BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3274.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system ... 504 e-141 ref|ZP_08276092.1| TRAP transporter solute receptor, unknown sub... 496 e-138 ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas... 496 e-138 ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rh... 476 e-132 ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [D... 451 e-125 >ref|YP_003776090.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64182.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 274/288 (95%), Positives = 287/288 (99%) Query: 53 VRMFAQQVNEKTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNI 112 +RMFAQQV+E+TKGALKFEIYPGSSLMKTNAQFSA+RKGALDMSLVPLNYAGGEVPETNI Sbjct: 1 MRMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNI 60 Query: 113 GLMPGLVTSYQQGAAWKNAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAK 172 GLMPGLVTSYQQGAAWKNAEVGKELAR+L EKGV+IVSWIWQAGGVASRGKPIVDP+DAK Sbjct: 61 GLMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAK 120 Query: 173 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKS 232 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAK+ Sbjct: 121 GMKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKA 180 Query: 233 LTTGRDKAYWYMFEPLMMSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVY 292 LTTGRDKAYWYMFEPLM+SKAVFERLPKDQQ+VIM+VGA+MEQFATKAAQADDIAVAQVY Sbjct: 181 LTTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVY 240 Query: 293 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTV 340 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKT+ Sbjct: 241 QKAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 288 >ref|ZP_08276092.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30439.1| TRAP transporter solute receptor, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 339 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 258/340 (75%), Positives = 297/340 (87%), Gaps = 1/340 (0%) Query: 1 MTAFTRRHFLGTLAAAPLAAAMPAAWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQV 60 M + TRR LG +AA+PL + +PAAWAQT +LKISHQFPGGT TEGDFRDRL R FA +V Sbjct: 1 MFSTTRRTLLGAIAASPLFS-IPAAWAQTTALKISHQFPGGTATEGDFRDRLCRQFATEV 59 Query: 61 NEKTKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVT 120 +++KG+LKFE+YPGSSLMKTNAQFS++RKGALDMSLVPL+YAGGE+PE NIGLMPGLVT Sbjct: 60 EKRSKGSLKFEVYPGSSLMKTNAQFSSMRKGALDMSLVPLSYAGGEMPEVNIGLMPGLVT 119 Query: 121 SYQQGAAWKNAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAKGMKVRGGS 180 SY+QG WKNAEVG+EL R+L EKG+V+VSWIWQAGGVASR PIV+P DAKG+K+RGGS Sbjct: 120 SYEQGYGWKNAEVGRELNRLLLEKGIVVVSWIWQAGGVASRTIPIVEPEDAKGLKIRGGS 179 Query: 181 REMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKA 240 REMDLILK AGAAVV+LPSNEIYAAMQTGAMDAA+TSSTS +SFRLEEV+KSLTTGR KA Sbjct: 180 REMDLILKAAGAAVVSLPSNEIYAAMQTGAMDAALTSSTSLISFRLEEVSKSLTTGRGKA 239 Query: 241 YWYMFEPLMMSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKVV 300 YW+MFEPLMMSK VF++L KDQQA+IM+VG ++E A K+AQ DD VA VYQK GAKVV Sbjct: 240 YWFMFEPLMMSKVVFDKLSKDQQAIIMAVGGELETMARKSAQTDDSLVAAVYQKTGAKVV 299 Query: 301 DLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTV 340 DL+ VKKWQ IAR TAWKD+A RNANCA LL LAEKT+ Sbjct: 300 DLSEATVKKWQTIARATAWKDYAERNANCANLLKLAEKTL 339 >ref|YP_004752360.1| TRAP transporter solute receptor [Collimonas fungivorans Ter331] gb|AEK61537.1| TRAP transporter solute receptor, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 329 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 259/320 (80%), Positives = 289/320 (90%), Gaps = 3/320 (0%) Query: 10 LGTLAAAPLAAAMPAAWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVNEKTKGALK 69 LG LA+ P + M + WAQ+ +LKISHQFPGGT++EGDFRDRL RMFA +V +++ LK Sbjct: 2 LGALASTPFWS-MSSVWAQSGALKISHQFPGGTISEGDFRDRLTRMFAAEVGKRS--GLK 58 Query: 70 FEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQGAAWK 129 FEIYPGSSLMKTN+QFSALRKGALD SLVPLNYAGGEVPE NIGLMPGLVTSY+QGAAWK Sbjct: 