BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3273.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system ... 269 2e-70 ref|YP_004752361.1| Tripartite ATP-independent periplasmic trans... 252 2e-65 ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit,... 232 2e-59 ref|YP_523098.1| tripartite ATP-independent periplasmic transpor... 187 8e-46 ref|YP_287219.1| tripartite ATP-independent periplasmic transpor... 182 2e-44 >ref|YP_003776089.1| TRAP-type C4-dicarboxylate transport system small permease [Herbaspirillum seropedicae SmR1] gb|ADJ64181.1| TRAP-type C4-dicarboxylate transport system, small permease component protein [Herbaspirillum seropedicae SmR1] Length = 192 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 156/192 (81%), Positives = 169/192 (88%), Gaps = 2/192 (1%) Query: 1 MSHGFEMQPQA--KPTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARY 58 MSHGFEM A +P PA+A VA L L ++++AVFL M+AL++TS ILTYSVV RY Sbjct: 1 MSHGFEMPGAAATRPEVPASAPVAWLGAFLRGYHRVAVFLGMIALLVTSCILTYSVVVRY 60 Query: 59 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGLLSPLANKVRMFIVDAVS 118 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAG+LSPLAN+VRMFIVD VS Sbjct: 61 FFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGMLSPLANRVRMFIVDVVS 120 Query: 119 FLFCAFFTWKSWTLFHEAWVEGQTTSSTFAPPLWIPYSLMALGMSMLTLQLLVQVLTRIT 178 LFCAFFTWKSW LFHEAWVEGQTTSSTFAPPLWIPYSLMALGM+MLTLQLLVQVL RIT Sbjct: 121 LLFCAFFTWKSWALFHEAWVEGQTTSSTFAPPLWIPYSLMALGMTMLTLQLLVQVLVRIT 180 Query: 179 GTVPAAPSGGTQ 190 GTVPA P+GG Q Sbjct: 181 GTVPATPAGGAQ 192 >ref|YP_004752361.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] gb|AEK61538.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Collimonas fungivorans Ter331] Length = 197 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 132/181 (72%), Positives = 152/181 (83%), Gaps = 3/181 (1%) Query: 1 MSHGFEMQPQAKPTAPA---NAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVAR 57 MSHGF+ +P A P PA N VVA L LE+F+KLA++L+M ALMLTS+I+TYSVVAR Sbjct: 1 MSHGFDPKPNAGPALPAMPDNPVVAVLAGILERFHKLALYLSMTALMLTSLIMTYSVVAR 60 Query: 58 YFFHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGLLSPLANKVRMFIVDAV 117 YFFH PTDWQD+A+VFMLVGVIFLC+ Y QSLRGHIGIEAL+ +L N VR+ +VD V Sbjct: 61 YFFHVPTDWQDDATVFMLVGVIFLCAGYAQSLRGHIGIEALSSVLPAGVNAVRLLLVDLV 120 Query: 118 SFLFCAFFTWKSWTLFHEAWVEGQTTSSTFAPPLWIPYSLMALGMSMLTLQLLVQVLTRI 177 SFLFC FF+WKSWTLFHEAW EGQTTSSTFAPPLWIPYSLMALGM++LTLQLL QVL R+ Sbjct: 121 SFLFCGFFSWKSWTLFHEAWSEGQTTSSTFAPPLWIPYSLMALGMTVLTLQLLAQVLARL 180 Query: 178 T 178 T Sbjct: 181 T 181 >ref|ZP_08276093.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30440.1| TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 187 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 119/178 (66%), Positives = 141/178 (79%) Query: 1 MSHGFEMQPQAKPTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYFF 60 MSHGFE++P P P N VVA L AL+ FN+ + L+M AL+LT+++LTYSVV+RYFF Sbjct: 1 MSHGFELEPVKGPAVPDNPVVAKLAKALDAFNQGLLMLSMGALILTALVLTYSVVSRYFF 60 Query: 61 HQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGLLSPLANKVRMFIVDAVSFL 120 PTDWQDEASVFMLVGV F C AYVQ+LRGHIGIEALA +L P N RM VD +S L Sbjct: 61 KLPTDWQDEASVFMLVGVTFFCCAYVQALRGHIGIEALASILPPRVNAARMMFVDVMSLL 120 Query: 121 FCAFFTWKSWTLFHEAWVEGQTTSSTFAPPLWIPYSLMALGMSMLTLQLLVQVLTRIT 178 FC FF+WKSW LFHEA+VEG TTSSTFAPPLWIPY +MA GMS+L+LQ+ +QVL R+T Sbjct: 121 FCLFFSWKSWALFHEAFVEGFTTSSTFAPPLWIPYGMMAFGMSLLSLQIAMQVLIRVT 178 >ref|YP_523098.1| tripartite ATP-independent periplasmic transporter DctQ [Rhodoferax ferrireducens T118] gb|ABD69567.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Rhodoferax ferrireducens T118] Length = 165 Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 97/139 (69%), Positives = 111/139 (79%) Query: 24 LHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYFFHQPTDWQDEASVFMLVGVIFLCS 83 L +L N + L+M AL+LTS +LTYSV RYFF TDWQDEASVFMLVG IF+C+ Sbjct: 2 LARSLNWINLQVLRLSMAALVLTSAVLTYSVATRYFFKTATDWQDEASVFMLVGAIFMCT 61 Query: 84 AYVQSLRGHIGIEALAGLLSPLANKVRMFIVDAVSFLFCAFFTWKSWTLFHEAWVEGQTT 143 AYVQS+RGH+GIEALA LL N+VR +VD VS LFC+FF WKSWTLFHEAW EGQTT Sbjct: 62 AYVQSMRGHVGIEALATLLPASVNRVRATVVDIVSTLFCSFFAWKSWTLFHEAWAEGQTT 121 Query: 144 SSTFAPPLWIPYSLMALGM 162 SS+FAPPLWIPYSLMA+GM Sbjct: 122 SSSFAPPLWIPYSLMAVGM 140 >ref|YP_287219.1| tripartite ATP-independent periplasmic transporter DctQ [Dechloromonas aromatica RCB] gb|AAZ48749.1| Tripartite ATP-independent periplasmic transporter, DctQ component [Dechloromonas aromatica RCB] Length = 183 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 92/163 (56%), Positives = 115/163 (70%), Gaps = 1/163 (0%) Query: 1 MSHGFEMQPQAK-PTAPANAVVAGLHHALEKFNKLAVFLAMVALMLTSIILTYSVVARYF 59 MSHGFE++ K P P ++ G++ + + +FL+ AL+ ++IL SV RYF Sbjct: 1 MSHGFEIEGAVKAPEIPETGILGGINRVMTGLHTAIMFLSSGALLGAALILCSSVFLRYF 60 Query: 60 FHQPTDWQDEASVFMLVGVIFLCSAYVQSLRGHIGIEALAGLLSPLANKVRMFIVDAVSF 119 PTDWQDE SVF+LVG F+C+ YVQS RGHIGIEAL GLL PLAN++R+ D VS Sbjct: 61 LKIPTDWQDEMSVFLLVGATFMCAGYVQSQRGHIGIEALGGLLPPLANRLRLLFCDLVSL 120 Query: 120 LFCAFFTWKSWTLFHEAWVEGQTTSSTFAPPLWIPYSLMALGM 162 LFCAFF+WKS LFHEAWV+GQTTSS++APPL IPY M GM Sbjct: 121 LFCAFFSWKSILLFHEAWVDGQTTSSSWAPPLAIPYGFMTAGM 163