BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3271.p (472 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776087.1| malonate decarboxylase alpha subunit [Herbas... 952 0.0 ref|YP_004752363.1| malonate decarboxylase subunit alpha [Collim... 872 0.0 ref|YP_001354253.1| malonate decarboxylase alpha subunit [Janthi... 865 0.0 ref|YP_001099767.1| malonate decarboxylase subunit alpha [Hermin... 850 0.0 ref|YP_523100.1| alpha subunit of malonate decarboxylase [Rhodof... 824 0.0 >ref|YP_003776087.1| malonate decarboxylase alpha subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64179.1| malonate decarboxylase alpha subunit protein [Herbaspirillum seropedicae SmR1] Length = 555 Score = 952 bits (2460), Expect = 0.0, Method: Composition-based stats. Identities = 467/472 (98%), Positives = 471/472 (99%) Query: 1 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 60 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF Sbjct: 84 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 143 Query: 61 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 120 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI Sbjct: 144 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 203 Query: 121 PADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 180 PADWV FAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT Sbjct: 204 PADWVGFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 263 Query: 181 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 240 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR Sbjct: 264 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 323 Query: 241 PDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 300 PD+FFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM Sbjct: 324 PDIFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 383 Query: 301 GADARGRRHASEAWLKAGQQARAGRNTIPRGQKLVVQTVETFREHMQPAFVEKLDAWQLG 360 GADARGRRHASEAWLKAGQQARAGR+TIPRGQKLVVQTVETFREHMQPAFVE+LDAWQLG Sbjct: 384 GADARGRRHASEAWLKAGQQARAGRHTIPRGQKLVVQTVETFREHMQPAFVERLDAWQLG 443 Query: 361 EQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRDKRMV 420 EQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRD+RMV Sbjct: 444 EQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRDRRMV 503 Query: 421 ENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 472 ENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW Sbjct: 504 ENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 555 >ref|YP_004752363.1| malonate decarboxylase subunit alpha [Collimonas fungivorans Ter331] gb|AEK61540.1| Malonate decarboxylase alpha subunit [Collimonas fungivorans Ter331] Length = 553 Score = 872 bits (2254), Expect = 0.0, Method: Composition-based stats. Identities = 421/472 (89%), Positives = 447/472 (94%) Query: 1 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 60 ML SVLALPEHLDVFE G+A+RLDFSFSGPQ+ RLA+L +AGKLNIGAIHTYLELFGRYF Sbjct: 82 MLLSVLALPEHLDVFENGVAERLDFSFSGPQSVRLARLVAAGKLNIGAIHTYLELFGRYF 141 Query: 61 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 120 VDLTPRVALVAAQAADR GNLYTGPNTEDTPAI EATAFS GIVIAQVNEIVD LPRVDI Sbjct: 142 VDLTPRVALVAAQAADRQGNLYTGPNTEDTPAIVEATAFSGGIVIAQVNEIVDVLPRVDI 201 Query: 121 PADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 180 PADWVSF ++APTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEY VQRLNHGIGFDT Sbjct: 202 PADWVSFVVQAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYEVQRLNHGIGFDT 261 Query: 181 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 240 AAIELILPTYA