59 FEIYPGSSLMKTNSQFSALRKGALDFSLVPLNYAGGEVPEVNIGLMPGLVTSYEQGAAWK 118 Query: 130 NAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAKGMKVRGGSREMDLILKE 189 N+EVGKEL+RIL EKGV+IVSWIWQAGGVASRGKPI+DP+DAKG+KVRGGSREMDLILKE Sbjct: 119 NSEVGKELSRILLEKGVIIVSWIWQAGGVASRGKPIIDPSDAKGLKVRGGSREMDLILKE 178 Query: 190 AGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKAYWYMFEPLM 249 AGAAVVTLPSNEIYAAMQTGAMDAAMTSSTS +SFRLEEV+KSLT+GRDKAYWYM EPLM Sbjct: 179 AGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSLISFRLEEVSKSLTSGRDKAYWYMLEPLM 238 Query: 250 MSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKVVDLNAEVVKK 309 +SKA F+RL K+QQ +M+VGA+MEQFAT AA+ DD VA VYQKAGAKVVDLNA VKK Sbjct: 239 ISKATFDRLTKEQQVAVMAVGAEMEQFATNAARLDDSGVAAVYQKAGAKVVDLNAATVKK 298 Query: 310 WQDIARNTAWKDFAARNANC 329 WQDIARNTAWKD+AARN NC Sbjct: 299 WQDIARNTAWKDYAARNDNC 318 >ref|YP_523097.1| TRAP dicarboxylate transporter subunit DctP [Rhodoferax ferrireducens T118] gb|ABD69566.1| TRAP dicarboxylate transporter- DctP subunit [Rhodoferax ferrireducens T118] Length = 338 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 244/331 (73%), Positives = 296/331 (89%), Gaps = 2/331 (0%) Query: 10 LGTLAAAPLAAAMPAAWAQTASLKISHQFPGGTLTEGDFRDRLVRMFAQQVNEKTKGALK 69 +G LAA+ + ++ A+AQT++LKISHQFPGGT+ EGDFRDRLVR FA +V +++KGA+K Sbjct: 10 MGGLAASTMPFSL--AFAQTSALKISHQFPGGTIKEGDFRDRLVRNFAAEVEKRSKGAMK 67 Query: 70 FEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQQGAAWK 129 FEIYPGSSLMKTNAQFS++RKGALDM+L+PL+YAGGEVPE NIGLMPGLV SY+Q +WK Sbjct: 68 FEIYPGSSLMKTNAQFSSMRKGALDMALIPLSYAGGEVPELNIGLMPGLVVSYEQAYSWK 127 Query: 130 NAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAKGMKVRGGSREMDLILKE 189 VG EL R+L EKG+V++SWIWQAGGVASRGKP+V+P DAKGMK+RGGSREMD+ILK+ Sbjct: 128 TKPVGIELTRVLQEKGIVLISWIWQAGGVASRGKPVVEPEDAKGMKIRGGSREMDMILKD 187 Query: 190 AGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKAYWYMFEPLM 249 AGAAVV+LPSNEIYAAMQTGAMDAAMTSSTSF+SFRLEEVAK+LTTGR AYW+MFEPLM Sbjct: 188 AGAAVVSLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRTGAYWFMFEPLM 247 Query: 250 MSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKVVDLNAEVVKK 309 MSKA+F++LPKDQ+ ++M+VGA+ME+FA +AA+ DDI VA VYQKAGAKVVDL+ +KK Sbjct: 248 MSKAIFDKLPKDQRDMLMTVGAEMEKFALEAAKKDDIDVAAVYQKAGAKVVDLSDGTIKK 307 Query: 310 WQDIARNTAWKDFAARNANCAKLLALAEKTV 340 WQDIAR TAWKD+ A+N CAKLLALA++T+ Sbjct: 308 WQDIARKTAWKDYGAKNEGCAKLLALAQQTL 338 >ref|YP_287220.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] gb|AAZ48750.1| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica RCB] Length = 341 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 237/337 (70%), Positives = 283/337 (83%), Gaps = 2/337 (0%) Query: 6 RRHFLGTLAAAPLAAAMP-AAWAQTA-SLKISHQFPGGTLTEGDFRDRLVRMFAQQVNEK 63 RR+ L + A P A P WAQ A LKISHQFPGGT TEGDFRDRL R F+ ++ ++ Sbjct: 5 RRNILKGMVATPALALSPNLLWAQAAGELKISHQFPGGTATEGDFRDRLCRRFSAEITKR 64 Query: 64 TKGALKFEIYPGSSLMKTNAQFSALRKGALDMSLVPLNYAGGEVPETNIGLMPGLVTSYQ 123 T GAL+ +YPGSSLMKTNAQFS++RKGALDM+LVPL+YAGGEVPETNIGLMPG+VTSY+ Sbjct: 65 TNGALRGTVYPGSSLMKTNAQFSSVRKGALDMTLVPLSYAGGEVPETNIGLMPGIVTSYE 124 Query: 124 QGAAWKNAEVGKELARILGEKGVVIVSWIWQAGGVASRGKPIVDPADAKGMKVRGGSREM 183 Q +WK AE+GK LA IL +KGV++VSWIWQAGGVASR KPI+DP DAKG+KVRGGSREM Sbjct: 125 QAVSWKKAEIGKALANILADKGVLVVSWIWQAGGVASRVKPIIDPEDAKGLKVRGGSREM 184 Query: 184 DLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKSLTTGRDKAYWY 243 D++LK+AGA V+TLPSNEIYAAMQTGA+DAAMTSSTS +SFRLEEV K+LTTGR K YW+ Sbjct: 185 DMVLKQAGATVLTLPSNEIYAAMQTGALDAAMTSSTSLISFRLEEVGKALTTGRGKTYWF 244 Query: 244 MFEPLMMSKAVFERLPKDQQAVIMSVGADMEQFATKAAQADDIAVAQVYQKAGAKVVDLN 303 MFEPL++S+AVFE+LPK QQ IM+VGA+ME +A + A+ADD AVA VYQKAG K DL+ Sbjct: 245 MFEPLLISRAVFEKLPKAQQDAIMAVGAEMEAYALEGARADDQAVAAVYQKAGGKAYDLS 304 Query: 304 AEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTV 340 VKKWQ IAR+TAWKDFAA+N +CA++L LAE T+ Sbjct: 305 DASVKKWQAIARDTAWKDFAAKNESCARILKLAEATL 341