BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3272.p (449 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system ... 697 0.0 ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit... 677 0.0 ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit,... 634 e-180 ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rh... 613 e-173 ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [D... 574 e-161 >ref|YP_003776088.1| TRAP-type C4-dicarboxylate transport system large permease [Herbaspirillum seropedicae SmR1] gb|ADJ64180.1| TRAP-type C4-dicarboxylate transport system, large permease component protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 697 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 436/449 (97%), Positives = 446/449 (99%) Query: 1 MSPLTLGVLYGVVTILVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MSPLTLGVLYGVVTI+VMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT Sbjct: 1 MSPLTLGVLYGVVTIVVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLN+VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVILFAGYAVFRARKEYKLAHAVYTAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLV+LFAGYAV+RARKEY+LAHAVY+AGGAKSAYLDDEHFTLAQKVEMLPRVLPFL Sbjct: 181 GPGVLLVLLFAGYAVYRARKEYRLAHAVYSAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPKEIAPFLSSTIKESGMLLL 300 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKP+EIAPFLSSTIKESGMLLL Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPREIAPFLSSTIKESGMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF Sbjct: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 Query: 421 LALMFLAVILLCFFPGIATGLPDIIMGVK 449 LALMFLAV+LLC FPGIAT LPD++MG K Sbjct: 421 LALMFLAVLLLCMFPGIATLLPDLLMGAK 449 >ref|YP_004752362.1| TRAP dicarboxylate transporter, DctM subunit [Collimonas fungivorans Ter331] gb|AEK61539.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Collimonas fungivorans Ter331] Length = 449 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 400/449 (89%), Positives = 429/449 (95%) Query: 1 MSPLTLGVLYGVVTILVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MSPL LG LYG+VTI+VMCSGMPIAFALGVVAT FMYFFMP SSLDTITQNVYEEIAS+T Sbjct: 1 MSPLALGALYGIVTIIVMCSGMPIAFALGVVATSFMYFFMPASSLDTITQNVYEEIASVT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+SPAG+DLYSAIHAWL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSPAGRDLYSAIHAWLSKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVA+EQSLGRLFLAG+ Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVASEQSLGRLFLAGV 180 Query: 181 GPGVLLVILFAGYAVFRARKEYKLAHAVYTAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLVILFAGYAV+RARKEY+LAH +Y+ GG KSAYLDDEHFT AQKVEMLPRVLPFL Sbjct: 181 GPGVLLVILFAGYAVYRARKEYRLAHEIYSQGGIKSAYLDDEHFTFAQKVEMLPRVLPFL 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPKEIAPFLSSTIKESGMLLL 300 ILLIGVM+ALYGG ATPSETAGLGALLA+VLIAVVYR+++P+++ PFL+STIKES MLLL Sbjct: 241 ILLIGVMIALYGGFATPSETAGLGALLAIVLIAVVYRMWRPRDLMPFLNSTIKESCMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVV LHLSKWLLLAVIL MVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVALHLSKWLLLAVILLMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPL+ AGFDLIWFG+VMTVVMEMGLIHPPVGLNLFVIKNIAPDI L DVIKGT+PF Sbjct: 361 PIILPPLREAGFDLIWFGVVMTVVMEMGLIHPPVGLNLFVIKNIAPDIPLSDVIKGTLPF 420 Query: 421 LALMFLAVILLCFFPGIATGLPDIIMGVK 449 L LMFLA+ILLC FPGI TGLPD++MG + Sbjct: 421 LLLMFLAIILLCLFPGIVTGLPDLLMGAR 449 >ref|ZP_08276094.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30441.1| TRAP dicarboxylate transporter, DctM subunit, unknown substrate 4 [Oxalobacteraceae bacterium IMCC9480] Length = 449 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 384/449 (85%), Positives = 417/449 (92%) Query: 1 MSPLTLGVLYGVVTILVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS LTLG++YGV T++VM SGMPIAFALGVVA FMYFFMP SSLDT+TQNVYEE+ASIT Sbjct: 1 MSELTLGLMYGVATLVVMFSGMPIAFALGVVAVSFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIGKSPAGKDLYSAIH WL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHTWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVILFAGYAVFRARKEYKLAHAVYTAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPGVLLV LF+GYAV+RARKEY+LAHA + G SAYL+ EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGVLLVGLFSGYAVYRARKEYRLAHAAFLNNGTASAYLEVEHFTLAQKVEMLPRVLPFI 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPKEIAPFLSSTIKESGMLLL 300 +LL+GVMVALYGG ATPSETAGLGA+LALVLIA+VY I+KP+++AP LSSTIKES MLLL Sbjct: 241 VLLLGVMVALYGGYATPSETAGLGAMLALVLIAIVYGIWKPRDLAPILSSTIKESSMLLL 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAAQWVV + LSKW+LL VIL MV+V GFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAQWVVAMELSKWVLLTVILLMVVVFGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKNIAPDI L DVI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNIAPDIPLKDVIVGVMPF 420 Query: 421 LALMFLAVILLCFFPGIATGLPDIIMGVK 449 + LMF+AVILLC FP IATGLP ++MGVK Sbjct: 421 VGLMFVAVILLCVFPEIATGLPAMLMGVK 449 >ref|YP_523099.1| TRAP dicarboxylate transporter subunit DctM [Rhodoferax ferrireducens T118] gb|ABD69568.1| TRAP dicarboxylate transporter- DctM subunit [Rhodoferax ferrireducens T118] Length = 449 Score = 613 bits (1580), Expect = e-173, Method: Composition-based stats. Identities = 375/449 (83%), Positives = 412/449 (91%) Query: 1 MSPLTLGVLYGVVTILVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 MS L++G+ YG VT+LVM SGMPIAFALG VA FMYFFMP SSLDT+TQNVYEE+ASIT Sbjct: 1 MSELSIGLSYGAVTLLVMFSGMPIAFALGTVAVTFMYFFMPASSLDTVTQNVYEEMASIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFI+KGAAIGKSPAG+DLYSAIHAWL++VPGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFIMKGAAIGKSPAGQDLYSAIHAWLHKVPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIGSAGIPEMR+RGYSPGFAAGIIAAGGTLGILLPPSI MILYAVAAEQSLGRLFLAGI Sbjct: 121 SAIGSAGIPEMRKRGYSPGFAAGIIAAGGTLGILLPPSIVMILYAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVILFAGYAVFRARKEYKLAHAVYTAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 GPG+LLV LFAGYAV RAR+EYK A +Y GG KSAYL +EHFTLAQKVEMLPRVLPF+ Sbjct: 181 GPGLLLVALFAGYAVVRARQEYKQALVIYQQGGPKSAYLIEEHFTLAQKVEMLPRVLPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPKEIAPFLSSTIKESGMLLL 300 ILLIGVMVALYGGLATPSETAGLG L+AL LIAVVY I++PK++AP L+ST+KES ML+L Sbjct: 241 ILLIGVMVALYGGLATPSETAGLGGLMALGLIAVVYGIWRPKDVAPILTSTLKESTMLML 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMS+LHISQ AAQW+V + LSKW+LL VIL MVIVLGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSHLHISQGAAQWIVAMQLSKWVLLGVILLMVIVLGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFG+VMT+VMEMGLIHPPVGLN+FVIKN+APDI L DVI G +PF Sbjct: 361 PIILPPLKAAGFDLIWFGVVMTIVMEMGLIHPPVGLNIFVIKNVAPDIPLKDVIWGVMPF 420 Query: 421 LALMFLAVILLCFFPGIATGLPDIIMGVK 449 + LMF AV LLC FPGI TGLP+++MGVK Sbjct: 421 VGLMFGAVFLLCLFPGIVTGLPNLVMGVK 449 >ref|YP_287218.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] gb|AAZ48748.1| TRAP dicarboxylate transporter, DctM subunit [Dechloromonas aromatica RCB] Length = 450 Score = 574 bits (1479), Expect = e-161, Method: Composition-based stats. Identities = 343/448 (76%), Positives = 393/448 (87%) Query: 1 MSPLTLGVLYGVVTILVMCSGMPIAFALGVVATGFMYFFMPESSLDTITQNVYEEIASIT 60 M+ ++G+LYG+ T+ VM SG+PIAFALG +A FM FMP ++ DTITQNV+EE+A+IT Sbjct: 1 MAESSIGILYGLGTLAVMFSGIPIAFALGSIAVLFMLLFMPAAATDTITQNVFEEMANIT 60 Query: 61 LLSIPLFILKGAAIGKSPAGKDLYSAIHAWLNRVPGGLGIANVFACALFAAMAGSSPATC 120 LLSIPLFILKGAAIG+S AG DLY AIHAW++++PGGLGIANVFACALFAAMAGSSPATC Sbjct: 61 LLSIPLFILKGAAIGRSRAGADLYLAIHAWMHKIPGGLGIANVFACALFAAMAGSSPATC 120 Query: 121 SAIGSAGIPEMRRRGYSPGFAAGIIAAGGTLGILLPPSITMILYAVAAEQSLGRLFLAGI 180 SAIG AGIPEMR RGYSPGFAAGIIAAGGTLGILLPPSITMIL+AVAAEQSLGRLFLAGI Sbjct: 121 SAIGGAGIPEMRARGYSPGFAAGIIAAGGTLGILLPPSITMILFAVAAEQSLGRLFLAGI 180 Query: 181 GPGVLLVILFAGYAVFRARKEYKLAHAVYTAGGAKSAYLDDEHFTLAQKVEMLPRVLPFL 240 PG+LLV LFAGYAVFR + EY A V+ +GGAKSAYLD+ T A K MLPRV+PF+ Sbjct: 181 FPGLLLVFLFAGYAVFRFKVEYNSALDVWHSGGAKSAYLDEMRMTRADKTRMLPRVIPFV 240 Query: 241 ILLIGVMVALYGGLATPSETAGLGALLALVLIAVVYRIYKPKEIAPFLSSTIKESGMLLL 300 +LLIGVM+ALYGG ATPSETAGLG +LAL LIA +Y +++P ++ P L+ST+KES ML+ Sbjct: 241 LLLIGVMLALYGGYATPSETAGLGGILALALIAGIYGVWRPSQLKPILNSTLKESTMLMF 300 Query: 301 IIGMSLLYSYVMSYLHISQSAAQWVVDLHLSKWLLLAVILGMVIVLGFFLPPVSIILMTA 360 IIGMSLLYSYVMSYLHISQSAA+W+V +HLSKWLLLA IL V++LGFFLPPVSIILMTA Sbjct: 301 IIGMSLLYSYVMSYLHISQSAAEWIVAMHLSKWLLLAAILIFVVILGFFLPPVSIILMTA 360 Query: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNLFVIKNIAPDIALGDVIKGTIPF 420 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLN+FVIKN+APDI L D++ G PF Sbjct: 361 PIILPPLKAAGFDLIWFGIVMTVVMEMGLIHPPVGLNIFVIKNVAPDIPLKDIVWGVFPF 420 Query: 421 LALMFLAVILLCFFPGIATGLPDIIMGV 448 + LMFLAVILLC FPGIAT LPD++MGV Sbjct: 421 VGLMFLAVILLCIFPGIATWLPDVVMGV 448