BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3278.p (445 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776093.1| HipA-like protein [Herbaspirillum seropedica... 782 0.0 ref|YP_004752602.1| HipA-like protein [Collimonas fungivorans Te... 310 2e-82 ref|ZP_08874170.1| HipA-like protein [Verminephrobacter sp. At4] 305 8e-81 ref|YP_549463.1| HipA-like protein [Polaromonas sp. JS666] >gi|9... 298 2e-78 ref|YP_004619733.1| hypothetical protein Rta_26130 [Ramlibacter ... 297 3e-78 >ref|YP_003776093.1| HipA-like protein [Herbaspirillum seropedicae SmR1] gb|ADJ64185.1| HipA-like protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 403/427 (94%), Positives = 414/427 (96%) Query: 1 MSMLRSLRIRLGQTEVGSLFSLDDGRCYFRFDDAYALQGDDRPVLSQLYLASTEERTRAQ 60 MSMLRSLRIRLGQTEVGSLF+LDDGRCYFRFDDAYALQG RPVLSQLY ASTEERTRAQ Sbjct: 1 MSMLRSLRIRLGQTEVGSLFALDDGRCYFRFDDAYALQGPQRPVLSQLYSASTEERTRAQ 60 Query: 61 LLDPTLAANRGDGRGGLPPFFQNLLPEGQLRKHLIQRAGLAPDDEFGLLAYCGRDLPGDV 120 LLDPTLAANRGDGRGGLPPFFQNLLPEGQLRKHL+QRAGLAPDDEFGLLAYCGRDLPGDV Sbjct: 61 LLDPTLAANRGDGRGGLPPFFQNLLPEGQLRKHLVQRAGLAPDDEFGLLAYCGRDLPGDV 120 Query: 121 SALAEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRESGGRYVMRSK 180 SA AEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRE+GGRYVMRSK Sbjct: 121 SASAEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVREAGGRYVMRSK 180 Query: 181 DSQGSHFIAKLPATDYPNMPQVEFASLTLAAAAGVQTCRFSLEPLSAIGDHLPFGLRNDA 240 DS GSHFIAKLPATDYPNMPQVEF+SLTLAAAAGV TCRFSLEPLSAI +HLPFGLRNDA Sbjct: 181 DSHGSHFIAKLPATDYPNMPQVEFSSLTLAAAAGVHTCRFSLEPLSAIAEHLPFGLRNDA 240 Query: 241 SRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPAAKYVGTYAAIGVVLLERSTRGAEDVY 300 SRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAP AKYVG+YAAIGVVLLERSTRG EDVY Sbjct: 241 SRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPGAKYVGSYAAIGVVLLERSTRGVEDVY 300 Query: 301 ELLRRIKVNELLGNFDAHLKNFSLLYHTPQQAALSPAYDIVAYAAYVGGDGHALAFVPGQ 360 ELLRRIKVNELLGNFDAHLKNFSLLYHTPQ AALSPAYDIVAYAAYVGGDGHALAFVPGQ Sbjct: 301 ELLRRIKVNELLGNFDAHLKNFSLLYHTPQAAALSPAYDIVAYAAYVGGDGHALAFVPGQ 360 Query: 361 KGKQLLTPAILRQLANLWRLPEPRLQAVLVDTVERAMTQWPALIESLPFTDAQRGKLLAH 420 KGKQLLTPAILRQLANLWR+PEP+LQAVLVDTVERAMTQWPALI SLP TDAQR +LL+H Sbjct: 361 KGKQLLTPAILRQLANLWRIPEPKLQAVLVDTVERAMTQWPALIASLPLTDAQRTRLLSH 