRGSDMRPWLFAIM 75 Q + ++AC+PRLRRYARAL G R ADDLVQDT+ER W+KL SWQRGSDMR WLF IM Sbjct: 2 QDERDRLIACIPRLRRYARALLGDRTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGIM 61 Query: 76 HNLHADQRRQPTLVTVDLEQAADAAAPASLAEHGLAL-DLEAALQLLPAEQREVLLLVVL 134 HNLH DQ R+P+L T +L+ A + GL + DLE+AL LP EQRE+LLLV L Sbjct: 62 HNLHVDQVRKPSLPTEELDDDTPIPAAHTSVSDGLEMRDLESALHSLPTEQREILLLVAL 121 Query: 135 EEMRYEEVAATLGIPTGTVMSRLSRARERLRQWMEG 170 EEM YEEVAATLG+P GTVMSRLSRAR++LR MEG Sbjct: 122 EEMSYEEVAATLGLPLGTVMSRLSRARQKLRTQMEG 157 >ref|YP_001101504.1| putative RNA polymerase sigma factor [Herminiimonas arsenicoxydans] emb|CAL63383.1| Putative RNA polymerase sigma factor [Herminiimonas arsenicoxydans] Length = 168 Score = 171 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 97/156 (62%), Positives = 115/156 (73%), Gaps = 1/156 (0%) Query: 16 QADEQAMLACLPRLRRYARALTGGRDSADDLVQDTLERAWQKLDSWQRGSDMRPWLFAIM 75 Q + ++AC+PRLRRYARAL G R ADDLVQDT+ER W+KL SWQRGSDMR WLF IM Sbjct: 2 QDERDRLIACIPRLRRYARALIGERTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGIM 61 Query: 76 HNLHADQRRQPTLVTVDLEQAADAAAPASLAEHGLAL-DLEAALQLLPAEQREVLLLVVL 134 HNLH DQ R+P ++T L+ + GL + DL++AL LP EQRE+LLLV L Sbjct: 62 HNLHIDQVRRPGIMTEVLDDDTPLPTSKATQADGLEMRDLQSALATLPPEQREILLLVAL 121 Query: 135 EEMRYEEVAATLGIPTGTVMSRLSRARERLRQWMEG 170 EEM YEEVA TLG+P GTVMSRLSRAR++LR MEG Sbjct: 122 EEMSYEEVATTLGLPLGTVMSRLSRARQKLRAHMEG 157 >ref|YP_283748.1| sigma-70 region 2:sigma-70 region 4 [Dechloromonas aromatica RCB] gb|AAZ45278.1| Sigma-70 region 2:Sigma-70 region 4 [Dechloromonas aromatica RCB] Length = 166 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 91/154 (59%), Positives = 111/154 (72%), Gaps = 1/154 (0%) Query: 18 DEQAMLACLPRLRRYARALTGGRDSADDLVQDTLERAWQKLDSWQRGSDMRPWLFAIMHN 77 D +A+LA LPRLRRYARA+ G R +ADDLVQDTLERAW ++ W++GSD+R WLF IMHN Sbjct: 2 DSRAILAELPRLRRYARAMLGDRAAADDLVQDTLERAWSRISQWRQGSDLRAWLFGIMHN 61 Query: 78 LHADQRRQPTLVTVDL-EQAADAAAPASLAEHGLALDLEAALQLLPAEQREVLLLVVLEE 136 L DQ R+ L L E AA+ + + +DLE+AL+ LP EQRE+LLLV LEE Sbjct: 62 LRIDQLRRAGLAITSLDEDAAEVPLRPTQTDRLELMDLESALRQLPDEQREILLLVALEE 121 Query: 137 MRYEEVAATLGIPTGTVMSRLSRARERLRQWMEG 170 M Y ++A LGIP GTVMSRLSR RERLR M+G Sbjct: 122 MSYADIATLLGIPIGTVMSRLSRGRERLRVVMDG 155 >ref|YP_934068.1| putative RNA polymerase sigma factor [Azoarcus sp. BH72] emb|CAL95181.1| putative RNA polymerase sigma factor [Azoarcus sp. BH72] Length = 166 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 97/169 (57%), Positives = 116/169 (68%), Gaps = 5/169 (2%) Query: 18 DEQAMLACLPRLRRYARALTGGRDSADDLVQDTLERAWQKLDSWQRGSDMRPWLFAIMHN 77 D A+LA LPRLRRYARAL G R +ADDLVQDTLERAW + W+ + +RPWLF IMHN Sbjct: 2 DGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHN 61 Query: 78 LHADQRRQPTLVTVDLE-QAADAAAPASLAEHGLALDLEAALQLLPAEQREVLLLVVLEE 136 L DQ R+P L T LE + + A+ ++ DL+AAL LP EQR VLLLV LE Sbjct: 62 LRIDQLRRPGLHTRPLEDEDFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEG 121 Query: 137 MRYEEVAATLGIPTGTVMSRLSRARERLRQWMEGPGGQGEAGATLKVVK 185 MRYE++AATLG+P GTVMSRLSR RERLR M G+ A L+VV+ Sbjct: 122 MRYEDIAATLGVPLGTVMSRLSRGRERLRAIM----GEAPAANRLRVVR 166