BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3228.p (373 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775817.1| trans-aconitate methyltransferase [Herbaspir... 473 e-131 ref|YP_004752616.1| trans-aconitate 2-methyltransferase [Collimo... 303 2e-80 ref|ZP_06897797.1| trans-aconitate 2-methyltransferase [Roseomon... 245 8e-63 emb|CAM76114.1| Trans-aconitate 2-methyltransferase [Magnetospir... 226 4e-57 ref|YP_001619491.1| hypothetical protein sce8839 [Sorangium cell... 222 8e-56 >ref|YP_003775817.1| trans-aconitate methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63909.1| trans-aconitate methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 241/267 (90%), Positives = 250/267 (93%) Query: 107 MQTSPESMQAQVQWDVSQYLRFGGERLRPALDLMLHLPTQNPARILDLGCGTGNLTALLQ 166 MQ S + MQ QVQWDVSQYLRFGGERLRPALDLMLHLPTQ PARILDLGCG GNL+A+LQ Sbjct: 1 MQDSQDIMQPQVQWDVSQYLRFGGERLRPALDLMLHLPTQTPARILDLGCGAGNLSAILQ 60 Query: 167 QRWPRAEVLGVDGSDDMLAKARLNVAQARFVAADLNHWVPEHKLDLIYTNATLQWLPDHA 226 QRWP AEVLGVDGS+DMLAKAR+NV Q RF+AADLNHW P HKLDLIYTNATLQWLPDHA Sbjct: 61 QRWPTAEVLGVDGSEDMLAKARMNVPQGRFIAADLNHWTPAHKLDLIYTNATLQWLPDHA 120 Query: 227 QLFPRLLSFLNPGGCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEAGRY 286 QLFPRLLSFLNPGGCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLE G Y Sbjct: 121 QLFPRLLSFLNPGGCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEMGGY 180 Query: 287 YDLLRPRVATLDIWQTSYLHILTGADPVLEWASGSSLRPYLEKLEAEQLQAFRTEYARRM 346 YDLLRPRVA+LDIWQT+YLHILTGADPVLEWASGSSLRPYLEKL EQLQAFR +YARRM Sbjct: 181 YDLLRPRVASLDIWQTTYLHILTGADPVLEWASGSSLRPYLEKLAGEQLQAFRADYARRM 240 Query: 347 QQAYPPSADGSTLLPFQRMFIVASLPG 373 Q AYPPSADGSTLLPFQRMFIVASLPG Sbjct: 241 QLAYPPSADGSTLLPFQRMFIVASLPG 267 >ref|YP_004752616.1| trans-aconitate 2-methyltransferase [Collimonas fungivorans Ter331] gb|AEK61793.1| Trans-aconitate 2-methyltransferase [Collimonas fungivorans Ter331] Length = 263 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 153/252 (60%), Positives = 189/252 (75%) Query: 120 WDVSQYLRFGGERLRPALDLMLHLPTQNPARILDLGCGTGNLTALLQQRWPRAEVLGVDG 179 WD QY+ FG ERLRPALDL+ ++P Q P R++DLGCGTGN++ALL+ RWP A+VLGVD Sbjct: 12 WDAKQYMHFGNERLRPALDLLAYVPEQEPQRVVDLGCGTGNISALLKARWPAADVLGVDS 71 Query: 180 SDDMLAKARLNVAQARFVAADLNHWVPEHKLDLIYTNATLQWLPDHAQLFPRLLSFLNPG 239 S++MLA A V + RF ADL HW PE LD+IY+NATLQWLPDH LFPR LSFL G Sbjct: 72 SENMLAAAAAAVPECRFERADLAHWQPEGLLDVIYSNATLQWLPDHPALFPRFLSFLRGG 131 Query: 240 GCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEAGRYYDLLRPRVATLDI 299 LAVQMP MHDAPLR+ Q ELARSPA+A L V ++ ++L A YYDLLR R + LDI Sbjct: 132 AWLAVQMPAMHDAPLRKMQAELARSPAFAPHLRGVPQQPSILTAENYYDLLRSRASKLDI 191 Query: 300 WQTSYLHILTGADPVLEWASGSSLRPYLEKLEAEQLQAFRTEYARRMQQAYPPSADGSTL 359 W+T+YLH L G + V EWA+G+SLRPYLE L ++ AFR YA M++AYP +G TL Sbjct: 192 WETTYLHTLRGENAVAEWAAGTSLRPYLEALPEDKRAAFRAAYAETMREAYPQRENGVTL 251 Query: 360 LPFQRMFIVASL 371 LPF+R+FIVA++ Sbjct: 252 LPFKRLFIVANV 263 >ref|ZP_06897797.1| trans-aconitate 2-methyltransferase [Roseomonas cervicalis ATCC 49957] gb|EFH10488.1| trans-aconitate 