BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3249.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773619.1| outer membrane protein (porin) signal peptid... 414 e-113 ref|YP_003777672.1| outer membrane porin [Herbaspirillum seroped... 383 e-104 ref|YP_004754681.1| outer membrane protein [Collimonas fungivora... 343 4e-92 ref|YP_004751955.1| outer membrane protein [Collimonas fungivora... 259 4e-67 ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum... 255 1e-65 >ref|YP_003773619.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ61711.1| outer membrane protein (porin) signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 390 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 281/408 (68%), Positives = 314/408 (76%), Gaps = 28/408 (6%) Query: 1 MKKSLLALAVFGAFAGAAQAQTSSVSIYGILDTGVVYTSKAINGTANGTGSKFGLNSAVI 60 MKKSLLALAV GA A SSV+IYGI+DTGVVY SK T GTGSKF LNS VI Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGVVYQSKVATPTG-GTGSKFSLNSGVI 58 Query: 61 QGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTTNTLFRRKSVVGLSGGFGTVL 120 QGSRIGFKG EDLGGGLSAVFNLE GF NDTGALDDSKT+NTLFRRKSVVGL+G FG+VL Sbjct: 59 QGSRIGFKGTEDLGGGLSAVFNLEAGFSNDTGALDDSKTSNTLFRRKSVVGLAGNFGSVL 118 Query: 121 LGRQTDFADSISYLTSVGDFGFMTGSVGHNLDRLEGTRSNNSISYTTTSMNGFTGNLFYG 180 LGRQTDFAD+IS TSV DFG TG+ GHNLDRLEGTR+NNSISYTT ++NGFTGNL YG Sbjct: 119 LGRQTDFADTISSYTSVQDFGGWTGAAGHNLDRLEGTRTNNSISYTTANLNGFTGNLMYG 178 Query: 181 FGEQAGRTSAGQPLGLGAKYDNGPLGLGINYFQSKQGATPSDTSLQTTPATGVVGTGAGL 240 FGE AG+TSAGQ G+G KYDNGPLGLGINY+QSK G+TP+D SL + TG Sbjct: 179 FGETAGQTSAGQAFGVGGKYDNGPLGLGINYYQSKAGSTPADASL-------LAATGTNQ 231 Query: 241 TTIGTTDVQGSTAAKVLNLIASYQFGPARVYGNWSRVKQDLNT---------ASPTALPS 291 T GT + GSTA KVLN+ ASYQFGPARVYGNWSRVKQDLNT S + + Sbjct: 232 FTNGTNN--GSTAQKVLNVAASYQFGPARVYGNWSRVKQDLNTQANLTAAGVGSLATISN 289 Query: 292 KTLGSANKADIYEIGTAYSLTPTLKLLGAVTHTRADFNS-SSKGKLTQISLGTDYWLSKR 350 +TL ++NKADIYEIGTAYSL+P+LKLL AV HTRA F+ S K KLTQ+SLGTDYWLSKR Sbjct: 290 RTLAASNKADIYEIGTAYSLSPSLKLLAAVDHTRAQFDGVSGKAKLTQVSLGTDYWLSKR 349 Query: 351 TDLYAFLANIRASDMANSGVYGDATGNAATGGADASQTLVAVGVRHKF 398 TDLYAFLA +A+D+ N GV A + G D +Q VAVG+RHKF Sbjct: 350 TDLYAFLAYSKATDLNNPGV-------ADSSGTDGNQGAVAVGIRHKF 390 >ref|YP_003777672.1| outer membrane porin [Herbaspirillum seropedicae SmR1] emb|CAP19662.1| porin [Herbaspirillum seropedicae] gb|ADJ65764.