420 Query: 421 LEANASV 427 L+ANASV Sbjct: 421 LDANASV 427 >ref|YP_004752602.1| HipA-like protein [Collimonas fungivorans Ter331] gb|AEK61779.1| HipA-like protein [Collimonas fungivorans Ter331] Length = 437 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 194/435 (44%), Positives = 250/435 (57%), Gaps = 9/435 (2%) Query: 4 LRSLRIRLGQTEVGSLFSLDDGRCYFRFDDAYALQGDDRPVLSQLYLASTEERTRAQLLD 63 L +L I + + G LF D F+ D AYA Q RP LS A+T ++ A LL+ Sbjct: 3 LSALDIFVAERLAGVLFQYGD-MVRFQVDPAYA-QDPQRPTLSLSMRAATPQQDMALLLN 60 Query: 64 PTLAANRGDGRGGLPPFFQNLLPEGQLRKHLIQRAGLAPDDEFGLLAYCGRDLPGDVSAL 123 P A G+ LP FFQNLLPEG LRK + A DD F LLA CGRDLPG V A+ Sbjct: 61 PLAAIFNSPGQMRLPAFFQNLLPEGVLRKQIALERKCAEDDHFELLAACGRDLPGAVRAI 120 Query: 124 AEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRESGGRYVMRSKDSQ 183 L + RL+ Q ++ E S P+ G S+SG+QPKLAL+ E GGRYV R++ + Sbjct: 121 PTRLTRATMTRLVTQDKEAIEESVSAAPLVDGVSISGMQPKLALILE-GGRYVSRTR-HK 178 Query: 184 GSHFIAKLPATDYPNMPQVEFASLTLAAAAGVQTCRFSLEPLSAIGDHLPFGLRNDASRF 243 +H I KLP Y ++P+VE SL LA AAGV C SL+PL+AI P D+ +F Sbjct: 179 DAHIIGKLPTAQYDHLPEVEHLSLQLAQAAGVTVCSASLQPLAAIMAEHPHAAE-DSQQF 237 Query: 244 LLVQRFDRDAPTPTGRLHMEDFAQVTGTAPAAKYVG-TYAAIGVVLLERSTRGAEDVYEL 302 L VQRFDRD P GRLH+EDF Q+ G P KY G +YA + +V+ G +EL Sbjct: 238 LAVQRFDRDQP---GRLHVEDFCQILGVDPDKKYTGASYADMALVMQAVPGLGTAACHEL 294 Query: 303 LRRIKVNELLGNFDAHLKNFSLLYHTPQQAALSPAYDIVAYAAYVGGDGHALAFVPGQKG 362 LRRI VNEL+GN+DAHLKNF + Y SPAYDIVAY+ Y+ G GHAL F GQ Sbjct: 295 LRRIAVNELIGNYDAHLKNFGIRYLADGSIEFSPAYDIVAYSVYLNGSGHALKFAEGQAK 354 Query: 363 KQLLTPAILRQLANLWRLPEPRLQAVLVDTVERAMTQWPALIESLPFTDAQRGKLLAHLE 422 + L+P LR AN L EP L+ V+ + ++A+ WPALI + Q+ +L + Sbjct: 355 RSFLSPLSLRAFANRSGLLEPPLRQVISEVCKKALATWPALIAASQLLPHQKTRLTEYFM 414 Query: 423 ANASVAAWRRRAARR 437 +A R R AR+ Sbjct: 415 GRDIIAGLRARQARQ 429 >ref|ZP_08874170.1| HipA-like protein [Verminephrobacter sp. At4] Length = 441 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 189/442 (42%), Positives = 256/442 (57%), Gaps = 17/442 (3%) Query: 5 RSLRIRLGQTE--VGSLFSLDDGRCYFRF---DDAYALQGDDRPVLSQLYLASTEERTRA 59 R+L + LG + VG L+ GR D Y G PV SQ + + RA Sbjct: 4 RALHVFLGTRKRFVGQLYQYGTGRTAITRLVPDPDYWSDGA-APVFSQNARVA-DAHARA 61 Query: 60 QLLDPTLAANRGDGRG-GLPPFFQNLLPEGQLRKHLIQRAGLAPDDEFGLLAYCGRDLPG 118 L + +G G