BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3255.p (180 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775101.1| DNA repair system specific for alkylated DNA... 284 5e-75 ref|YP_004110100.1| 2OG-Fe(II) oxygenase [Rhodopseudomonas palus... 248 3e-64 ref|YP_002008781.1| alkylated DNA repair protein [Cupriavidus ta... 247 6e-64 ref|YP_634074.1| alkylated DNA repair protein AlkB [Myxococcus x... 245 2e-63 ref|YP_001238969.1| DNA-N1-methyladenine dioxygenase [Bradyrhizo... 243 9e-63 >ref|YP_003775101.1| DNA repair system specific for alkylated DNA repair protein [Herbaspirillum seropedicae SmR1] gb|ADJ63193.1| DNA repair system specific for alkylated DNA repair protein [Herbaspirillum seropedicae SmR1] Length = 217 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 149/180 (82%), Positives = 161/180 (89%) Query: 1 MAAIDKVLAASPLRHMQTPGGFRMSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMP 60 M I VLA SPLRHMQTPGGFRMSVAMSNCGQ+GWVTDRRGYRYQSLDP++ERDWP MP Sbjct: 38 MRDIATVLAQSPLRHMQTPGGFRMSVAMSNCGQYGWVTDRRGYRYQSLDPLSERDWPPMP 97 Query: 61 EAFAALAARASAAAGFAGFDPDACLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPAT 120 +F ALA RA+ AAGFA F PDACL+NRYEPGA+MSLHQD+NE+DM QPIVSVSLGLPAT Sbjct: 98 ASFLALAGRAAEAAGFAAFVPDACLVNRYEPGAKMSLHQDRNEIDMTQPIVSVSLGLPAT 157 Query: 121 FLFGGMARTDKPQRMRLESGDVVVWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRAR 180 FLFGGM R+DK QRMRL+SGDVVVWGGPARLAFHGVD +R EHPLTG CRYNLTFRRAR Sbjct: 158 FLFGGMERSDKAQRMRLDSGDVVVWGGPARLAFHGVDTVRQAEHPLTGACRYNLTFRRAR 217 >ref|YP_004110100.1| 2OG-Fe(II) oxygenase [Rhodopseudomonas palustris DX-1] gb|ADU45367.1| 2OG-Fe(II) oxygenase [Rhodopseudomonas palustris DX-1] Length = 216 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 124/179 (69%), Positives = 139/179 (77%) Query: 1 MAAIDKVLAASPLRHMQTPGGFRMSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMP 60 +AAID V+ +P RHM TPGG MSVAM++CG GWVTDRRGYRY DP + WP MP Sbjct: 37 LAAIDGVVTRAPFRHMMTPGGHTMSVAMTSCGTAGWVTDRRGYRYSPTDPDSAAPWPEMP 96 Query: 61 EAFAALAARASAAAGFAGFDPDACLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPAT 120 LA RASA AGFAGFDPDACLINRY PGARM+LHQDK+E+D PIVSVSLGLPAT Sbjct: 97 AVLRDLAQRASAEAGFAGFDPDACLINRYVPGARMALHQDKDEVDFSAPIVSVSLGLPAT 156 Query: 121 FLFGGMARTDKPQRMRLESGDVVVWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRA 179 F FGGMAR+DKP+R L GDV VWGGP+RL +HGV L+DGEHPL GR R NLTFR+A Sbjct: 157 FQFGGMARSDKPRRYELRHGDVFVWGGPSRLVYHGVLTLQDGEHPLLGRQRINLTFRKA 215 >ref|YP_002008781.1| alkylated DNA repair protein [Cupriavidus taiwanensis LMG 19424] emb|CAQ72729.1| Alkylated DNA repair protein [Cupriavidus taiwanensis LMG 19424] Length = 220 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 121/180 (67%), Positives = 142/180 (78%) Query: 1 MAAIDKVLAASPLRHMQTPGGFRMSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMP 60 +A + +LA +P RHM TPGG +MSVAM+NCG GWV+D RGYRY ++DP++ + WP MP Sbjct: 41 LADVQTILALAPWRHMVTPGGLKMSVAMTNCGACGWVSDARGYRYDAVDPLSGQAWPDMP 100 Query: 61 EAFAALAARASAAAGFAGFDPDACLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPAT 120 +F LAA A+ AGFAGF PDACLINRY PG R+SLHQD++E D PIVSVSLGLPA Sbjct: 101 ASFRELAASAAEQAGFAGFAPDACLINRYVPGTRLSLHQDRDERDFTAPIVSVSLGLPAV 160 Query: 121 FLFGGMARTDKPQRMRLESGDVVVWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRAR 180 FLFGGM R DKPQR+RL GDVVVWGGP+RLAFHGV PL DG+HPL G R NLTFR+AR Sbjct: 161 FLFGGMRRADKPQRIRLAHGDVVVWGGPSRLAFHGVAPLADGDHPLLGPLRINLTFRKAR 220 >ref|YP_634074.1| alkylated DNA repair protein AlkB [Myxococcus xanthus DK 1622] gb|ABF92660.1| alkylated DNA repair protein AlkB [Myxococcus xanthus DK 1622] Length = 215 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 121/180 (67%), Positives = 138/180 (76%) Query: 1 MAAIDKVLAASPLRHMQTPGGFRMSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMP 60 ++A+ V ASP RHM+TPGGFRMSVAM++CG +GWVTDR GYRY ++DPV R WP MP Sbjct: 36 LSAVQDVALASPFRHMETPGGFRMSVAMTSCGSWGWVTDRTGYRYAAVDPVQGRPWPEMP 95 Query: 61 EAFAALAARASAAAGFAGFDPDACLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPAT 120 F LA A+A AGF GF PDACL+NRYEPGA+MSLHQDK+E D PIVSVSLGLPA Sbjct: 96 AIFLRLAQFAAAKAGFEGFIPDACLVNRYEPGAKMSLHQDKDERDFTAPIVSVSLGLPAV 155 Query: 121 FLFGGMARTDKPQRMRLESGDVVVWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRAR 180 FLFGG R D+P R+RL GDVVVWGGPARL +HGV PL G HP G R NLTFR+AR Sbjct: 156 FLFGGAERADRPARVRLSHGDVVVWGGPARLRYHGVTPLEPGHHPQVGGHRINLTFRKAR 215 >ref|YP_001238969.1| DNA-N1-methyladenine dioxygenase [Bradyrhizobium sp. BTAi1] gb|ABQ35063.1| DNA-N1-methyladenine dioxygenase [Bradyrhizobium sp. BTAi1] Length = 217 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 123/180 (68%), Positives = 143/180 (79%) Query: 1 MAAIDKVLAASPLRHMQTPGGFRMSVAMSNCGQFGWVTDRRGYRYQSLDPVAERDWPAMP 60 +A I+ + A +P R M TPGG +MSVAM++CG GWVTDR GYRY +LDP + + WPA+P Sbjct: 38 IAVIEAIAAQAPFRRMMTPGGHQMSVAMTSCGSCGWVTDRTGYRYDALDPESGQPWPAIP 97 Query: 61 EAFAALAARASAAAGFAGFDPDACLINRYEPGARMSLHQDKNELDMDQPIVSVSLGLPAT 120 F LA +A++ AGFA F PDACLINRYEPGA+MSLHQD++E D+ PIVSVSLGLPAT Sbjct: 98 PLFRDLAEQAASEAGFADFAPDACLINRYEPGAKMSLHQDRDERDIGAPIVSVSLGLPAT 157 Query: 121 FLFGGMARTDKPQRMRLESGDVVVWGGPARLAFHGVDPLRDGEHPLTGRCRYNLTFRRAR 180 FLFGG+ RTDK QR RL GDVVVWGGPARLAFHG+ PL DGEH L GR R NLTFRRAR Sbjct: 158 FLFGGLKRTDKTQRYRLVHGDVVVWGGPARLAFHGIAPLADGEHALLGRRRINLTFRRAR 217