BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3241.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004387468.1| hypothetical protein Alide2_1559 [Alicycliph...    61   5e-08

>ref|YP_004387468.1| hypothetical protein Alide2_1559 [Alicycliphilus denitrificans
          K601]
 gb|AEB83952.1| hypothetical protein Alide2_1559 [Alicycliphilus denitrificans
          K601]
          Length = 111

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 37/59 (62%)

Query: 1  MQANVNRMRNAFNEWLITHELLGDAQFYPIEEWRARGKDYHDDALLVLTIDGSSTQMAL 59
          M  N+ RMR A  EW+I  E+LGDA F  IE WRAR + Y +D+LLVL  D S+    L
Sbjct: 6  MSRNLERMRAALTEWMIKEEILGDAFFVDIEAWRARNEPYGNDSLLVLVFDSSTLHTML 64