BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3233.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001099878.1| putative resolvase [Herminiimonas arsenicoxy...   219   2e-55
ref|ZP_05619835.1| cointegrate resolution protein S [Enhydrobact...   214   3e-54
ref|ZP_07775311.1| phage integrase [Pseudomonas fluorescens WH6]...   208   2e-52
ref|YP_002872568.1| cointegrase [Pseudomonas fluorescens SBW25] ...   208   3e-52
ref|YP_001099831.1| hypothetical protein HEAR1539 [Herminiimonas...   206   1e-51

>ref|YP_001099878.1| putative resolvase [Herminiimonas arsenicoxydans]
 emb|CAL61751.1| putative cointegrate resolution protein S (TnpS protein)
           [Herminiimonas arsenicoxydans]
          Length = 322

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 106/152 (69%), Positives = 123/152 (80%)

Query: 10  IDDYLHAATRDNTRRSYRAAVKHFEVEWGGFLPATADSLVRYLAEHAGKLAHNTLKQRIS 69
           +D Y+HAATRDNTRRSY++AV+HFEVEWGGFLPATADSL RYL +HA  L+ NTLKQR++
Sbjct: 4   LDTYIHAATRDNTRRSYQSAVRHFEVEWGGFLPATADSLARYLVDHAKSLSINTLKQRLA 63

Query: 70  ALGQWHVDQGFPDPTKAPVVRKMLRGILELHPAQEKRAKPLQLAALEQTIAHLERERELA 129
           AL QWH+DQGFPDPTKAPVVRK+LRGI  LHPAQEKRA+PLQ+  LEQ    L++    +
Sbjct: 64  ALAQWHIDQGFPDPTKAPVVRKVLRGIQALHPAQEKRARPLQIEQLEQVTQSLDQTIAAS 123

Query: 130 RQQARFADLLRHTRDKALLLIGFWRGFRSDEL 161
                    LRHTRDKALLL+GFWRGFR DEL
Sbjct: 124 VHAGHRPAQLRHTRDKALLLLGFWRGFRGDEL 155


>ref|ZP_05619835.1| cointegrate resolution protein S [Enhydrobacter aerosaccus SK60]
 gb|EEV23037.1| cointegrate resolution protein S [Enhydrobacter aerosaccus SK60]
          Length = 320

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/152 (65%), Positives = 122/152 (80%)

Query: 10  IDDYLHAATRDNTRRSYRAAVKHFEVEWGGFLPATADSLVRYLAEHAGKLAHNTLKQRIS 69
           +D Y+HAATRDNTRRSY++A++HFE EWGGFLPATAD + RYL +H G L+ NTL+QR++
Sbjct: 4   LDQYVHAATRDNTRRSYQSAIRHFETEWGGFLPATADGVARYLVDHVGLLSINTLRQRLA 63

Query: 70  ALGQWHVDQGFPDPTKAPVVRKMLRGILELHPAQEKRAKPLQLAALEQTIAHLERERELA 129
           AL QWH+DQGFPDPTKAP+VRK+ RGI  LHPAQEKRAKP Q+  L   I  L++  E A
Sbjct: 64  ALAQWHLDQGFPDPTKAPIVRKVFRGIQTLHPAQEKRAKPFQIEQLRLVINWLDQSIESA 123

Query: 130 RQQARFADLLRHTRDKALLLIGFWRGFRSDEL 161
           R      D+LRHTR+K++LL+GFWRGFR DEL
Sbjct: 124 RLTDSHGDVLRHTRNKSMLLLGFWRGFRGDEL 155


>ref|ZP_07775311.1| phage integrase [Pseudomonas fluorescens WH6]
 gb|EFQ63040.1| phage integrase [Pseudomonas fluorescens WH6]
          Length = 359

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 106/157 (67%), Positives = 123/157 (78%)

Query: 5   PAPLNIDDYLHAATRDNTRRSYRAAVKHFEVEWGGFLPATADSLVRYLAEHAGKLAHNTL 64
           P   ++D YL+AATRDNTRRSYRAA++HFEV WGGFLPAT+DS+ RYL  HAG LA NTL
Sbjct: 48  PPMSDLDRYLNAATRDNTRRSYRAAIEHFEVSWGGFLPATSDSVARYLVAHAGVLAVNTL 107