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 387 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 265/404 (65%), Positives = 311/404 (76%), Gaps = 23/404 (5%) Query: 1 MKKSLLALAVFGAFAGAAQAQTSSVSIYGILDTGVVYTSKAINGTANG---TGSKFGLNS 57 MKKSLLALAV GA A SSV+IYGI+DTG+ Y+SK ANG TGSKFG+NS Sbjct: 1 MKKSLLALAVLGA-FAGAAQAQSSVTIYGIVDTGIAYSSKVGYTDANGNAATGSKFGINS 59 Query: 58 AVIQGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGAL--DDSKTTNTLFRRKSVVGLSGG 115 VIQGSRIGFKGVEDLGGGLSAVFNLETGF +D G L D+ T++ LFRRKSVVGLSGG Sbjct: 60 GVIQGSRIGFKGVEDLGGGLSAVFNLETGFTSDDGGLQGSDAVTSSNLFRRKSVVGLSGG 119 Query: 116 FGTVLLGRQTDFADSISYLTSVGDFGFMTGSVGHNLDRLEGTRSNNSISYTTTSMNGFTG 175 FGTVLLGRQTDFAD+IS T+V DFG + + G +L+RL+GTR+NNS+SYTT +++GFTG Sbjct: 120 FGTVLLGRQTDFADTISAYTAVADFGGVVANSGSSLNRLQGTRTNNSVSYTTANLSGFTG 179 Query: 176 NLFYGFGEQAGRTSAGQPLGLGAKYDNGPLGLGINYFQSKQGATPSDTSLQTTPATGVVG 235 NL YGFGEQAG+TSAGQ G+G KYDNGPLGLGINY+QSK G+TPSDTSL Sbjct: 180 NLIYGFGEQAGKTSAGQAYGIGGKYDNGPLGLGINYYQSKAGSTPSDTSLIPAAGATNAN 239 Query: 236 TGAGLTTIGTTDVQGSTAAKVLNLIASYQFGPARVYGNWSRVKQDLNTASPTALPSKTLG 295 T G V G+TA K LN++ASYQFGPARVY N+SRVKQDL +PT + + TL Sbjct: 240 TALG--------VAGNTALKSLNVVASYQFGPARVYANYSRVKQDLK-GTPT-VATATLA 289 Query: 296 SANKADIYEIGTAYSLTPTLKLLGAVTHTRADFNS-SSKGKLTQISLGTDYWLSKRTDLY 354 +A KAD YEIGTAYSL+P+LKLL AV H+RA FN ++KGKLTQISLG DY+LSKRTDLY Sbjct: 290 NAQKADTYEIGTAYSLSPSLKLLAAVDHSRATFNGVNTKGKLTQISLGADYFLSKRTDLY 349 Query: 355 AFLANIRASDMANSGVYGDATGNAATGGADASQTLVAVGVRHKF 398 AF++N+RASD+ N GV G AT G+DASQT + G+RHKF Sbjct: 350 AFVSNMRASDIQNPGVTGGAT------GSDASQTAIITGIRHKF 387 >ref|YP_004754681.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AAT42406.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK63858.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 390 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 241/409 (58%), Positives = 285/409 (69%), Gaps = 30/409 (7%) Query: 1 MKKSLLALAVFGAFAGAAQAQTSSVSIYGILDTGVVYTSKAINGTANGTGSKFGLNSAVI 60 MKKSL+ALAV GA A SSV+IYGI+DTG+VYTSKA+ T GTGSKF +NS +I Sbjct: 1 MKKSLIALAVLGA-IAGAAQAQSSVTIYGIVDTGIVYTSKALTSTG-GTGSKFSINSGII 58 Query: 61 QGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTTNTLFRRKSVVGLSGGFGTVL 120 QGSR+GFKGVEDLGGGL A+F LE GF NDTG L K T TLFRRKSVVGL G FG+VL Sbjct: 59 QGSRLGFKGVEDLGGGLKALFQLEAGFNNDTGGLQGDKGTTTLFRRKSVVGLGGNFGSVL 118 Query: 121 LGRQTDFADSISYLTSVGDFGFMTGSVGHNLDRLEGTRSNNSISYTTTSMNGFTGNLFYG 180 LGRQTD D +S TSV DFG +TGSVGHNLDRLEGTR+NNSI Y T ++GFTG+L YG Sbjct: 119 LGRQTDILDDVSQWTSVQDFGGVTGSVGHNLDRLEGTRTNNSIRYNTPDVSGFTGSLIYG 178 Query: 181 FGEQAGRTSAGQPLGLGAKYDNGPLGLGINYFQSKQGA-TPSDTSLQTTPATGVVGTGAG 239 FGE AG+TSAGQ G GA+Y NGPLGL Y+QSK G+ T SDTSL G Sbjct: 179 FGETAGQTSAGQSFGAGAQYANGPLGLFAAYYQSKLGSPTASDTSLIN-----------G 227 Query: 240 LTTIGTTDVQGSTAAKVLNLIASYQFGPARVYGNWSRVKQDLNTASPTALP------SKT 293 + G TA K ++ ASYQ GPAR+YGNWSR KQ L T+S +A S T Sbjct: 228 SQVANFSGKSGDTALKTFSIGASYQAGPARLYGNWSRTKQPLATSSNSATTGILQPGSFT 287 Query: 294 LGSAN--KADIYEIGTAYSLTPTLKLLGAVTHTRADFNS--SSKGKLTQISLGTDYWLSK 349 +GS N KADI+E+G Y++T L LL +V + + F + KGKLTQ +LGTDY+LSK Sbjct: 288 VGSFNNTKADIFELGVNYAVTAPLHLLASVQYNKLTFADAGADKGKLTQFNLGTDYFLSK 347 Query: 350 RTDLYAFLANIRASDMANSGVYGDATGNAATGGADASQTLVAVGVRHKF 398 RTDLYAF++N+RA D N GVYGD+ G+ +QT VAVG+RHKF Sbjct: 348 RTDLYAFVSNLRAKDAVNPGVYGDSLGDT------GNQTAVAVGIRHKF 390 >ref|YP_004751955.1| outer membrane protein [Collimonas fungivorans Ter331] gb|AEK61132.1| Outer membrane protein [Collimonas fungivorans Ter331] Length = 370 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 194/406 (47%), Positives = 246/406 (60%), Gaps = 44/406 (10%) Query: 1 MKKSLLALAVFGAFAGAAQAQTSSVSIYGILDTGVVYTSKAINGTANGTGSKFGLNSAVI 60 MKK++ ALA G AQAQT+ V+IYG++D G+ YTSK G N S+ L+S + Sbjct: 1 MKKTVFALAALGLIGANAQAQTN-VTIYGVIDAGLTYTSKV--GPKND--SRISLDSGDM 55 Query: 61 QGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTTNTLFRRKSVVGLSGGFGTVL 120 SRIGF+G EDLGGGL A+F LE GF D G+L T +TLF RK+VVGLSG FGTV Sbjct: 56 ATSRIGFRGTEDLGGGLKAIFQLENGFNADDGSL---ATASTLFDRKAVVGLSGSFGTVT 112 Query: 121 LGRQTDFADSI-SYLTSVGDFGFMTGSVGH--NLDRLEGTRSNNSISYTTTSMNGFTGNL 177 LGRQTD+ D I S TSV FG GH NLDR+ G R+NNSI Y + +++GFTG+L Sbjct: 113 LGRQTDYLDDIGSKYTSVQTFGSNGIKAGHFNNLDRVGGVRANNSIRYDSANLSGFTGSL 172 Query: 178 FYGFGEQAGRTSAGQPLGLGAKYDNGPLGLGINYFQSKQGATPSDTSLQTTPATGVVGTG 237 FYGFGE AG+TSAGQ GL Y NGP G+G+ YFQ+K A + Sbjct: 173 FYGFGEVAGQTSAGQSFGLAGNYANGPFGIGLGYFQTKLAADALPSK------------- 