BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3243.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353453.1| flagellar basal-body rod protein FlgB [Janth... 114 3e-24 gb|EDQ48677.1| predicted protein [Physcomitrella patens subsp. p... 90 1e-16 ref|YP_003523192.1| flagellar basal-body rod protein FlgB [Sider... 89 2e-16 ref|YP_003278524.1| flagellar basal-body rod protein FlgB [Comam... 89 2e-16 ref|YP_145602.1| putative flagellar basal-body rod protein [Rals... 87 6e-16 >ref|YP_001353453.1| flagellar basal-body rod protein FlgB [Janthinobacterium sp. Marseille] gb|ABR91587.1| flagellar basal-body rod protein FlgB [Janthinobacterium sp. Marseille] Length = 141 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 89/139 (64%), Gaps = 2/139 (1%) Query: 2 NVIGTNSLPNDGGEKDEKFWKNAVRLVEKRLGLLVSNIANADTPNYKARDIAFTSALRQA 61 NV +P D++FW+ +VRL KRL ++ SNIANADTPNYKARDI F +AL +A Sbjct: 3 NVTNKGHIPIGNQSSDDRFWETSVRLFSKRLEVVASNIANADTPNYKARDIDFKTALNRA 62 Query: 62 MTNSKLPVFSKGTATVSND-SPLEALILYRSPTQPSADGNTVDLDQESATFSHEAIRYQF 120 + + KGT S+ + + +LYR+P Q S DGNTV+LD E A F+ AIRY+F Sbjct: 63 LAAPD-KIVPKGTLPQSSAVNDVLPKLLYRTPYQQSVDGNTVELDTERAVFTTTAIRYEF 121 Query: 121 FLDKAVGEYNEIGDLYKKM 139 +++AV Y E+ DL+K + Sbjct: 122 AMEQAVSTYKELSDLFKNL 140 >gb|EDQ48677.1| predicted protein [Physcomitrella patens subsp. patens] Length = 515 Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 2/124 (1%) Query: 19 KFWKNAVRLVEKRLGLLVSNIANADTPNYKARDIAFTSAL-RQAMTNSKLPVFSKGTATV 77 +F A+++ +RL ++ SNIANADTP Y+A+D+ F AL R T + SKG Sbjct: 391 RFEDIALKIRTQRLAIIASNIANADTPGYQAKDLDFKEALERSNATMLSVSSTSKGHIPS 450 Query: 78 SN-DSPLEALILYRSPTQPSADGNTVDLDQESATFSHEAIRYQFFLDKAVGEYNEIGDLY 136 S S + + +R +Q S D NTVDLDQE A+F AIR + + +AV EY+EIGD+ Sbjct: 451 SEMKSIYDTQVAFRPASQNSLDRNTVDLDQERASFIDNAIRTELAMKQAVEEYSEIGDML 510 Query: 137 KKMV 140 KM+ Sbjct: 511 AKMI 514 >ref|YP_003523192.1| flagellar basal-body rod protein FlgB [Sideroxydans lithotrophicus ES-1] gb|ADE10805.1| flagellar basal-body rod protein FlgB [Sideroxydans lithotrophicus ES-1] Length = 134 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 5/106 (4%) Query: 19 KFWKNAVRLVEKRLGLLVSNIANADTPNYKARDIAFTSALRQAMTNS--KLPVFSKGT-- 74 +F + A+ L R L+ SNIANADTPNYKA+DI F SAL+ A++ S KL V Sbjct: 10 QFQQTALNLRAARQELIASNIANADTPNYKAKDIDFASALQGALSGSGEKLQVAVTSPLH 69 Query: 75 -ATVSNDSPLEALILYRSPTQPSADGNTVDLDQESATFSHEAIRYQ 119 A + +S + A +LYR P QPSADGNTVD+D E A F+ A+RY+ Sbjct: 70 LAGTTGESVMGAPVLYRKPLQPSADGNTVDMDVERAQFADNALRYE 115 >ref|YP_003278524.1| flagellar basal-body rod protein FlgB [Comamonas testosteroni CNB-2] ref|ZP_07046879.1| flagellar basal-body rod protein FlgB [Comamonas testosteroni S44] gb|ACY33228.1| flagellar basal-body rod protein FlgB [Comamonas testosteroni CNB-2] gb|EFI59485.1| flagellar basal-body rod protein FlgB [Comamonas testosteroni S44] Length = 127 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 78/124 (62%), Gaps = 3/124 (2%) Query: 19 KFWKNAVRLVEKRLGLLVSNIANADTPNYKARDIAFTSALRQAMTNSKLPVFSKGTATVS 78 +F A+ L KR+ +L SNIANADTP Y+A+DI F +AL + L V S + + Sbjct: 5 RFEDAALYLRVKRMEVLASNIANADTPGYQAKDIDFKAALEETQ-RQMLTVQSTNKSHLG 63 Query: 79 NDSP--LEALILYRSPTQPSADGNTVDLDQESATFSHEAIRYQFFLDKAVGEYNEIGDLY 136 N +P ++ I +R +Q + D NTVDLDQE A+F+ AIR QF +++AV EY E+G + Sbjct: 64 NIAPTSIDPQIAFRPVSQNAMDRNTVDLDQERASFTANAIRTQFAMNQAVDEYVEMGQML 123 Query: 137 KKMV 140 K+V Sbjct: 124 SKLV 127 >ref|YP_145602.1| putative flagellar basal-body rod protein [Ralstonia metallidurans CH34] ref|YP_581780.1| flagellar basal-body rod protein FlgB [Cupriavidus metallidurans CH34] ref|YP_001899325.1| flagellar basal-body rod protein FlgB [Ralstonia pickettii 12J] emb|CAI11251.1| putative flagellar basal-body rod protein [Cupriavidus metallidurans CH34] gb|ABF12830.1| flagellar basal-body rod protein FlgB [Cupriavidus metallidurans CH34] gb|ACD26893.1| flagellar basal-body rod protein FlgB [Ralstonia pickettii 12J] Length = 140 Score = 87.4 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 7/123 (5%) Query: 22 KNAVRLVEKRLGLLVSNIANADTPNYKARDIAFTSALRQAMTNSKLPVFSKGTATV---- 77 + A+RL +R LL +NIANADTPNYKARDI F++ L + M + + F+ T T Sbjct: 18 EQALRLRTRRFELLSANIANADTPNYKARDIDFSAELDRVMGSGQ--NFAGMTMTSPRHI 75 Query: 78 -SNDSPLEALILYRSPTQPSADGNTVDLDQESATFSHEAIRYQFFLDKAVGEYNEIGDLY 136 ++ LE ++YR P Q S DGNTV++D E F+ A+R +F + K EY ++ LY Sbjct: 76 EASKPALEEDLMYRVPLQSSMDGNTVEMDVERVAFAENALRMRFSIQKTADEYKDMLKLY 135 Query: 137 KKM 139 + M Sbjct: 136 QDM 138