BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3229.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001562807.1| binding-protein-dependent transport systems ... 305 4e-81 ref|YP_004235621.1| binding-protein-dependent transport systems ... 287 1e-75 ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspi... 278 3e-73 ref|ZP_08405095.1| binding-protein-dependent transport systems i... 272 2e-71 ref|ZP_08666361.1| binding-protein-dependent transport systems i... 238 6e-61 >ref|YP_001562807.1| binding-protein-dependent transport systems inner membrane component [Delftia acidovorans SPH-1] ref|YP_004490187.1| ABC transporter integral membrane protein [Delftia sp. Cs1-4] gb|ABX34422.1| binding-protein-dependent transport systems inner membrane component [Delftia acidovorans SPH-1] gb|EEE71494.1| predicted protein [Populus trichocarpa] gb|AEF91832.1| ABC-type transporter, integral membrane subunit [Delftia sp. Cs1-4] Length = 220 Score = 305 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 194/220 (88%), Positives = 206/220 (93%) Query: 3 LELSLSIPIERYGNALVDTLQMVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLG 62 + L+LSIPIERYGNAL DTL MVG+SG +AL AGIPLAVLLIVTAPGGFLASPR HR LG Sbjct: 1 MSLNLSIPIERYGNALADTLMMVGVSGGIALAAGIPLAVLLIVTAPGGFLASPRTHRALG 60 Query: 63 SIINGFRATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDP 122 S+INGFRATPFIVLLVALIP TRLV GTTIGVWAAIVPLAISATPFFARIVEVSLREVDP Sbjct: 61 SVINGFRATPFIVLLVALIPFTRLVTGTTIGVWAAIVPLAISATPFFARIVEVSLREVDP 120 Query: 123 GLVEAAQALGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAI 182 GL+EAAQA+GC+KWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAI Sbjct: 121 GLIEAAQAMGCRKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAI 180 Query: 183 RYGYQRFDTQVMVIVIAVLILLVSVVQRIGDGYVRWLRQR 222 RYGYQRFDTQVM++VIAVLI LV+VVQ +GD YVR LR R Sbjct: 181 RYGYQRFDTQVMLLVIAVLIALVTVVQVLGDRYVRRLRSR 220 >ref|YP_004235621.1| binding-protein-dependent transport systems inner membrane component [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47054.1| binding-protein-dependent transport systems inner membrane component [Acidovorax avenae subsp. avenae ATCC 19860] Length = 220 Score = 287 bits (734), Expect = 1e-75, Method: Composition-based stats. Identities = 188/220 (85%), Positives = 198/220 (90%) Query: 3 LELSLSIPIERYGNALVDTLQMVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLG 62 + LSLSIP ERYG AL DTL MVG+SG A +AGIPLA+LLIVTAPGGFLASPRVHRV G Sbjct: 1 MSLSLSIPAERYGQALADTLLMVGVSGTAAFLAGIPLALLLIVTAPGGFLASPRVHRVAG 60 Query: 63 SIINGFRATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDP 122 S+INGFRATPFIVLLVALIP TRLVAGTTIGVWAAIVPL+ISATPFFARI EVSLREVD Sbjct: 61 SVINGFRATPFIVLLVALIPFTRLVAGTTIGVWAAIVPLSISATPFFARIAEVSLREVDR 120 Query: 123 GLVEAAQALGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAI 182 GLVEAAQA+GC+KW IVRHVYLPEALPGIVGGFTITLVALI +SAMAGAVGAGGLGDLAI Sbjct: 121 GLVEAAQAMGCRKWHIVRHVYLPEALPGIVGGFTITLVALIGASAMAGAVGAGGLGDLAI 180 Query: 183 RYGYQRFDTQVMVIVIAVLILLVSVVQRIGDGYVRWLRQR 222 RYGYQRFDTQVMVIVIAVLI LV+ VQ GD VR LR R Sbjct: 181 RYGYQRFDTQVMVIVIAVLIALVTAVQSAGDFCVRRLRDR 220 >ref|YP_003775731.1| metal ion ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63823.1| ABC-type metal ion transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 199 Score = 278 bits (712), Expect = 3e-73, Method: Composition-based stats. Identities = 182/199 (91%), Positives = 191/199 (95%) Query: 24 MVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLGSIINGFRATPFIVLLVALIPL 83 MV +SGALALVAG+PLAVLLIV+APGGFL PR+HRVLGS+INGFRATPFIVLLVALIPL Sbjct: 1 MVSVSGALALVAGVPLAVLLIVSAPGGFLDWPRLHRVLGSVINGFRATPFIVLLVALIPL 60 Query: 84 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCKKWDIVRHVY 143 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGC+KWDIV HVY Sbjct: 61 TRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQALGCRKWDIVWHVY 120 Query: 144 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAVLIL 203 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIA+LI+ Sbjct: 121 LPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFDTQVMVIVIAMLIV 180 Query: 204 LVSVVQRIGDGYVRWLRQR 222 LVS+VQR GD YVR LR R Sbjct: 181 LVSLVQRTGDSYVRRLRNR 199 >ref|ZP_08405095.1| binding-protein-dependent transport systems inner membrane component [Hylemonella gracilis ATCC 19624] gb|EGI77716.1| binding-protein-dependent transport systems inner membrane component [Hylemonella gracilis ATCC 19624] Length = 220 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 175/220 (79%), Positives = 197/220 (89%) Query: 3 LELSLSIPIERYGNALVDTLQMVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLG 62 + +LSIP ERY A +DTL MVG+S ++A VAG+PLAVLLIVTAP GFL SPRV+RV+G Sbjct: 1 MSWTLSIPFERYLQAFLDTLMMVGVSASIAFVAGVPLAVLLIVTAPSGFLPSPRVNRVVG 60 Query: 63 SIINGFRATPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDP 122 S+INGFRATPFIVLLVALIP TR+VAGTTIGVWAAIVPLAISATPFFARI EVSLREV+ Sbjct: 61 SVINGFRATPFIVLLVALIPFTRVVAGTTIGVWAAIVPLAISATPFFARIAEVSLREVEA 120 Query: 123 GLVEAAQALGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAI 182 GL+EAAQA+GCK+W IVRHV LPEALPGIVGGFTIT+V+LI +SAMAGAVGAGGLGDLAI Sbjct: 121 GLIEAAQAMGCKRWHIVRHVLLPEALPGIVGGFTITVVSLIGASAMAGAVGAGGLGDLAI 180 Query: 183 RYGYQRFDTQVMVIVIAVLILLVSVVQRIGDGYVRWLRQR 222 RYGYQRFDTQVMV+VIAVLI LV++VQ GD RWLR+R Sbjct: 181 RYGYQRFDTQVMVLVIAVLIALVTLVQFAGDRLARWLRER 220 >ref|ZP_08666361.1| binding-protein-dependent transport systems inner membrane component [Paracoccus sp. TRP] Length = 218 Score = 238 bits (606), Expect = 6e-61, Method: Composition-based stats. Identities = 150/212 (70%), Positives = 182/212 (85%) Query: 11 IERYGNALVDTLQMVGISGALALVAGIPLAVLLIVTAPGGFLASPRVHRVLGSIINGFRA 70 ++R AL DT+ MV +S +A++AGIPLAV L+ + G +PR++R++G+++NGFRA Sbjct: 7 VDRLQQALWDTVLMVSVSAGIAVLAGIPLAVFLVTSGSDGIFPAPRLNRIIGTVVNGFRA 66 Query: 71 TPFIVLLVALIPLTRLVAGTTIGVWAAIVPLAISATPFFARIVEVSLREVDPGLVEAAQA 130 PFIVLLVALIP TRLVAGTTIGVWAAIVPL++SATPFFARI EVSLREVDPGLVEAAQ+ Sbjct: 67 VPFIVLLVALIPFTRLVAGTTIGVWAAIVPLSVSATPFFARIAEVSLREVDPGLVEAAQS 126 Query: 131 LGCKKWDIVRHVYLPEALPGIVGGFTITLVALISSSAMAGAVGAGGLGDLAIRYGYQRFD 190 +GC++WDIVRHV LPEALPGI GGFTIT+V++I +SAMAGAVGAGGLGD+AIRYGYQRFD Sbjct: 127 IGCRRWDIVRHVLLPEALPGIAGGFTITVVSMIGASAMAGAVGAGGLGDVAIRYGYQRFD 186 Query: 191 TQVMVIVIAVLILLVSVVQRIGDGYVRWLRQR 222 T VM++VIA+LILLVS VQ GD VR L+ R Sbjct: 187 TTVMLVVIAILILLVSAVQFSGDHAVRRLKAR 218