LP FFQNLLPEG LR+HL + L D+FGLL+ CG DLPG Sbjct: 62 MFLAEYIVQPFFNGEGENLPIFFQNLLPEGLLRRHLEEIGNLDKGDDFGLLSLCGTDLPG 121 Query: 119 DVSALAEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRESGGRYVMR 178 V LD++ + R++ Q +D+ E + + +P SLSGVQPKL+LV ++ GRYV R Sbjct: 122 AVCVEQAPLDKQSVARVVTQNNDTLEPTVTPVALPEATSLSGVQPKLSLV-QAAGRYVAR 180 Query: 179 SKDSQGSHFIAKLPATDYPNMPQVEFASLTLAAAAGVQTCRFSLEPLSAIGDHLPFGLRN 238 +K+ +G H IAKLP +YP +P+VE S+ LAA AGV C L PL I PF L Sbjct: 181 TKNPRGVHIIAKLPTVEYPLLPRVEELSMQLAAVAGVHVCEVELAPLENIDADQPFVL-G 239 Query: 239 DASRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPAAKY---VGTYAAIGVVLLERSTRG 295 + +FL V+RFDRD T +H EDFAQ+ G P KY + TY+ + +L++ G Sbjct: 240 EGKQFLAVRRFDRDG---TKHIHCEDFAQILGVPPEQKYSHPLATYSTMLRILVQTPELG 296 Query: 296 AEDVYELLRRIKVNELLGNFDAHLKNFSLLYHTPQQAALSPAYDIVAYAAYVGGDGHALA 355 E YE+LRRI VN+LLGNFD HLKN+ LLY LSPAYD+VAYAAY+ G GHAL Sbjct: 297 LEAGYEMLRRIVVNDLLGNFDGHLKNYGLLYRDGSTPELSPAYDVVAYAAYLSGRGHALG 356 Query: 356 FVPGQKGKQLLTPAILRQLAN-LWRLPEPRLQAVLVDTVERAMTQWPALIESLPFTDAQR 414 F P ++P ++R+L N + L EP + +++ +TV +A WP +I + D Q+ Sbjct: 357 FTPDGPRHARVSPQVIRRLCNEVPGLLEPMVNSIVKETVRKAYAAWPDMIAASTVLDEQK 416 Query: 415 GKLLAHLEANASVAAWRRRAAR 436 +LL H EA ++ + RRRA R Sbjct: 417 ARLLKHFEATPAIESLRRRALR 438 >ref|YP_549463.1| HipA-like protein [Polaromonas sp. JS666] gb|ABE44565.1| HipA-like protein [Polaromonas sp. JS666] Length = 447 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 194/436 (44%), Positives = 248/436 (56%), Gaps = 19/436 (4%) Query: 6 SLRIRLGQTEVGSLFSLDDGRCYF-RF-DDAYALQGDDRPVLSQLYLASTEERTRAQLLD 63 +L I +G G LF G RF D D PVLS + A+ ++ R ++ Sbjct: 5 ALDIYVGSLRAGLLFQYGTGSTALTRFIPDPSFWSRPDAPVLS--WAATDDDPQRREIFW 62 Query: 64 PTLAAN---RGDGRGGLPPFFQNLLPEGQLRKHLIQRAGLAPDDEFGLLAYCGRDLPGDV 120 + + +G G LP FFQNLLPEG LR+HL + G P D F LLA CG DLPG+V Sbjct: 63 RSYVSTPFFNAEG-GRLPAFFQNLLPEGPLRRHLEELRGCGPGDHFDLLAACGTDLPGNV 121 Query: 121 SALAEELDERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRESGGRYVMRSK 180 A LD L ++ Q +D+ EMS P+P SLSGVQPKLALV + G RYV R++ Sbjct: 122 YAYPAHLDADALAAVVTQHNDALEMSVTADPLPEATSLSGVQPKLALVAQHG-RYVARTR 180 Query: 181 DSQGSHFIAKLPATDYPNMPQVEFASLTLAAAAGVQTCRFSLEPLSAIGDHLPFGLRNDA 240 D QG+H IAKLP +Y +P+VE SL LA AAG C L PL I PF L ++ Sbjct: 181 