BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3235.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001633192.1| cation efflux system protein cusF precursor ...    82   3e-14
ref|YP_001349370.1| heavy metal efflux system protein [Pseudomon...    80   1e-13
ref|ZP_05826473.1| heavy metal efflux pump [Acinetobacter sp. RU...    75   4e-12
ref|ZP_06067636.1| heavy metal efflux pump [Acinetobacter junii ...    74   8e-12
gb|EDZ39035.1| Hypothetical protein CGL2_11276203 [Leptospirillu...    68   4e-10

>ref|YP_001633192.1| cation efflux system protein cusF precursor [Bordetella petrii DSM
           12804]
 emb|CAP44925.1| probable Cation efflux system protein cusF precursor [Bordetella
           petrii]
          Length = 86

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/80 (51%), Positives = 57/80 (71%)

Query: 33  ADAGEMVSHGTGVIKSLDPKQKTVTLAHQPIKQLNWPAMTMGFKVSDEKMLQGLKVGDQV 92
           +D+    + GTG I +LD +  TV L+H PIK LNWPAMTM F V+++K+LQGLKVGD+V
Sbjct: 7   SDSTAQSAEGTGAIDALDTQSGTVKLSHGPIKSLNWPAMTMSFPVAEKKLLQGLKVGDKV 66

Query: 93  TFDLKGSGAAPVVTGIRPAK 112
            F L+   ++PV+T I P +
Sbjct: 67  KFSLRNGSSSPVITKITPTQ 86


>ref|YP_001349370.1| heavy metal efflux system protein [Pseudomonas aeruginosa PA7]
 gb|ABR84314.1| heavy metal efflux system protein, putative [Pseudomonas aeruginosa
           PA7]
          Length = 108

 Score = 79.7 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 6/103 (5%)

Query: 7   AMLFTASLGSVSPVFAADMQGMKMGQADAGEMVSHGTGVIKSLDPKQKTVTLAHQPIKQL 66
           A+LF  S     P F+  M   +M  A + +  +   G I+++DP++ TVTLAH P+  L
Sbjct: 10  ALLFALSF----PAFSESMPDRRMDGAKSYQ-TARAEGTIEAIDPERHTVTLAHGPVVAL 64

Query: 67  NWPAMTMGFKVSDEKMLQGLKVGDQVTFDLKGSGAAPVVTGIR 109
            WP MTMGFK SDE+ L+GL+VGD+V F+ +  G +  +  IR
Sbjct: 65  QWPPMTMGFKTSDEQ-LEGLRVGDRVEFEFRSEGGSSRILSIR 106


>ref|ZP_05826473.1| heavy metal efflux pump [Acinetobacter sp. RUH2624]
 gb|EEW98160.1| heavy metal efflux pump [Acinetobacter sp. RUH2624]
          Length = 121

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 57/104 (54%)

Query: 7   AMLFTASLGSVSPVFAADMQGMKMGQADAGEMVSHGTGVIKSLDPKQKTVTLAHQPIKQL 66
           A L   S    S    AD    +M +  +    +   GVI ++D K+  +TL H+ I  +
Sbjct: 15  AALSACSKNEASEQKKADAPMEQMNKESSTATTAQAVGVITAIDTKENILTLDHEAIPAI 74

Query: 67  NWPAMTMGFKVSDEKMLQGLKVGDQVTFDLKGSGAAPVVTGIRP 110
           NWPAM MGFKV+D  +L GL VGD+V F+LK  G   ++  ++P
Sbjct: 75  NWPAMKMGFKVADPSLLNGLTVGDKVDFELKAEGENYIIIAVKP 118


>ref|ZP_06067636.1| heavy metal efflux pump [Acinetobacter junii SH205]
 gb|EEY91707.1| heavy metal efflux pump [Acinetobacter junii SH205]
          Length = 121

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/104 (37%), Positives = 57/104 (54%)

Query: 7   AMLFTASLGSVSPVFAADMQGMKMGQADAGEMVSHGTGVIKSLDPKQKTVTLAHQPIKQL 66
           A L   S    S    AD    +M +  +    +   GVI ++D K+  +TL H+ I  +
Sbjct: 15  AALSACSKNEASEQKKADAPMEQMNKESSTATTAQAVGVITAIDMKENILTLDHEAIPAI 74

Query: 67  NWPAMTMGFKVSDEKMLQGLKVGDQVTFDLKGSGAAPVVTGIRP 110
           NWPAM MGFKV+D  +L GL VGD+V F+LK  G   ++  ++P
Sbjct: 75  NWPAMKMGFKVADPSLLNGLTVGDKVDFELKAEGENYIIIAVKP 118


>gb|EDZ39035.1| Hypothetical protein CGL2_11276203 [Leptospirillum sp. Group II
           '5-way CG']
          Length = 132

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 41/70 (58%)

Query: 39  VSHGTGVIKSLDPKQKTVTLAHQPIKQLNWPAMTMGFKVSDEKMLQGLKVGDQVTFDLKG 98
           V HG GV+KSLD K  TVT+ H PIK+  W  MTM F V     L  LK G+QV FD+  
Sbjct: 59  VGHGKGVVKSLDTKAGTVTITHGPIKEFGWKGMTMAFSVKHRSFLSSLKKGEQVQFDVIQ 118

Query: 99  SGAAPVVTGI 108
               PV+T I
Sbjct: 119 DNNGPVITKI 128