219 Query: 238 AGLTTIGTTDVQGSTAAKVLNLIASYQFGPARVYGNWSRVKQ-DLNTASPTALPSKTLGS 296 G T K L ASYQ GPA++YG WS+ K+ + T L + T + Sbjct: 220 -----------AGDTDLKTFTLGASYQAGPAKIYGAWSQTKRPLAAALAATGLVNIT--T 266 Query: 297 ANKADIYEIGTAYSLTPTLKLLGAVTHTRADFN----SSSKGKLTQISLGTDYWLSKRTD 352 A KA+I+++G YSL+ L LL +V + RAD + S+KGK TQ++LG DY+LSKRTD Sbjct: 267 ATKANIFDLGVDYSLSGNLHLLASVIYDRADLSRKTAGSTKGKTTQLNLGVDYYLSKRTD 326 Query: 353 LYAFLANIRASDMANSGVYGDATGNAATGGADASQTLVAVGVRHKF 398 LYA N RA+D+ N GV A +A D SQ + VG+RHKF Sbjct: 327 LYALYTNQRANDVNNPGVINAAYSSAPAD--DTSQNVFRVGLRHKF 370 >ref|YP_003774420.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] gb|ADJ62512.1| porin signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 184/422 (43%), Positives = 242/422 (57%), Gaps = 41/422 (9%) Query: 1 MKKSLLALAVFGAFAGAAQAQTSSVSIYGILDTGVVYTSKAINGTANGTGSKFGLNSAVI 60 MKKSLLALAV GAFAGAA AQ+SS++IYG +D + YT+K I TGS + S ++ Sbjct: 1 MKKSLLALAVLGAFAGAAHAQSSSITIYGAIDASLTYTNK-IATDGKNTGSLTAVESGLV 59 Query: 61 QGSRIGFKGVEDLGGGLSAVFNLETGFKNDTGALDDSKTTNTLFRRKSVVGLSGGFGTVL 120 +GSR+G KG EDLGGGL AVF LE GF DTG K ++ R++ VGLSG FGTVL Sbjct: 60 KGSRLGIKGSEDLGGGLKAVFTLENGFNVDTGEAGQGKL---MWGRQTTVGLSGNFGTVL 116 Query: 121 LGRQTDFADSISYLTSVGDFGFMTGSVGHNLDRLEGTRSNNSISYTTTSMNGFTGNLFYG 180 +GRQ D + I + S G FG LDR +G R NNSI Y + + NG + + YG Sbjct: 117 VGRQNDPLNDIGGIASAGGFGVPGTVHSKGLDRTDGQRLNNSIRYNSPNFNGLSFSGIYG 176 Query: 181 FGEQAGRTSAGQPLGLGAKYDNGPLGLGINYFQSKQGATPSDTSLQTTPATGVVGTGAGL 240 FGEQ GR G+ +GLG++Y NGPL LG+ YFQSK G +S V A Sbjct: 177 FGEQVGRAVGGRSIGLGSQYVNGPLSLGLGYFQSKMGGGSDGSS--------DVNAKAAC 228 Query: 241 TTIGTTDVQGSTAAKVLNLIASYQFGPARVYGNWS-----------RVKQDLNTAS---- 285 G D G T K L A+YQFGPA+VYG +S +V++D N + Sbjct: 229 NGAGEKDHAGDTCLKTWTLAAAYQFGPAKVYGAFSHVRLPLAKLHTKVRKDNNFGAMYDA 288 Query: 286 -------PTALPSKTLGSAN--KADIYEIGTAYSLTPTLKLLGAVTHTRADFNSSSKGKL 336 P+ + ++G AN + ++IG +Y L P+L L+ AV HTRA F ++ G+L Sbjct: 289 KTGTGYNPSDATAFSIGGANHKSSQTFDIGMSYQLMPSLTLMSAVQHTRAKFVGAASGRL 348 Query: 337 TQISLGTDYWLSKRTDLYAFLANIRASDMANSGVYGDATGNAATGGADASQTLVAVGVRH 396 Q++LG Y LSKRT YA + N+R+SDM N G+ D G D SQT ++ G+ H Sbjct: 349 LQLNLGAKYDLSKRTSAYALVRNLRSSDMYNVGLSKD-----QEPGIDRSQTAISTGLIH 403 Query: 397 KF 398 F Sbjct: 404 TF 405