DVQGTHIIAKLPTVEYALLPEVEELSLRLAQAAGADVCAAWLAPLEQIVAEQPFVL-GES 239 Query: 241 SRFLLVQRFDRDAPTPTGRLHMEDFAQVTGTAPAAKYV---GTYAAIGVVL---LERSTR 294 FL+V+RFDR P G +H EDFAQ+ P KY TYA + L + R Sbjct: 240 RHFLVVRRFDRG---PGGHIHCEDFAQILRIQPEEKYTHPAATYATMASTLRGGMGLGQR 296 Query: 295 GAEDVYELLRRIKVNELLGNFDAHLKNFSLLYHTPQQAALSPAYDIVAYAAYVGGDGHAL 354 G EL+RR VNE+LGN+DAH+KNF +LY + LSPAYD+VAYAAY+GG GHAL Sbjct: 297 GEAAAEELIRRAMVNEMLGNYDAHVKNFGVLYRDGRTPELSPAYDVVAYAAYLGGRGHAL 356 Query: 355 AFVPGQKGKQLLTPAILRQLANLWRLPEPRLQAVLVDTVERAMTQWPALIESLPFTDAQR 414 FVPG + + LTP +R N + E R++ VL D V +A WP+LIE+ D Q+ Sbjct: 357 RFVPGGEKQARLTPQTVRSFCNATGMFETRVRGVLNDAVGKACASWPSLIEASSLLDKQK 416 Query: 415 GKLLAHLEANASVAAW 430 LL H EA +V +W Sbjct: 417 HNLLRHFEACDAVQSW 432 >ref|YP_004619733.1| hypothetical protein Rta_26130 [Ramlibacter tataouinensis TTB310] gb|AEG93714.1| Conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 435 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 183/372 (49%), Positives = 233/372 (62%), Gaps = 13/372 (3%) Query: 69 NRGDGRGGLPPFFQNLLPEGQLRKHLIQRAGLAPDDEFGLLAYCGRDLPGDVSALAEELD 128 N DGR LP FFQN+LPEG LR+HL Q G DD F +LA CG DLPG V A +L Sbjct: 72 NGQDGR--LPAFFQNMLPEGLLRRHLAQLRGCREDDHFEILATCGADLPGAVYARPAQLV 129 Query: 129 ERGLGRLLGQGHDSYEMSSGQLPVPGGESLSGVQPKLALVRESGGRYVMRSKDSQGSHFI 188 + R++ QGHD+ E++ PV SLSG+QPKL+LV + GGRYV R++D+QG H I Sbjct: 130 RDEVERIVTQGHDALEVAVTAEPVAEATSLSGIQPKLSLVLQ-GGRYVQRTRDAQGLHTI 188 Query: 189 AKLPATDYPNMPQVEFASLTLAAAAGVQTCRFSLEPLSAIGDHLPFGLRNDASRFLLVQR 248 AKLP ++P +P+VE SL LAAAAGV+ C+ LEPL+AI +PF L A +FL V R Sbjct: 189 AKLPTVEFPLLPEVEALSLQLAAAAGVEVCQARLEPLAAIAGEVPFEL-GGARQFLAVTR 247 Query: 249 FDRDAPTPTGR--LHMEDFAQVTGTAPAAKY---VGTYAAIGVVLLERSTRGAEDVYELL 303 FDR GR +H EDFAQV G P KY YA + ++L+ G ELL Sbjct: 248 FDRRG----GRDHVHCEDFAQVLGIQPERKYGDDSACYAIMAQLMLQTPALGEAAAVELL 303 Query: 304 RRIKVNELLGNFDAHLKNFSLLYHTPQQAALSPAYDIVAYAAYVGGDGHALAFVPGQKGK 363 RRI VNELLGN+DAH+KNF L+Y + L+PAYD+VAYAAY+GG GHAL F PG + + Sbjct: 304 RRIAVNELLGNYDAHVKNFGLVYQDGRTPRLAPAYDVVAYAAYLGGRGHALRFTPGGQTQ 363 Query: 364 QLLTPAILRQLANLWRLPEPRLQAVLVDTVERAMTQWPALIESLPFTDAQRGKLLAHLEA 423 L+P ILR+ + L EP + + V+RA WP LI + D Q+ +LLAHL + Sbjct: 364 ARLSPRILREFCSFCGLAEPIAHSTVRQVVKRAAAAWPDLINASGLLDGQKQRLLAHLAS 423 Query: 424 NASVAAWRRRAA 435 V + RRRA Sbjct: 424 MPMVQSLRRRAG 435