BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3284.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776099.1| transmembrane transcription regulator [Herba... 377 e-102 ref|YP_001101503.1| hypothetical protein HEAR3275 [Herminiimonas... 254 1e-65 ref|YP_001355193.1| PrtR transmembrane transcriptional regulator... 250 2e-64 ref|YP_283749.1| hypothetical protein Daro_0522 [Dechloromonas a... 216 3e-54 ref|YP_934069.1| hypothetical protein azo2565 [Azoarcus sp. BH72... 205 6e-51 >ref|YP_003776099.1| transmembrane transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ64191.1| transmembrane transcription regulator (anti-sigma factor) protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 218/283 (77%), Positives = 235/283 (83%), Gaps = 5/283 (1%) Query: 1 MKTPAFPEEDLHAYTDGQLPAARASEMAAWLEQDPAHAGDLHRVRAWRAQNRALHAHYDP 60 MKTPA PEEDLHA+ DGQLPAARASE+AAWLEQDP A +VR WR Q RALHAH+DP Sbjct: 1 MKTPAIPEEDLHAFADGQLPAARASEIAAWLEQDPTQAEAAEQVRDWRWQKRALHAHFDP 60 Query: 61 VLEEPLPPRLAAAVLAGAGEPHRRRDEAGEVAANGPFWWRYAAMLLLTLAGAAGGWLAHD 120 VLEE LPPRLAAAVLAGA +++ AAN WWR AAMLLL++A GGW HD Sbjct: 61 VLEEALPPRLAAAVLAGANH----QEQPRAPAANAARWWRMAAMLLLSMASGVGGWYLHD 116 Query: 121 LTGGGRARTLASAPVMLARQAAVAHTVFSADLRRPVEVGADQEQALVTWLSRRLGVNVRA 180 + GR AP++LARQAAVAH VFS DLRRPVEVGADQEQALVTWLSRRLG ++RA Sbjct: 117 IGDDGR-HARVQAPLVLARQAAVAHAVFSVDLRRPVEVGADQEQALVTWLSRRLGTSLRA 175 Query: 181 PKLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHDQVQNSETGFRFAQEGKV 240 PKLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSH+QVQN ETGFRFAQEGKV Sbjct: 176 PKLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHEQVQNRETGFRFAQEGKV 235 Query: 241 NVFYWIDGQFGYALSGGVARAELSRIASSVYEQLVPLPPAPSR 283 NVFYWIDGQFGYALSGG+ARAELSRIASSVYEQL PL +P R Sbjct: 236 NVFYWIDGQFGYALSGGIARAELSRIASSVYEQLSPLTSSPPR 278 >ref|YP_001101503.1| hypothetical protein HEAR3275 [Herminiimonas arsenicoxydans] emb|CAL63382.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 267 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 150/282 (53%), Positives = 192/282 (68%), Gaps = 28/282 (9%) Query: 1 MKTPAFPEEDLHAYTDGQLPAARASEMAAWLEQDPAHAGDLHRVRAWRAQNRALHAHYDP 60 M A E DLHAY DG L AAR++E+AA+L P +L R++A+RAQN AL ++P Sbjct: 1 MNQLAVTEADLHAYVDGVLSAARSAEVAAYLAARPE---ELARMQAYRAQNAALRELFNP 