BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3231.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775729.1| metal ion ABC transporter periplasmic compon... 447 e-124 ref|YP_001562809.1| NLPA lipoprotein [Delftia acidovorans SPH-1]... 423 e-116 ref|YP_004490185.1| NLPA lipoprotein [Delftia sp. Cs1-4] >gi|333... 421 e-116 ref|YP_004235619.1| NLPA lipoprotein [Acidovorax avenae subsp. a... 406 e-111 ref|ZP_08405099.1| NLPA lipoprotein [Hylemonella gracilis ATCC 1... 399 e-109 >ref|YP_003775729.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] gb|ADJ63821.1| ABC-type metal ion transport system, periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 226/270 (83%), Positives = 246/270 (91%), Gaps = 3/270 (1%) Query: 1 MKLSRLLLLVLTLASLPLAHVAHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEF 60 MK S L+ L LT+ SL A AADKLRIGVVPGAYGDS+AVAAKEAK QGIDVQVVEF Sbjct: 1 MKFSHLVFLSLTVLSL---QAAQAADKLRIGVVPGAYGDSVAVAAKEAKRQGIDVQVVEF 57 Query: 61 TDWTTPNVAVDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQ 120 TDWTTPNVA+DAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGIL+NVGLYSLK+K+ Sbjct: 58 TDWTTPNVALDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILSNVGLYSLKYKSLTA 117 Query: 121 VPQGGKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQ 180 +PQG KVGIANDPVNQGR LLLLQ+VGLIKLKP VGYLGS++DI++NP+KL+FVEVEGPQ Sbjct: 118 LPQGAKVGIANDPVNQGRALLLLQNVGLIKLKPKVGYLGSIDDIIDNPRKLSFVEVEGPQ 177 Query: 181 LVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFI 240 LVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVT+A+RVNDPV+QKFI Sbjct: 178 LVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTRANRVNDPVVQKFI 237 Query: 241 RIYQNSETVKADIHRAFNSDKRLYTLAWQK 270 +IYQNS V+ADI RAFN D RLYTLAW K Sbjct: 238 QIYQNSAAVRADIGRAFNHDSRLYTLAWLK 267 >ref|YP_001562809.1| NLPA lipoprotein [Delftia acidovorans SPH-1] gb|ABX34424.1| NLPA lipoprotein [Delftia acidovorans SPH-1] Length = 268 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 219/246 (89%), Positives = 233/246 (94%) Query: 26 DKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDWTTPNVAVDAGDLDLNYFQHQPF 85 DKLRIGVVPGAY DS+AVAAKEAK+QGIDVQVVEFTDWTTPNVAVD+GDLD+NYFQHQPF Sbjct: 23 DKLRIGVVPGAYADSVAVAAKEAKAQGIDVQVVEFTDWTTPNVAVDSGDLDINYFQHQPF 82 Query: 86 LDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQGGKVGIANDPVNQGRGLLLLQS 145 LDNAIQKNGYKLASAGTGILANVGLYSLKHK+ AQVPQGGKVGIANDPVNQGRGLLLLQ Sbjct: 83 LDNAIQKNGYKLASAGTGILANVGLYSLKHKSIAQVPQGGKVGIANDPVNQGRGLLLLQK 142 Query: 146 VGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQLVRITPDVDLAQGYPHFIVAAKAFD 205 VGLIKLKP VGYLGSL+DIVENPKKL+FVEVEGPQLVRIT DVD+AQGYPHFIVAAKAFD Sbjct: 143 VGLIKLKPGVGYLGSLDDIVENPKKLSFVEVEGPQLVRITGDVDIAQGYPHFIVAAKAFD 202 Query: 206 PSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFIRIYQNSETVKADIHRAFNSDKRLYT 265 PSSGLAYSGIEDARF+IQFV KASR DPV+QKFIRIYQNS+ VKA+ RAF++DKRLY Sbjct: 203 PSSGLAYSGIEDARFSIQFVVKASRTQDPVVQKFIRIYQNSDAVKAEAQRAFSNDKRLYN 262 Query: 266 LAWQKP 271 LAW KP Sbjct: 263 LAWVKP 268 >ref|YP_004490185.1| NLPA lipoprotein [Delftia sp. Cs1-4] gb|AEF91830.1| NLPA lipoprotein [Delftia sp. Cs1-4] Length = 268 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 218/246 (88%), Positives = 232/246 (94%) Query: 26 DKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDWTTPNVAVDAGDLDLNYFQHQPF 85 DKLRIGVVPGAY