SLGL+GKIC+HWALNPHPALIPAIEAGFVES+HSFGSELGMEDYIRAR Sbjct: 262 AAIELILPTYAASLGLKGKICQHWALNPHPALIPAIEAGFVESIHSFGSELGMEDYIRAR 321 Query: 241 PDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 300 DVFFVG DGSMRSNRAFSQ AGHY CDMFIGSTLQIDLQGNSSTAT GRIAGFGGAPNM Sbjct: 322 SDVFFVGGDGSMRSNRAFSQVAGHYACDMFIGSTLQIDLQGNSSTATTGRIAGFGGAPNM 381 Query: 301 GADARGRRHASEAWLKAGQQARAGRNTIPRGQKLVVQTVETFREHMQPAFVEKLDAWQLG 360 GADARGRRHAS AWLKAG+QAR G+N IPRGQKLVVQ VETFREHMQPAFVE+LDAW+L Sbjct: 382 GADARGRRHASPAWLKAGRQARDGKNLIPRGQKLVVQIVETFREHMQPAFVERLDAWELA 441 Query: 361 EQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRDKRMV 420 EQA M IPPVMIYG+DV+HILTEEG+ANLLLCRT+EEREQA+RGVAGYT +G+GRDKRMV Sbjct: 442 EQADMAIPPVMIYGEDVSHILTEEGLANLLLCRTDEEREQAVRGVAGYTPIGLGRDKRMV 501 Query: 421 ENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 472 ENLRDRGII+R EDLGID+R+ATRDLLAAK+MKDLVRASGGLY+PPKRFRNW Sbjct: 502 ENLRDRGIIQRPEDLGIDQRLATRDLLAAKSMKDLVRASGGLYDPPKRFRNW 553 >ref|YP_001354253.1| malonate decarboxylase alpha subunit [Janthinobacterium sp. Marseille] gb|ABR89259.1| malonate decarboxylase alpha subunit [Janthinobacterium sp. Marseille] Length = 555 Score = 865 bits (2234), Expect = 0.0, Method: Composition-based stats. Identities = 417/472 (88%), Positives = 443/472 (93%) Query: 1 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 60 ML SVLALPEHLD+FEKGIA +LDFSFSGPQ +LA+L +AGK+NIGAIHTYLELFGRYF Sbjct: 84 MLQSVLALPEHLDLFEKGIASKLDFSFSGPQGAQLARLVAAGKINIGAIHTYLELFGRYF 143 Query: 61 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 120 +DLTPRVAL+AAQAADRHGNLYTGPNTEDTPAI EATAF +GIVIAQVNEIVD LPRVD+ Sbjct: 144 IDLTPRVALIAAQAADRHGNLYTGPNTEDTPAIVEATAFKNGIVIAQVNEIVDVLPRVDV 203 Query: 121 PADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 180 PADWV F ++APTPHYIEPLFTRDPA ISE+QVLMAMMAIKGIYAEYGV+R+NHGIGFDT Sbjct: 204 PADWVDFVVQAPTPHYIEPLFTRDPALISEVQVLMAMMAIKGIYAEYGVERINHGIGFDT 263 Query: 181 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 240 AAIELILPTYAESLGLRGKI +HWALNPHPALIPAIEAGFVESVHSFGSELGME YI +R Sbjct: 264 AAIELILPTYAESLGLRGKIGRHWALNPHPALIPAIEAGFVESVHSFGSELGMERYIESR 323 Query: 241 PDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 300 PDVFFVG DGSMRSNRA Q AGHY CDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM Sbjct: 324 PDVFFVGRDGSMRSNRAMCQVAGHYACDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 383 Query: 301 GADARGRRHASEAWLKAGQQARAGRNTIPRGQKLVVQTVETFREHMQPAFVEKLDAWQLG 360 G+DARGRRH+S AWLKAGQQA+ G+ IPRGQKLVVQ VETFREHMQPAFVE+LDAWQL Sbjct: 384 GSDARGRRHSSPAWLKAGQQAQQGKKKIPRGQKLVVQMVETFREHMQPAFVEELDAWQLA 443 Query: 361 EQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRDKRMV 420 EQAK+ IPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGM RD++MV Sbjct: 444 EQAKLDIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMARDRKMV 503 Query: 421 ENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 472 ENLRDRGII RAED+GIDKRMATRDLLAAKNMKDLVRASGGLY PPKRFRNW Sbjct: 504 ENLRDRGIILRAEDMGIDKRMATRDLLAAKNMKDLVRASGGLYAPPKRFRNW 555 >ref|YP_001099767.1| malonate decarboxylase subunit alpha [Herminiimonas arsenicoxydans] emb|CAL61640.1| malonate decarboxylase, alpha subunit [Herminiimonas arsenicoxydans] Length = 550 Score = 850 bits (2197), Expect = 0.0, Method: Composition-based stats. Identities = 414/476 (86%), Positives = 439/476 (92%), Gaps = 4/476 (0%) Query: 1 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 60 ML SVLALPEHLD+F+KGIA RLDFSFSGPQA RLA+L + GK+NIGAIHTYLELFGRYF Sbjct: 75 MLLSVLALPEHLDIFDKGIASRLDFSFSGPQAVRLARLVATGKINIGAIHTYLELFGRYF 134 Query: 