BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3262.p (346 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase [Herbaspi... 461 e-128 emb|CBJ40131.1| putative glyoxylate reductase [Ralstonia solanac... 280 2e-73 ref|YP_003749422.1| glyoxylate reductase [Ralstonia solanacearum... 280 3e-73 ref|NP_522066.1| 2-hydroxyacid dehydrogenase [Ralstonia solanace... 279 5e-73 ref|ZP_07674293.1| D-isomer specific 2-hydroxyacid dehydrogenase... 278 8e-73 >ref|YP_003776080.1| D-3-phosphoglycerate dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64172.1| D-3-phosphoglycerate dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 230/244 (94%), Positives = 237/244 (97%) Query: 34 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDAMIAGPAKKVAVVLTNGSTGLTADE 93 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRD MIAGPA+KVAVVLTNGSTGLTA+E Sbjct: 1 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDEMIAGPARKVAVVLTNGSTGLTAEE 60 Query: 94 MRALPHLQLVCALGAGFENIDAAHAKAHGIEIATGAGTNEDCVADHTLGLLLAILRNIPV 153 MRALPHLQLVC LGAGFEN+D AHA+AHGIEIATGAGTNEDCVADH LGLLLAILRNIPV Sbjct: 61 MRALPHLQLVCTLGAGFENVDVAHAEAHGIEIATGAGTNEDCVADHALGLLLAILRNIPV 120 Query: 154 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD 213 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD Sbjct: 121 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD 180 Query: 214 FHYFPDVAQLAGWADCLIVAAPGGAQTHHLINARALEELGPKGYLVNIGRGSIVDTEALA 273 +HYFPDVAQLAGWADCLIVAAPGGAQT HLINAR LEELGP+GYLVNIGRGSIVDT+AL Sbjct: 181 YHYFPDVAQLAGWADCLIVAAPGGAQTRHLINARVLEELGPQGYLVNIGRGSIVDTDALG 240 Query: 274 AALS 277 AALS Sbjct: 241 AALS 244 >emb|CBJ40131.1| putative glyoxylate reductase [Ralstonia solanacearum CMR15] Length = 310 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 143/243 (58%), Positives = 178/243 (73%) Query: 34 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDAMIAGPAKKVAVVLTNGSTGLTADE 93 M+P LL+LI ++ + A I H+ ++YAP R RDA +A V VVLTNGSTGL+ E Sbjct: 1 MQPTLLILIAVAADHLARIGQHFHVIYAPTRAERDAAVARDGHAVRVVLTNGSTGLSGPE 60 Query: 94 MRALPHLQLVCALGAGFENIDAAHAKAHGIEIATGAGTNEDCVADHTLGLLLAILRNIPV 153 + A+P L+L CALGAG+ENID A+A G+ +A GAGTN+ CVADH +GLLLA +R IP Sbjct: 61 IAAMPALELACALGAGYENIDVQAARARGVVVANGAGTNDACVADHAIGLLLATVRGIPK 120 Query: 154 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD 213 LDR TR+G WR+ IPLQP + GKR+GIVG+G IG +IARRAA FD +I Y NRK R+DV Sbjct: 121 LDRATRNGIWRDDIPLQPGVWGKRLGIVGLGTIGLQIARRAAGFDMQIGYHNRKPREDVP 180 Query: 214 FHYFPDVAQLAGWADCLIVAAPGGAQTHHLINARALEELGPKGYLVNIGRGSIVDTEALA 273 + YF + +A WAD LIVA PGGAQT HL+N LE LGP GY+VNI RGS+VDT AL Sbjct: 181 YRYFDAIGVMAEWADFLIVATPGGAQTRHLVNQDVLEALGPTGYVVNIARGSVVDTAALE 240 Query: 274 AAL 276 AA+ Sbjct: 241 AAI 243 >ref|YP_003749422.1| glyoxylate reductase [Ralstonia solanacearum PSI07] emb|CBJ34779.1| putative glyoxylate reductase [Ralstonia solanacearum PSI07] Length = 317 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 144/243 (59%), Positives = 178/243 (73%) Query: 34 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDAMIAGPAKKVAVVLTNGSTGLTADE 93 M+P LL+LI ++ ++ A I H+ ++YAP R RDA IA V VVLTNGSTGL+ E Sbjct: 8 MQPTLLILIAMAADNLARIDQHFHVIYAPTRAERDAAIARDGHAVRVVLTNGSTGLSGLE 67 Query: 