DS+AVAAKEAK+QGIDVQVVEFTDWTTPNVAVD+GDLD+NYFQHQPF Sbjct: 23 DKLRIGVVPGAYADSVAVAAKEAKAQGIDVQVVEFTDWTTPNVAVDSGDLDINYFQHQPF 82 Query: 86 LDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQGGKVGIANDPVNQGRGLLLLQS 145 LDNAIQKNGYKLASAGTGILANVGLYSLKHK AQVPQGGKVGIANDPVNQGRGLLLLQ Sbjct: 83 LDNAIQKNGYKLASAGTGILANVGLYSLKHKAIAQVPQGGKVGIANDPVNQGRGLLLLQK 142 Query: 146 VGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQLVRITPDVDLAQGYPHFIVAAKAFD 205 VGLIKLKP VGYLGSL+DIVENPKKL+FVEVEGPQLVRIT DVD+AQGYPHFIVAAKAFD Sbjct: 143 VGLIKLKPGVGYLGSLDDIVENPKKLSFVEVEGPQLVRITGDVDIAQGYPHFIVAAKAFD 202 Query: 206 PSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFIRIYQNSETVKADIHRAFNSDKRLYT 265 PSSGLAYSGIEDARF+IQFV KA+R DPV+QKFIRIYQNS+ VKA+ RAF++DKRLY Sbjct: 203 PSSGLAYSGIEDARFSIQFVVKANRTQDPVVQKFIRIYQNSDAVKAEAQRAFSNDKRLYN 262 Query: 266 LAWQKP 271 LAW KP Sbjct: 263 LAWVKP 268 >ref|YP_004235619.1| NLPA lipoprotein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47052.1| NLPA lipoprotein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 276 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 198/258 (76%), Positives = 230/258 (89%), Gaps = 3/258 (1%) Query: 13 LASLPLAHVAHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEFTDWTTPNVAVDA 72 L +LPLA AAD+LRIGVVPGAY DS+ VAAKEA++QG+ V+V+EFTDWTTPNVA++A Sbjct: 21 LGALPLAF---AADRLRIGVVPGAYADSVNVAAKEARAQGLQVEVIEFTDWTTPNVALNA 77 Query: 73 GDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQVPQGGKVGIAND 132 GD+D+NYFQHQPFL NAI+K G++LASAGTGILANVGLYSLKHK VP GGKVG+AND Sbjct: 78 GDIDINYFQHQPFLANAIRKQGFQLASAGTGILANVGLYSLKHKKVEDVPAGGKVGMAND 137 Query: 133 PVNQGRGLLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQLVRITPDVDLAQ 192 PVNQGRGLLLLQ VGL++LKP+VGYLG+L DIV+NPKKL FVEVEGPQLVRITPDVD+AQ Sbjct: 138 PVNQGRGLLLLQKVGLVRLKPDVGYLGTLADIVDNPKKLRFVEVEGPQLVRITPDVDIAQ 197 Query: 193 GYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFIRIYQNSETVKAD 252 GYPHFIVAAKAFDPSSGLAYSGIEDA+FAIQFV + RVNDPV+Q+F+R+YQNS VK++ Sbjct: 198 GYPHFIVAAKAFDPSSGLAYSGIEDAQFAIQFVVRQDRVNDPVVQRFVRLYQNSPAVKSE 257 Query: 253 IHRAFNSDKRLYTLAWQK 270 RAF +D RLYTLAW + Sbjct: 258 TRRAFANDDRLYTLAWAR 275 >ref|ZP_08405099.1| NLPA lipoprotein [Hylemonella gracilis ATCC 19624] gb|EGI77720.1| NLPA lipoprotein [Hylemonella gracilis ATCC 19624] Length = 269 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 199/268 (74%), Positives = 229/268 (85%), Gaps = 3/268 (1%) Query: 1 MKLSRLLLLVLTLASLPLAHVAHAADKLRIGVVPGAYGDSIAVAAKEAKSQGIDVQVVEF 60 MK+ +LL+ L S+ A AADKL+IGV+PG Y D+I KEAK+QGI+V VVEF Sbjct: 1 MKIQQLLIAPLIALSV---LSAQAADKLKIGVLPGVYADAIGAVVKEAKAQGIEVTVVEF 57 Query: 61 TDWTTPNVAVDAGDLDLNYFQHQPFLDNAIQKNGYKLASAGTGILANVGLYSLKHKTFAQ 120 TDWTTPNVAVDAGDLD+N+FQHQPFLDNAI+KNG+KLASAG LANVGLYSLKHK+ Sbjct: 58 TDWTTPNVAVDAGDLDINFFQHQPFLDNAIKKNGFKLASAGVSFLANVGLYSLKHKSLND 117 Query: 121 VPQGGKVGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLNDIVENPKKLNFVEVEGPQ 180 +PQGGKVGIANDPVNQGRGLLLLQ GLIKLKP VG+LG+L+DIVENPKKL+FVEVEGPQ Sbjct: 118 IPQGGKVGIANDPVNQGRGLLLLQKAGLIKLKPGVGFLGTLDDIVENPKKLSFVEVEGPQ 177 Query: 181 LVRITPDVDLAQGYPHFIVAAKAFDPSSGLAYSGIEDARFAIQFVTKASRVNDPVIQKFI 240 LVRIT DVD+AQGYPHFIVA+KAF+PSSGL YSGIEDARFAIQFVTK+ R DPVIQKFI Sbjct: 178 LVRITGDVDIAQGYPHFIVASKAFNPSSGLVYSGIEDARFAIQFVTKSERTKDPVIQKFI 237 Query: 241 RIYQNSETVKADIHRAFNSDKRLYTLAW 268 +++Q S+ VKA IH+AF +D +LYTL W Sbjct: 238 KVFQGSDAVKAAIHKAFANDNKLYTLTW 265