57 Query: 61 VLEEPLPPRLAAAVLAGAGEPHRRRDEAGEVAANGPFWWRYAAMLLLTLAGAAGGWLAHD 120 VL+EP+P RL+A ++ + + + RYAA LL+ + AGGW+ H Sbjct: 58 VLDEPVPSRLSAGLVNRSAQ-----------------FARYAAGLLIAIVSGAGGWMLHG 100 Query: 121 LTG----GGRARTLASAPVMLA---RQAAVAHTVFSADLRRPVEVGADQEQALVTWLSRR 173 T G + A +MLA RQA +AH V++ D+RRPVE+GADQE LV WLS+R Sbjct: 101 ATQTGMLAGSSVKNAHEQLMLAGFARQAVIAHGVYTPDVRRPVEIGADQEDQLVAWLSKR 160 Query: 174 LGVNVRAPKLAPLGYDLIGGRLLPGQSG-PVAQFMYQDAAGQRLTLYVSHDQVQNSETGF 232 G ++ PKL LGY+L+GGRLLPG+SG PVAQFMYQ+A GQRLTLYVS DQ Q+ +TGF Sbjct: 161 TGADMHPPKLGQLGYELVGGRLLPGESGSPVAQFMYQEAGGQRLTLYVSTDQAQSRDTGF 220 Query: 233 RFAQEGKVNVFYWIDGQFGYALSGGVARAELSRIASSVYEQL 274 RFAQ+G VNVFYWIDG+FGYALSGG+ + EL+RIA VYEQL Sbjct: 221 RFAQQGAVNVFYWIDGKFGYALSGGINKGELARIAHVVYEQL 262 >ref|YP_001355193.1| PrtR transmembrane transcriptional regulator (anti-sigma factor) [Janthinobacterium sp. Marseille] gb|ABR90187.1| PrtR transmembrane transcriptional regulator (anti-sigma factor) [Janthinobacterium sp. Marseille] Length = 264 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 147/273 (53%), Positives = 179/273 (65%), Gaps = 26/273 (9%) Query: 8 EEDLHAYTDGQLPAARASEMAAWLEQDPAHAGDLHRVRAWRAQNRALHAHYDPVLEEPLP 67 E +LHAY DG L R E+ A+L + P +L RV+A+RAQN L A + PVL+EP+P Sbjct: 8 EAELHAYVDGFLSEVRRREVEAYLAERPE---ELARVQAYRAQNEDLRALFQPVLDEPVP 64 Query: 68 PRLAAAVLAGAGEPHRRRDEAGEVAANGPFWWRYAAMLLLTLAGAAGGWLAHDLTGGGR- 126 RL A + + + RYAA LL+ +AG GGW+ H T Sbjct: 65 SRLTAGLQSWTQT-----------------YGRYAAGLLIAIAGGMGGWVLHGATQSNNL 107 Query: 127 ARTLASAPV-----MLARQAAVAHTVFSADLRRPVEVGADQEQALVTWLSRRLGVNVRAP 181 L ++P LARQAAVAH+V+S D RRPVEV A+QE LV WLS+R G +R P Sbjct: 108 VAQLNTSPAPLKVSTLARQAAVAHSVYSPDARRPVEVSAEQEDQLVAWLSKRTGSPMRPP 167 Query: 182 KLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHDQVQNSETGFRFAQEGKVN 241 KL LGY+LIGGRLLPG+SGPVAQFMYQ+ QRLTLYVS DQ QN +TGFRFAQEG VN Sbjct: 168 KLGKLGYELIGGRLLPGESGPVAQFMYQNDLQQRLTLYVSTDQAQNRDTGFRFAQEGAVN 227 Query: 242 VFYWIDGQFGYALSGGVARAELSRIASSVYEQL 274 VFYWIDG+FGYALS G+ + EL+ IA +VYEQL Sbjct: 228 VFYWIDGKFGYALSAGINKGELANIAHAVYEQL 260 >ref|YP_283749.1| hypothetical protein Daro_0522 [Dechloromonas aromatica RCB] gb|AAZ45279.1| conserved hypothetical protein [Dechloromonas aromatica RCB] Length = 264 