94 MRALPHLQLVCALGAGFENIDAAHAKAHGIEIATGAGTNEDCVADHTLGLLLAILRNIPV 153 + A+P L+L CALGAG+ENID A+AHG+ +A GAGTN+ CVADH +GLLLA +R IP Sbjct: 68 IAAMPALELACALGAGYENIDVQAARAHGVVVANGAGTNDACVADHAMGLLLAAVRGIPK 127 Query: 154 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD 213 LDR TR+G WR+ IPLQP + GKR+GIVG+G IG +IARRAA FD +I Y NRK R DV Sbjct: 128 LDRATRNGVWRDDIPLQPGVWGKRLGIVGLGTIGLQIARRAAGFDMQIGYHNRKPRADVP 187 Query: 214 FHYFPDVAQLAGWADCLIVAAPGGAQTHHLINARALEELGPKGYLVNIGRGSIVDTEALA 273 + YF + +A WAD LIVA PGGAQT HL+N LE LGP G +VNI RGS+VDT AL Sbjct: 188 YRYFDALGTMAEWADFLIVATPGGAQTRHLVNRDVLEALGPNGCVVNIARGSVVDTAALE 247 Query: 274 AAL 276 AA+ Sbjct: 248 AAI 250 >ref|NP_522066.1| 2-hydroxyacid dehydrogenase [Ralstonia solanacearum GMI1000] emb|CAD17656.1| putative d-3-phosphoglycerate dehydrogenase; oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 344 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 149/267 (55%), Positives = 188/267 (70%), Gaps = 2/267 (0%) Query: 12 NRMALIAFSFTSSFSSSGQVPL--MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDA 69 +R A+IA +S PL M+P LL+LI ++ + A I H+ ++YAP R RDA Sbjct: 11 DRRAMIAGRRAASERRDTFPPLLTMQPTLLILIAMAADHLARIGQHFHVIYAPTRAERDA 70 Query: 70 MIAGPAKKVAVVLTNGSTGLTADEMRALPHLQLVCALGAGFENIDAAHAKAHGIEIATGA 129 + V VVLTNGSTGL+A E+ A+P L+L CALGAG+ENID A+A G+ +A GA Sbjct: 71 AVTRDGHAVRVVLTNGSTGLSAPEIAAMPALELACALGAGYENIDVQAARARGVVVANGA 130 Query: 130 GTNEDCVADHTLGLLLAILRNIPVLDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKK 189 GTN+ CVADH +GLLLA +R IP LDR TR+G WR+ IPLQP + GKR+GIVG+G IG + Sbjct: 131 GTNDACVADHAIGLLLATVRGIPKLDRATRNGIWRDDIPLQPGVWGKRLGIVGLGTIGLQ 190 Query: 190 IARRAAAFDAEIAYCNRKKRDDVDFHYFPDVAQLAGWADCLIVAAPGGAQTHHLINARAL 249 IARRAA FD +I Y NRK R++V + YF + +A WAD LIVA PGGAQT HL+N L Sbjct: 191 IARRAAGFDMQIGYHNRKPRENVPYRYFDAIGAMAEWADFLIVATPGGAQTRHLVNRDVL 250 Query: 250 EELGPKGYLVNIGRGSIVDTEALAAAL 276 E LGP GY+VNI RGS+VDT AL AA+ Sbjct: 251 EALGPTGYVVNIARGSVVDTAALEAAI 277 >ref|ZP_07674293.1| D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ralstonia sp. 5_7_47FAA] gb|EFP67409.1| D-isomer specific 2-hydroxyacid dehydrogenase family protein [Ralstonia sp. 5_7_47FAA] Length = 311 Score = 278 bits (712), Expect = 8e-73, Method: Composition-based stats. Identities = 145/243 (59%), Positives = 180/243 (74%) Query: 34 MKPPLLVLIHLSEESTATIAAHYDILYAPDRQRRDAMIAGPAKKVAVVLTNGSTGLTADE 93 M+P LL+LI ++ E+ A IA H+ +++AP R RDA IA + V +VLTNGSTGLT E Sbjct: 1 MQPTLLLLIAMTPENMAQIAEHFRVIHAPTRAERDAAIARDGRDVRIVLTNGSTGLTGAE 60 Query: 94 MRALPHLQLVCALGAGFENIDAAHAKAHGIEIATGAGTNEDCVADHTLGLLLAILRNIPV 153 + A+P L+L CALGAG+ENID A+A G+ +A GAGTN+ CVADH GLLLA +R IP Sbjct: 61 IAAMPKLELACALGAGYENIDVEAARARGVAVANGAGTNDACVADHAFGLLLATVRGIPK 120 Query: 154 LDRYTRDGGWRETIPLQPQLAGKRVGIVGMGNIGKKIARRAAAFDAEIAYCNRKKRDDVD 213 LDR TR+G WR+ IPLQP + GKR+GIVG+G IG +IARRAA FD +IAY NRK R+ V Sbjct: 121 LDRSTRNGVWRDDIPLQPGVCGKRLGIVGLGTIGMQIARRAAGFDMQIAYHNRKPREGVS 180 Query: 214 FHYFPDVAQLAGWADCLIVAAPGGAQTHHLINARALEELGPKGYLVNIGRGSIVDTEALA 273 + YF + +A WAD LIVA PGGAQT HL+N LE LGP GY+VNI RGS+VDT AL Sbjct: 181 YRYFDALKDMADWADFLIVATPGGAQTKHLVNQTILEALGPNGYVVNIARGSVVDTAALE 240 Query: 274 AAL 276 AA+ Sbjct: 241 AAI 243