BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3277.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776092.1| 23S RNA-specific pseudouridylate synthase [H... 535 e-150 ref|YP_004754175.1| ribosomal large subunit pseudouridine syntha... 332 6e-89 ref|YP_001355201.1| RNA pseudouridylate synthase family protein ... 287 1e-75 ref|YP_523152.1| pseudouridine synthase [Rhodoferax ferrireducen... 279 3e-73 ref|YP_004417764.1| pseudouridine synthase [Pusillimonas sp. T7-... 279 4e-73 >ref|YP_003776092.1| 23S RNA-specific pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ64184.1| 23S RNA-specific pseudouridylate synthase protease protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 278/299 (92%), Positives = 289/299 (96%) Query: 1 MRPTPTLPMREGLSPSYLWLQPGPWRDMLSFLAERFTAVPESIWRERLLRGEVRNQHGEA 60 MRPTPTLPMREGLSPSYLWLQPGPWR MLSFLAERFTAVPE +WRERLLRGEVRNQHGEA Sbjct: 1 MRPTPTLPMREGLSPSYLWLQPGPWRTMLSFLAERFTAVPEPVWRERLLRGEVRNQHGEA 60 Query: 61 LRPESPYRSGDCIFYYRELPEGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQET 120 L+P++PYRSGDCIFYYRELP+GEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQET Sbjct: 61 LQPDTPYRSGDCIFYYRELPQGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQET 120 Query: 121 LLVRLKKATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRSMFKVYEAIAPLR 180 LLVRLKKATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQR+MFKVYEAIAPLR Sbjct: 121 LLVRLKKATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRAMFKVYEAIAPLR 180 Query: 181 PDLALPRVHRSRVEEIPEQFFKMHEAEGTPNSETHISLLEQRGEFGLYQLEPVTGRRHQL 240 DL LPRVHRSRVEEIPEQFFKMHEAEG PNSETHISL+E RG GLY+LEPVTGRRHQL Sbjct: 181 SDLELPRVHRSRVEEIPEQFFKMHEAEGAPNSETHISLIEARGALGLYRLEPVTGRRHQL 240 Query: 241 RVHMASLGIPILNDLFYPHAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFVSQRSL 299 RVHMA+LGIPILNDLFYP AVPVGVADDLDKPLKLLARSLFFIDPLDGSERHF S+R+L Sbjct: 241 RVHMAALGIPILNDLFYPEAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFSSERNL 299 >ref|YP_004754175.1| ribosomal large subunit pseudouridine synthase A-like protein [Collimonas fungivorans Ter331] gb|AEK63352.1| ribosomal large subunit pseudouridine synthase A-like protein [Collimonas fungivorans Ter331] Length = 307 Score = 332 bits (850), Expect = 6e-89, Method: Composition-based stats. Identities = 184/298 (61%), Positives = 216/298 (72%), Gaps = 6/298 (2%) Query: 3 PTPTLPMREGLSPSYLWLQPGPWRDMLSFLAERFTAVPESIWRERLLRGEVRNQHGEALR 62 P P LP+ +G++PSYLWL G W D+LSFL +RF A+ + W R+ RGEV + G L Sbjct: 15 PAP-LPVIDGVAPSYLWLPAGEWPDLLSFLEQRFPAISSATWVARMARGEVVDGEGVRLA 73 Query: 63 PESPYRSGDCIFYYRELPEGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQETLL 122 P SPYR G IFYYRELP E IP E IL+ D+ +LVADKPHFLPVIP+GRF+ ETLL Sbjct: 74 PGSPYRRGMRIFYYRELP-AETPIPFEASILYQDERILVADKPHFLPVIPSGRFLHETLL 132 Query: 123 VRLKKATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRSMFKVYEAIAPLRPD 182 VRLKK TGL DL PIHRLDRETAGV++FSH ASRG YQS+FQQR + K YEA+AP P Sbjct: 133 VRLKKQTGLADLTPIHRLDRETAGVVIFSHDVASRGAYQSLFQQRLVDKTYEALAPSAPG 192 Query: 183 LALPRVHRSR-VEEIPEQFFKMHEAEGTPNSETHISLLEQRGEFGLYQLEPVTGRRHQLR 241 L LP V+RSR VE P FF+M E G PNSET I L+EQR Y+L P+TG++HQLR Sbjct: 193 LVLPLVYRSRMVEGTP--FFRMQEVAGEPNSETRIELIEQRETCSRYRLRPLTGKKHQLR 250 Query: 242 VHMASLGIPILNDLFYPHAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFVSQRSL 299 VH+A+LGIPI+ND FYP P DDL PLKLLAR + F+DPLDG RHF SQR L Sbjct: 251 VHLAALGIPIINDAFYPEVHPCK-GDDLSAPLKLLAREIAFVDPLDGRRRHFASQREL 307 >ref|YP_001355201.1| RNA pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] gb|ABR90079.1| RNA pseudouridylate synthase family protein [Janthinobacterium sp. Marseille] Length = 316 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 153/293 (52%), Positives = 205/293 (69%), Gaps = 3/293 (1%) Query: 8 PMREGLSPSYLWLQPGPWRDMLSFLAERFTAVPESIWRERLLRGEVRNQHGEALRPESPY 67 P ++G+ PS + L G W +L+FL E F A+P + W R+ RG+V + G L P+S Y Sbjct: 24 PSKDGVGPSSVALPAGTWPSILAFLTEHFPAIPHAEWLARMQRGDVIDAAGRLLTPDSIY 83 Query: 68 RSGDCIFYYRELPEGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQETLLVRLKK 127 + I+YYR LP+ E RIP +E +L+ DD+L+ DKPHFLPV P GR++QETLLVRLK+ Sbjct: 84 QPHSKIYYYRSLPD-EPRIPFDEVVLYQDDYLVAVDKPHFLPVTPAGRYLQETLLVRLKR 142 Query: 128 ATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRSMFKVYEAIAPLRPDLALPR 187 + + L P+HR+DRETAG+++F+ QP +R YQ++F++RS+ K YEAIAPLR DL LP Sbjct: 143 SLDIDTLAPMHRIDRETAGLVLFTIQPQTRNLYQTLFRERSVSKEYEAIAPLRADLELPT 202 Query: 188 VHRSRVEEIPEQFFKMHEAEGTPNSETHISLLEQRGEFGLYQLEPVTGRRHQLRVHMASL 247 +RSR+ E E F KM E G NSET ISLLE RG FG Y L+PV+G++HQLR HMA+L Sbjct: 203 TYRSRLLE-SEAFMKMCEVAGEANSETAISLLETRGNFGRYLLQPVSGQKHQLRAHMAAL 261 Query: 248 GIPILNDLFYPHAVP-VGVADDLDKPLKLLARSLFFIDPLDGSERHFVSQRSL 299 GIPI+ND YPH P G D +PL+LLA+S+ F DPL G F S+++L Sbjct: 262 GIPIVNDRIYPHLYPDEGATQDYSQPLQLLAKSISFTDPLSGKLHRFDSRQAL 314 >ref|YP_523152.1| pseudouridine synthase [Rhodoferax ferrireducens T118] gb|ABD69621.1| pseudouridine synthase [Rhodoferax ferrireducens