Query: 65  KQRISALGQWHVDQGFPDPTKAPVVRKMLRGILELHPAQEKRAKPLQLAALEQTIAHLER 124
           K R+SAL QWH  QGFPDPTKAPVVRK+L+GI  +HPAQEK+A+PLQL  LEQ +A LE 
Sbjct: 108 KLRLSALAQWHTSQGFPDPTKAPVVRKVLKGIRAVHPAQEKQAEPLQLKHLEQVVASLEV 167

Query: 125 ERELARQQARFADLLRHTRDKALLLIGFWRGFRSDEL 161
           E   A +      LLR  RD AL+L+GFWRGFRSDEL
Sbjct: 168 EARKAGEAQDQPRLLRAKRDTALILLGFWRGFRSDEL 204


>ref|YP_002872568.1| cointegrase [Pseudomonas fluorescens SBW25]
 emb|CAY49217.1| cointegrase [Pseudomonas fluorescens SBW25]
          Length = 310

 Score =  208 bits (529), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 106/153 (69%), Positives = 122/153 (79%)

Query: 9   NIDDYLHAATRDNTRRSYRAAVKHFEVEWGGFLPATADSLVRYLAEHAGKLAHNTLKQRI 68
           ++D YL+AATRDNTRRSYRAA++HFEV WGGFLPAT+DS+ RYL  HAG LA NTLK R+
Sbjct: 3   DLDRYLNAATRDNTRRSYRAAIEHFEVSWGGFLPATSDSVARYLVAHAGVLAVNTLKLRL 62

Query: 69  SALGQWHVDQGFPDPTKAPVVRKMLRGILELHPAQEKRAKPLQLAALEQTIAHLEREREL 128
           SAL QWH  QGFPDPTKAPVVRK+L+GI  +HPAQEK+A+PLQL  LEQ +A LE E   
Sbjct: 63  SALAQWHTSQGFPDPTKAPVVRKVLKGIRAVHPAQEKQAEPLQLKHLEQVVASLEVEATA 122

Query: 129 ARQQARFADLLRHTRDKALLLIGFWRGFRSDEL 161
           A Q      LLR  RD AL+L+GFWRGFRSDEL
Sbjct: 123 ATQAQDQPRLLRAKRDTALILLGFWRGFRSDEL 155


>ref|YP_001099831.1| hypothetical protein HEAR1539 [Herminiimonas arsenicoxydans]
 emb|CAL61704.1| Putative cointegrate resolution protein S (TnpS protein)
           [Herminiimonas arsenicoxydans]
          Length = 332

 Score =  206 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 101/153 (66%), Positives = 121/153 (79%)

Query: 10  IDDYLHAATRDNTRRSYRAAVKHFEVEWGGFLPATADSLVRYLAEHAGKLAHNTLKQRIS 69
           ID Y+HAATR NTRRSY++A+ H+EVEW G+LPATA+S+ RYLA++A  LA NTL+ R++
Sbjct: 4   IDQYIHAATRQNTRRSYQSAIHHYEVEWRGYLPATAESVARYLADYAETLAINTLRHRLA 63

Query: 70  ALGQWHVDQGFPDPTKAPVVRKMLRGILELHPAQEKRAKPLQLAALEQTIAHLERERELA 129
           ALGQWH+DQGFPDPTKAP+VRK+ RGI +LHP QEKRAKPLQL  LEQ    L+     A
Sbjct: 64  ALGQWHIDQGFPDPTKAPIVRKVFRGIQQLHPVQEKRAKPLQLEQLEQVTTWLDGAIVAA 123

Query: 130 RQQARFADLLRHTRDKALLLIGFWRGFRSDELG 162
             +   A  LRHTRDKAL+LIGFWRGFR DEL 
Sbjct: 124 GAEHDSAAQLRHTRDKALVLIGFWRGFRGDELA 156