BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3282.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_943125.1| hypothetical protein ND094 [Pseudomonas sp. ND6...   169   1e-40
gb|EGW61260.1| helix-turn-helix domain protein [Dechlorosoma sui...   168   2e-40
ref|ZP_08871365.1| hypothetical protein VeAt4_02017 [Verminephro...   168   3e-40
ref|YP_004027837.1| transcriptional regulator [Burkholderia rhiz...   167   5e-40
ref|YP_003776097.1| hypothetical protein Hsero_2693 [Herbaspiril...   162   2e-38

>ref|NP_943125.1| hypothetical protein ND094 [Pseudomonas sp. ND6]
 ref|YP_245480.1| hypothetical protein Rms149_p52 [Pseudomonas aeruginosa]
 ref|YP_003617100.1| hypothetical protein pDK1_p015 [Pseudomonas putida]
 gb|AAP44225.1| hypothetical protein ND094 [Pseudomonas sp. ND6]
 emb|CAI46986.1| hypothetical protein [Pseudomonas aeruginosa]
 dbj|BAJ06428.1| hypothetical protein [Pseudomonas putida]
          Length = 111

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/108 (79%), Positives = 99/108 (91%)

Query: 1   MQKTIVEGTDILRSSGNVFADLGLPDADKLRIKTGLVIEIRKAMRALGLSQQAAAQRMGI 60
           MQK I+EG ++ RSSGNVFADLGLPDA+KL+IKTGLV+EIR+AMRALGL+QQAAA+RMGI
Sbjct: 1   MQKRIIEGVEVQRSSGNVFADLGLPDAEKLKIKTGLVVEIRRAMRALGLTQQAAAKRMGI 60

Query: 61  PQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATATVGQLKL 108
           PQPKVSGMMRGDF+NLSERKLMDCLNRLGYDI+I+V PA   +G L L
Sbjct: 61  PQPKVSGMMRGDFTNLSERKLMDCLNRLGYDIEIKVRPAAEPIGHLTL 108


>gb|EGW61260.1| helix-turn-helix domain protein [Dechlorosoma suillum PS]
          Length = 111

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/108 (78%), Positives = 97/108 (89%)

Query: 1   MQKTIVEGTDILRSSGNVFADLGLPDADKLRIKTGLVIEIRKAMRALGLSQQAAAQRMGI 60
           M+K I+EG ++ RSSGNVFADLGLPDA+KL+IKTGLVIEIRKAMRAL L+QQAAA+RMGI
Sbjct: 1   MEKRIIEGVEVQRSSGNVFADLGLPDAEKLKIKTGLVIEIRKAMRALSLTQQAAAKRMGI 60

Query: 61  PQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATATVGQLKL 108
           PQPKVSGMM GDF+NLSERKLMDCLNRLGYDI+I+V PA   +G L L
Sbjct: 61  PQPKVSGMMHGDFTNLSERKLMDCLNRLGYDIEIKVRPAAEPIGHLTL 108


>ref|ZP_08871365.1| hypothetical protein VeAt4_02017 [Verminephrobacter sp. At4]
          Length = 111

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/108 (79%), Positives = 96/108 (88%)

Query: 1   MQKTIVEGTDILRSSGNVFADLGLPDADKLRIKTGLVIEIRKAMRALGLSQQAAAQRMGI 60
           MQK IVEG ++ RSSGNVFADLGLPDA+KL+IKTGLV+EIRKAMR LGL+QQAAA+RMGI
Sbjct: 1   MQKRIVEGVEVQRSSGNVFADLGLPDAEKLKIKTGLVVEIRKAMRTLGLTQQAAAKRMGI 60

Query: 61  PQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATATVGQLKL 108
           PQPKVS MM GDF+NLSERKLMDCLNRLGYDI+I+V PA   VG L L
Sbjct: 61  PQPKVSSMMHGDFTNLSERKLMDCLNRLGYDIEIKVRPAAEPVGHLTL 108


>ref|YP_004027837.1| transcriptional regulator [Burkholderia rhizoxinica HKI 454]
 emb|CBW73693.1| Transcriptional regulator [Burkholderia rhizoxinica HKI 454]
          Length = 111

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/110 (77%), Positives = 99/110 (90%)

Query: 1   MQKTIVEGTDILRSSGNVFADLGLPDADKLRIKTGLVIEIRKAMRALGLSQQAAAQRMGI 60
           MQK I++G ++ RSSGNVFADLGLPDA+KL+IKTGLV+EIRKAMRALGL+QQ AA+RMG+
Sbjct: 1   MQKRIIKGVEVQRSSGNVFADLGLPDAEKLKIKTGLVVEIRKAMRALGLTQQEAAKRMGV 60

Query: 61  PQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATATVGQLKLTV 110
           PQPKVSGMMRGDF+NLSERKLMDCLNRLGYDI+I+V PA   VG L L +
Sbjct: 61  PQPKVSGMMRGDFTNLSERKLMDCLNRLGYDIEIKVRPAAEPVGHLTLAL 110


>ref|YP_003776097.1| hypothetical protein Hsero_2693 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64189.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/110 (76%), Positives = 96/110 (87%)

Query: 1   MQKTIVEGTDILRSSGNVFADLGLPDADKLRIKTGLVIEIRKAMRALGLSQQAAAQRMGI 60
           MQ+  ++ T ILRSS NVFADLGLPDADKL+IKT LV+EIRKA+R LGL+QQAAA+RMGI
Sbjct: 4   MQRRTIDDTPILRSSDNVFADLGLPDADKLKIKTALVVEIRKALRTLGLTQQAAAKRMGI 63

Query: 61  PQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIDIRVCPATATVGQLKLTV 110
            QPKVSGMMRGDFSNLSERKLMDCLNRLGYDI+I++ P +A  G L LTV
Sbjct: 64  SQPKVSGMMRGDFSNLSERKLMDCLNRLGYDIEIKLHPTSAVQGHLTLTV 113