T118] Length = 302 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 146/292 (50%), Positives = 198/292 (67%), Gaps = 3/292 (1%) Query: 8 PMREGLSPSYLWLQPGPWRDMLSFLAERFTAVPESIWRERLLRGEVRNQHGEALRPESPY 67 P R G+ PS + L G W L FL ERF+A+P +W +R+ +G+V ++HG L P S Y Sbjct: 10 PARNGVGPSCIGLPAGAWPTTLDFLTERFSAIPRDVWHQRMAQGDVVDEHGVQLAPHSAY 69 Query: 68 RSGDCIFYYRELPEGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQETLLVRLKK 127 + ++YYR +P+ E RIP +E IL D+ L+V DKPHFLPV+P+G ++ ET+LVRLK+ Sbjct: 70 QGHRRVYYYRAVPD-EPRIPFDEVILFQDEQLIVVDKPHFLPVMPSGGYLAETVLVRLKQ 128 Query: 128 ATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRSMFKVYEAIAPLRPDLALPR 187 G+ LVP+HR+DR+TAG+++FS QP +R Y ++F QRS+ K YEAIAP R LALP Sbjct: 129 KLGIDTLVPVHRIDRDTAGLVMFSVQPETRAAYHALFSQRSVKKTYEAIAPWREGLALPM 188 Query: 188 VHRSRVEEIPEQFFKMHEAEGTPNSETHISLLEQRGEFGLYQLEPVTGRRHQLRVHMASL 247 +SR+ E F HE G PN+ T I +L+ +G YQL+PVTG+RHQLRVHMA+L Sbjct: 189 TRQSRIVE-AGHFMLQHEVSGPPNTVTRIEVLQVQGGLARYQLQPVTGKRHQLRVHMAAL 247 Query: 248 GIPILNDLFYPHAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFVSQRSL 299 G+PIL D YP P G D + PL+LLAR + F+DP+ G R F S+RSL Sbjct: 248 GLPILGDGLYPTLTPEGQV-DYEHPLQLLARRIEFVDPVSGQARQFESRRSL 298 >ref|YP_004417764.1| pseudouridine synthase [Pusillimonas sp. T7-7] gb|AEC21140.1| pseudouridine synthase [Pusillimonas sp. T7-7] Length = 306 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 153/293 (52%), Positives = 205/293 (69%), Gaps = 2/293 (0%) Query: 7 LPMREGLSPSYLWLQPGPWRDMLSFLAERFTAVPESIWRERLLRGEVRNQHGEALRPESP 66 LP R+G++PS ++L GPW + +L ERF VP + +RL RG++ ++ G A +SP Sbjct: 15 LPARDGVAPSRVYLPQGPWALLRDYLLERFPHVPRDVLLDRLARGDIVDEAGVAQTLDSP 74 Query: 67 YRSGDCIFYYRELPEGEARIPVEEKILHLDDHLLVADKPHFLPVIPTGRFVQETLLVRLK 126 Y+ ++YYRE+P+ E R+P + +L DDHL+VADKPHFL IP GR+++ET LVRL+ Sbjct: 75 YQPLGWLWYYREVPQ-ETRVPYDLPVLFRDDHLVVADKPHFLASIPGGRYLKETALVRLR 133 Query: 127 KATGLQDLVPIHRLDRETAGVIVFSHQPASRGKYQSMFQQRSMFKVYEAIAPLRPDLALP 186 ++ GL +L PIHRLDR+TAGV++F P SRG YQ++FQ R++ K YEAIAPLR DLA P Sbjct: 134 QSLGLPELSPIHRLDRDTAGVLLFCADPESRGVYQALFQTRNVRKEYEAIAPLRSDLAFP 193 Query: 187 RVHRSRVEEIPEQFFKMHEAEGTPNSETHISLLEQRGEFGLYQLEPVTGRRHQLRVHMAS 246 VHRS + P F M E G PNSET I L+E G++G Y+L P TGR+HQLRVHM++ Sbjct: 194 LVHRSSMAARPGH-FTMREVPGEPNSETQIELMEAMGKWGRYRLRPHTGRKHQLRVHMSA 252 Query: 247 LGIPILNDLFYPHAVPVGVADDLDKPLKLLARSLFFIDPLDGSERHFVSQRSL 299 LG+PI +D FYP DD +PL+LLARS+ F+DP+ G R F SQRSL Sbjct: 253 LGMPIRHDDFYPELKAYARDDDFSRPLQLLARSIEFVDPVSGQLRRFESQRSL 305