61 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 120 +DLTPRVALVAAQAADR GNLYTGPNTEDTPAI EATAF +GIVIAQVNEIVD LPRVDI Sbjct: 135 IDLTPRVALVAAQAADRQGNLYTGPNTEDTPAIVEATAFKNGIVIAQVNEIVDVLPRVDI 194 Query: 121 PADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 180 PADWV F + APTPHYIEPLFTRDPA ISE+QVLMAMMAIKGIYAEYGV+R+NHGIGFDT Sbjct: 195 PADWVDFVVPAPTPHYIEPLFTRDPALISEVQVLMAMMAIKGIYAEYGVERINHGIGFDT 254 Query: 181 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 240 AAIELILPTYAESLGL+GKI +HWALNPHPALIPAIEAGFVESVHSFGSELGME YI AR Sbjct: 255 AAIELILPTYAESLGLKGKIGRHWALNPHPALIPAIEAGFVESVHSFGSELGMERYIEAR 314 Query: 241 PDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 300 PDVFFVG DGSMRSNRA SQ AGHY CDMFIGSTLQID+QGNSSTATLGRI+GFGGAPNM Sbjct: 315 PDVFFVGRDGSMRSNRAMSQVAGHYACDMFIGSTLQIDMQGNSSTATLGRISGFGGAPNM 374 Query: 301 GADARGRRHASEAWLKAGQQARAG----RNTIPRGQKLVVQTVETFREHMQPAFVEKLDA 356 G+DARGRRH S AWLKAG+QAR + +PRGQKLVVQ VETFREHMQPAFVE+LDA Sbjct: 375 GSDARGRRHPSAAWLKAGEQARQQTSQEKKKMPRGQKLVVQIVETFREHMQPAFVEELDA 434 Query: 357 WQLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRD 416 W++ EQAK+ IPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYT VGM RD Sbjct: 435 WKVAEQAKLAIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTPVGMARD 494 Query: 417 KRMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 472 K+MVENLRDRGII RAED+GIDKRMATRDLLAAKNMKDLVRASGGLY PPKRFRNW Sbjct: 495 KKMVENLRDRGIILRAEDMGIDKRMATRDLLAAKNMKDLVRASGGLYAPPKRFRNW 550 >ref|YP_523100.1| alpha subunit of malonate decarboxylase [Rhodoferax ferrireducens T118] gb|ABD69569.1| alpha subunit of malonate decarboxylase [Rhodoferax ferrireducens T118] Length = 558 Score = 824 bits (2128), Expect = 0.0, Method: Composition-based stats. Identities = 402/475 (84%), Positives = 430/475 (90%), Gaps = 3/475 (0%) Query: 1 MLFSVLALPEHLDVFEKGIADRLDFSFSGPQAGRLAKLASAGKLNIGAIHTYLELFGRYF 60 M+ SVLALPEHLDVFE GIA +LDFSFSGPQ+ RLAKL S G++ IGAIHTYLELF RYF Sbjct: 84 MVQSVLALPEHLDVFESGIASKLDFSFSGPQSARLAKLVSGGQIQIGAIHTYLELFSRYF 143 Query: 61 VDLTPRVALVAAQAADRHGNLYTGPNTEDTPAIAEATAFSSGIVIAQVNEIVDELPRVDI 120 VDLTPRV+LV AQAAD HGNL+TGPNTEDTPAI EATAF SGIVIAQVNE+V+ + RVDI Sbjct: 144 VDLTPRVSLVCAQAADAHGNLFTGPNTEDTPAIVEATAFKSGIVIAQVNELVETVDRVDI 203 Query: 121 PADWVSFAIKAPTPHYIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 180 P DWV F I AP P+ IEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT Sbjct: 204 PGDWVDFVILAPKPNVIEPLFTRDPAQISEIQVLMAMMAIKGIYAEYGVQRLNHGIGFDT 263 Query: 181 AAIELILPTYAESLGLRGKICKHWALNPHPALIPAIEAGFVESVHSFGSELGMEDYIRAR 240 AAIEL+LPTYAESLGL+GKIC HWALNPHPALIPAIEAG+VESVHSFGSELGME+YIRAR Sbjct: 264 AAIELLLPTYAESLGLKGKICNHWALNPHPALIPAIEAGWVESVHSFGSELGMENYIRAR 323 Query: 241 PDVFFVGPDGSMRSNRAFSQTAGHYGCDMFIGSTLQIDLQGNSSTATLGRIAGFGGAPNM 300 PDVFF G DGS+RSNRA Q AGHY CDMFIGSTLQIDL G+SSTATLGRIAGFGGAPNM Sbjct: 324 PDVFFTGADGSLRSNRALCQAAGHYACDMFIGSTLQIDLNGHSSTATLGRIAGFGGAPNM 383 Query: 301 GADARGRRHASEAWLKAGQQARAGR---NTIPRGQKLVVQTVETFREHMQPAFVEKLDAW 357 GADARGRRHA+ AWLKAG QA GR + +PRGQKLVVQ VETFREHMQPAFVEKLDAW Sbjct: 384 GADARGRRHATPAWLKAGAQAHQGRTGVSAMPRGQKLVVQIVETFREHMQPAFVEKLDAW 443 Query: 358 QLGEQAKMPIPPVMIYGDDVTHILTEEGIANLLLCRTEEEREQAIRGVAGYTAVGMGRDK 417 QL EQA M IPPVMIYGDDVTHILTEEGIANLLLCRT+EEREQAIRGVAGYT VG+ RD+ Sbjct: 444 QLAEQAHMEIPPVMIYGDDVTHILTEEGIANLLLCRTDEEREQAIRGVAGYTPVGLARDR 503 Query: 418 RMVENLRDRGIIRRAEDLGIDKRMATRDLLAAKNMKDLVRASGGLYNPPKRFRNW 472 RMVENLRDRGII+RAED+GIDKR ATR LLAA+ M+DLVRASGGLY+PPKRFRNW Sbjct: 504 RMVENLRDRGIIQRAEDIGIDKRDATRSLLAARTMRDLVRASGGLYDPPKRFRNW 558