BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3280.p         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776095.1| hypothetical protein Hsero_2691 [Herbaspiril...    68   5e-10
ref|YP_003883949.1| hypothetical protein Dda3937_02401 [Dickeya ...    61   7e-08
ref|YP_003258743.1| hypothetical protein Pecwa_1331 [Pectobacter...    59   2e-07
ref|ZP_03826505.1| hypothetical protein PcarbP_07794 [Pectobacte...    59   3e-07
ref|YP_003018506.1| hypothetical protein PC1_2947 [Pectobacteriu...    55   3e-06

>ref|YP_003776095.1| hypothetical protein Hsero_2691 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64187.1| hypothetical protein Hsero_2691 [Herbaspirillum seropedicae SmR1]
          Length = 62

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 59/62 (95%)

Query: 1  MDVNQIASLATSMAAAKTSDSVNVLMLKKALDSQASAAVGLLQALPPLPANPNIGRNVNT 60
          MDVNQIASLATSMA A+TSD VN+LMLKKAL++QA+A VG+LQALPP+PANPNIGRNVNT
Sbjct: 1  MDVNQIASLATSMATAQTSDQVNILMLKKALNTQAAAVVGVLQALPPVPANPNIGRNVNT 60

Query: 61 TA 62
          TA
Sbjct: 61 TA 62


>ref|YP_003883949.1| hypothetical protein Dda3937_02401 [Dickeya dadantii 3937]
 gb|ADM99392.1| hypothetical protein Dda3937_02401 [Dickeya dadantii 3937]
          Length = 115

 Score = 60.8 bits (146), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 46/62 (74%)

Query: 1   MDVNQIASLATSMAAAKTSDSVNVLMLKKALDSQASAAVGLLQALPPLPANPNIGRNVNT 60
           MDV+QIASL+T ++  + S  ++  +LKK+LD+Q      L+Q++P LPANP IGRN+NT
Sbjct: 54  MDVSQIASLSTGLSNMQLSSEISTSVLKKSLDNQKDTVASLIQSIPQLPANPAIGRNINT 113

Query: 61  TA 62
           TA
Sbjct: 114 TA 115


>ref|YP_003258743.1| hypothetical protein Pecwa_1331 [Pectobacterium wasabiae WPP163]
 gb|ACX87136.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 62

 Score = 58.9 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 1  MDVNQIASLATSMAAAKTSDSVNVLMLKKALDSQASAAVGLLQALPPLPANPNIGRNVNT 60
          MDV+QIASLAT ++  +TS   + L++KKALDSQ +  +G+LQALPPLPANP IGRNVNT
Sbjct: 1  MDVSQIASLATDLSNLRTSSEASTLVMKKALDSQEAVVLGILQALPPLPANPAIGRNVNT 60

Query: 61 TA 62
          TA
Sbjct: 61 TA 62


>ref|ZP_03826505.1| hypothetical protein PcarbP_07794 [Pectobacterium carotovorum
          subsp. brasiliensis PBR1692]
          Length = 62

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/62 (69%), Positives = 52/62 (83%)

Query: 1  MDVNQIASLATSMAAAKTSDSVNVLMLKKALDSQASAAVGLLQALPPLPANPNIGRNVNT 60
          MDV+QIASLAT ++  +TS   + L+LKKALDSQ + A+G+LQALPPLPANP IGRNVNT
Sbjct: 1  MDVSQIASLATDLSNMRTSSEASALVLKKALDSQEAVALGILQALPPLPANPAIGRNVNT 60

Query: 61 TA 62
          TA
Sbjct: 61 TA 62


>ref|YP_003018506.1| hypothetical protein PC1_2947 [Pectobacterium carotovorum subsp.
          carotovorum PC1]
 gb|ACT13970.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
          carotovorum PC1]
          Length = 62

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 49/62 (79%)

Query: 1  MDVNQIASLATSMAAAKTSDSVNVLMLKKALDSQASAAVGLLQALPPLPANPNIGRNVNT 60
          MDV+QI+S A+ ++  +TS   + LM+KKA+D+Q +   G+L+ALPPLPANP IGRNVNT
Sbjct: 1  MDVSQISSFASDLSTMRTSSEASALMVKKAIDNQEAVVSGILKALPPLPANPAIGRNVNT 60

Query: 61 TA 62
          TA
Sbjct: 61 TA 62