BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3281.p         (126 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGW61261.1| protein of unknown function DUF891 [Dechlorosoma ...   187   6e-46
ref|YP_003776096.1| hypothetical protein Hsero_2692 [Herbaspiril...   180   6e-44
ref|ZP_08871366.1| hypothetical protein VeAt4_02022 [Verminephro...   180   7e-44
ref|NP_061690.1| hypothetical protein XFa0034 [Xylella fastidios...   179   1e-43
ref|NP_943126.1| hypothetical protein ND095 [Pseudomonas sp. ND6...   176   9e-43

>gb|EGW61261.1| protein of unknown function DUF891 [Dechlorosoma suillum PS]
          Length = 125

 Score =  187 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 88/125 (70%), Positives = 108/125 (86%)

Query: 1   MFINEKPLEWIASSYKDLLALPAEVRQRFGFALSLAQMGERYEKTKILKGFSGAGVLEIL 60
           M  NEKPLEWIASSYKDL+ALP +VR+RFG+ALSLAQMG++ +  K+LKG+ GAGVLE++
Sbjct: 1   MADNEKPLEWIASSYKDLMALPPDVRRRFGYALSLAQMGDQDDAAKVLKGYGGAGVLEVV 60

Query: 61  EDHIGDTFRAVYTVKFEEAVFVLHCFQQKSKSGIATPQTDMEIIRTRLKIATARAEELRH 120
           ED +G T+RAVYTVKF EAVFVLHCFQ+KSKSGIATP+ DM+IIR RLK+A A A+ELR+
Sbjct: 61  EDDVGGTYRAVYTVKFAEAVFVLHCFQKKSKSGIATPKVDMDIIRARLKVAEAMAQELRN 120

Query: 121 HAKNN 125
              N+
Sbjct: 121 GKTNH 125


>ref|YP_003776096.1| hypothetical protein Hsero_2692 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64188.1| phage-related protein [Herbaspirillum seropedicae SmR1]
          Length = 128

 Score =  180 bits (457), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/127 (70%), Positives = 107/127 (84%), Gaps = 2/127 (1%)

Query: 1   MFINEKPLEWIASSYKDLLALPAEVRQRFGFALSLAQMGERYEKTKILKGFSGAGVLEIL 60
           M   EKPLEWI SSYKDL+ALP+ +RQRFG+ALSLAQ+G+R +  K+L+GF  AGVLEI+
Sbjct: 1   MHGKEKPLEWIGSSYKDLMALPSAIRQRFGYALSLAQLGDRDDAAKVLRGFGDAGVLEII 60

Query: 61  EDHIGDTFRAVYTVKFEEAVFVLHCFQQKSKSGIATPQTDMEIIRTRLKIATARAEELRH 120
           ED    T+RAVY ++FEEAVFVLHCFQ+KSK GIATP+TD++IIRTRLK+A ARAEELRH
Sbjct: 61  EDEASGTYRAVYVIRFEEAVFVLHCFQKKSKHGIATPKTDIDIIRTRLKVAAARAEELRH 120

Query: 121 --HAKNN 125
             HAK N
Sbjct: 121 ARHAKKN 127


>ref|ZP_08871366.1| hypothetical protein VeAt4_02022 [Verminephrobacter sp. At4]
          Length = 125

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 89/122 (72%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 5   EKPLEWIASSYKDLLALPAEVRQRFGFALSLAQMGERYEKTKILKGFSGAGVLEILEDHI 64
           EKPLEWIASSYK L+ALP +VR RFG+ALSLAQMG++ +  K+LKGF GAGVLE++ED  
Sbjct: 5   EKPLEWIASSYKALMALPPDVRHRFGYALSLAQMGDQDDAAKVLKGFGGAGVLEVVEDDA 64

Query: 65  GDTFRAVYTVKFEEAVFVLHCFQQKSKSGIATPQTDMEIIRTRLKIATARAEELRHHAKN 124
           G T+RAVYTVKF EAVFVLHCFQ+KSKSGIATP+ DM+IIR RLK+A A A+ELR +AK 
Sbjct: 65  GGTYRAVYTVKFAEAVFVLHCFQKKSKSGIATPKVDMDIIRARLKVAEAMAQELR-NAKT 123

Query: 125 NR 126
           NR
Sbjct: 124 NR 125


>ref|NP_061690.1| hypothetical protein XFa0034 [Xylella fastidiosa 9a5c]
 gb|AAF85603.1|AE003851_34 conserved hypothetical protein [Xylella fastidiosa 9a5c]
          Length = 139

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 85/123 (69%), Positives = 103/123 (83%)

Query: 3   INEKPLEWIASSYKDLLALPAEVRQRFGFALSLAQMGERYEKTKILKGFSGAGVLEILED 62
           I EKPLEWIASSYKDL+ALP +VR+RFG+ALSLAQ G++ +  K+LKGF GAGVLE++ED
Sbjct: 17  IIEKPLEWIASSYKDLMALPPDVRRRFGYALSLAQRGDQDDAAKVLKGFGGAGVLEVVED 76

Query: 63  HIGDTFRAVYTVKFEEAVFVLHCFQQKSKSGIATPQTDMEIIRTRLKIATARAEELRHHA 122
             G T+R VYTVKF EAVFVLHCFQ+KSKSG+ATP+ DM IIR RLK+A A A+ELR+  
Sbjct: 77  DAGGTYRTVYTVKFTEAVFVLHCFQKKSKSGVATPKVDMNIIRARLKVAEALAQELRNAK 136

Query: 123 KNN 125
            N+
Sbjct: 137 TNH 139


>ref|NP_943126.1| hypothetical protein ND095 [Pseudomonas sp. ND6]
 ref|YP_003617099.1| hypothetical protein pDK1_p014 [Pseudomonas putida]
 gb|AAP44226.1| hypothetical protein ND095 [Pseudomonas sp. ND6]
 dbj|BAJ06427.1| hypothetical protein [Pseudomonas putida]
          Length = 125

 Score =  176 bits (447), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 84/121 (69%), Positives = 105/121 (86%)

Query: 5   EKPLEWIASSYKDLLALPAEVRQRFGFALSLAQMGERYEKTKILKGFSGAGVLEILEDHI 64
           EKPLEWIASS+KDL+ALP++VR+RFG+ALSLAQ+G++ +  K+LKGF GAGVLE++ED  
Sbjct: 5   EKPLEWIASSHKDLMALPSDVRRRFGYALSLAQIGDQDDAAKVLKGFGGAGVLEVVEDDA 64

Query: 65  GDTFRAVYTVKFEEAVFVLHCFQQKSKSGIATPQTDMEIIRTRLKIATARAEELRHHAKN 124
           G T+RAVYTVKF EAVFVLHCFQ+KSKSGIATP+ DM+IIR RLK+A   A+ELR+   N
Sbjct: 65  GGTYRAVYTVKFAEAVFVLHCFQKKSKSGIATPKADMDIIRARLKVAEVLAQELRNAKTN 124

Query: 125 N 125
           +
Sbjct: 125 H 125