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 141/276 (51%), Positives = 180/276 (65%), Gaps = 17/276 (6%) Query: 1 MKTPAFPEEDLHAYTDGQLPAARASEMAAWLEQDPAHAGDLHRVRAWRAQNRALHAHYDP 60 M + E++L AY D L + + A L +P GD RV A+RAQ +AL A + P Sbjct: 1 MTSQPITEDELQAYVDDALTPEWQAVLEAHLALNP---GDAERVVAYRAQKQALKALFQP 57 Query: 61 VLEEPLPPRLAAAVLAGAGEPHRRRDEAGEVAANGPFWWRYAAMLLLTLAGAAGGWLAHD 120 +L+EPLP RL + P G R AA LL+ G AGGWLAH Sbjct: 58 MLDEPLPERLQILTVQPLRAPTGGGWTGGLWQ-------RLAAGLLVAALGGAGGWLAHG 110 Query: 121 --LTGGGRARTLASAPVMLARQAAVAHTVFSADLRRPVEVGADQEQALVTWLSRRLGVNV 178 L G AR V L+ QAAVAH V+S D+RRPVE+ ADQE+ALV WLS+RLG V Sbjct: 111 QYLQGDRMARM-----VPLSHQAAVAHVVYSPDVRRPVEIAADQEEALVKWLSKRLGTPV 165 Query: 179 RAPKLAPLGYDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHDQVQNSETGFRFAQEG 238 R PKL LGY+L+GGRLLPG SGPVAQFMY DA+GQR+TLYV+ + ++ +TGFRFA+EG Sbjct: 166 RPPKLGALGYELVGGRLLPGNSGPVAQFMYHDASGQRMTLYVTTESIEKRDTGFRFAREG 225 Query: 239 KVNVFYWIDGQFGYALSGGVARAELSRIASSVYEQL 274 VNVFYW+DG+FGYALS G+ + EL+++A++VY+QL Sbjct: 226 PVNVFYWVDGKFGYALSAGIDKGELAKVATAVYDQL 261 >ref|YP_934069.1| hypothetical protein azo2565 [Azoarcus sp. BH72] emb|CAL95182.1| conserved hypothetical membrane protein [Azoarcus sp. BH72] Length = 272 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 132/267 (49%), Positives = 167/267 (62%), Gaps = 12/267 (4%) Query: 8 EEDLHAYTDGQLPAARASEMAAWLEQDPAHAGDLHRVRAWRAQNRALHAHYDPVLEEPLP 67 E DLHA+ D L R +E+ WL AH GD R+ +R QNRAL A +DPVLEEPLP Sbjct: 8 EGDLHAWADDLLADERRAEVEDWL---AAHPGDAARLHDYRLQNRALRAAFDPVLEEPLP 64 Query: 68 PRLAAAVLAGAGEPHRRRDEAGEVAANGPFWWRYAAMLLLTLAGAAGGWLAHDLTGGGRA 127 L A R A R AAM+ L + GA GWL H G A Sbjct: 65 AALRRAAALPPAASSPPRRWGSAPAL------RAAAMVALCVLGAVAGWLGHARFGTAPA 118 Query: 128 RTLASAPVMLARQAAVAHTVFSADLRRPVEVGADQEQALVTWLSRRLGVNVRAPKLAPLG 187 + A +RQAA+AH V++ ++RRPVEV E+ LV WLS+RLG + AP+L LG Sbjct: 119 ---SPAVAEFSRQAAIAHAVYTPEVRRPVEVDGAHEEQLVAWLSKRLGAPLHAPRLGALG 175 Query: 188 YDLIGGRLLPGQSGPVAQFMYQDAAGQRLTLYVSHDQVQNSETGFRFAQEGKVNVFYWID 247 ++L+GGRLLPGQ GPVA FMYQD +GQRLTLYVS + + + GFRFA+E V VFYW+D Sbjct: 176 FELVGGRLLPGQQGPVALFMYQDPSGQRLTLYVSGEVAGHGDAGFRFAEENGVKVFYWVD 235 Query: 248 GQFGYALSGGVARAELSRIASSVYEQL 274 G+FGYALS + +A L+RIA++VY+QL Sbjct: 236 GRFGYALSAAIDKARLARIATAVYDQL 262