2-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 256 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 137/256 (53%), Positives = 166/256 (64%), Gaps = 2/256 (0%) Query: 114 MQAQVQWDVSQYLRFGGERLRPALDLMLHLPTQNPARILDLGCGTGNLTALLQQRWPRAE 173 M W+ QYLRFG ERLRPA+DL+ L R+ DLGCG GN LL R+P A+ Sbjct: 1 MSGNPSWNPEQYLRFGDERLRPAIDLIARLTLPAARRVADLGCGAGNALPLLAARFPGAQ 60 Query: 174 VLGVDGSDDMLAKARLNVAQARFVAADLNHWVPEHKLDLIYTNATLQWLPDHAQLFPRLL 233 VLGVDGS MLAKAR N + + ADL W P+ DLI++NA L WLP H LFPRLL Sbjct: 61 VLGVDGSAAMLAKARENGFETQ--QADLAKWAPDAPFDLIFSNAALHWLPAHETLFPRLL 118 Query: 234 SFLNPGGCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEAGRYYDLLRPR 293 L PGG LAVQ+P MH APLR Q LA S +A LG++ +LEAG YYDLLRP Sbjct: 119 RALAPGGMLAVQIPAMHAAPLRALQDGLAASSRWATQLGQIRSAPPILEAGAYYDLLRPL 178 Query: 294 VATLDIWQTSYLHILTGADPVLEWASGSSLRPYLEKLEAEQLQAFRTEYARRMQQAYPPS 353 +LD+W T YLH+L G +PV++WA GSSLRPYL+ L + AF +YA ++ YP Sbjct: 179 TRSLDLWFTEYLHVLRGEEPVVQWAMGSSLRPYLDALPEAERPAFLHDYAEALRPHYPRQ 238 Query: 354 ADGSTLLPFQRMFIVA 369 ADGS LLPF+R F+ A Sbjct: 239 ADGSVLLPFRRFFLTA 254 >emb|CAM76114.1| Trans-aconitate 2-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 254 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 120/252 (47%), Positives = 155/252 (61%) Query: 120 WDVSQYLRFGGERLRPALDLMLHLPTQNPARILDLGCGTGNLTALLQQRWPRAEVLGVDG 179 WD Y F RLRPALDL+ + +NPAR++DLG GTGN+T LL RWP+A+V G+D Sbjct: 3 WDPKVYAAFATPRLRPALDLLARIEVENPARVVDLGSGTGNVTRLLAVRWPQAQVAGIDS 62 Query: 180 SDDMLAKARLNVAQARFVAADLNHWVPEHKLDLIYTNATLQWLPDHAQLFPRLLSFLNPG 239 S +MLA A + + AD W P +D++++NA L WL DH LFPRL F+ PG Sbjct: 63 SAEMLAAAAEQPSAISWSQADAGTWAPAAPVDVLFSNAALHWLDDHENLFPRLAGFIAPG 122 Query: 240 GCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEAGRYYDLLRPRVATLDI 299 G LAVQMP H A E A + +A VL ++ R V YYDLL P+ LDI Sbjct: 123 GTLAVQMPHNHYAASHGVMAEAAEAGPWATVLRPLARRFPVDSPDFYYDLLAPKARRLDI 182 Query: 300 WQTSYLHILTGADPVLEWASGSSLRPYLEKLEAEQLQAFRTEYARRMQQAYPPSADGSTL 359 W+T YLH+L G DPV++W G++LRP L+ L+A F EY RR+ AYP ADG TL Sbjct: 183 WETEYLHVLDGDDPVVKWTMGTALRPLLDALDAPWRAGFLAEYTRRIASAYPRRADGKTL 242 Query: 360 LPFQRMFIVASL 371 PF+R+F+VA Sbjct: 243 FPFRRLFMVADF 254 >ref|YP_001619491.1| hypothetical protein sce8839 [Sorangium cellulosum 'So ce 56'] emb|CAN99011.1| tam2 [Sorangium cellulosum 'So ce 56'] Length = 256 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 119/251 (47%), Positives = 154/251 (61%) Query: 120 WDVSQYLRFGGERLRPALDLMLHLPTQNPARILDLGCGTGNLTALLQQRWPRAEVLGVDG 179 WD +QYL+F +R RPA+DL+ + P I+DLGCG GN+T L+ QR+P ++GVD Sbjct: 4 WDPAQYLKFEDQRARPAIDLLGRVDLTAPGDIVDLGCGAGNITRLVAQRFPGRGIVGVDS 63 Query: 180 SDDMLAKARLNVAQARFVAADLNHWVPEHKLDLIYTNATLQWLPDHAQLFPRLLSFLNPG 239 S +MLA+AR + ARFV D+ P LI++NA L WL DH LFP LL L G Sbjct: 64 SPEMLAQARAALPGARFVEGDIARVAPSAPPALIFSNAALHWLDDHQALFPALLGRLAAG 123 Query: 240 GCLAVQMPVMHDAPLRRAQVELARSPAYADVLGEVSERRNVLEAGRYYDLLRPRVATLDI 299 G LAVQMP H AP A VE +R P + D L V V YY++L P A LDI Sbjct: 124 GVLAVQMPRNHGAPSHAAMVEASRLPRFRDKLAAVVRESPVAAPAAYYEMLAPHAARLDI 183 Query: 300 WQTSYLHILTGADPVLEWASGSSLRPYLEKLEAEQLQAFRTEYARRMQQAYPPSADGSTL 359 W+T YLH+L GA+PV+EW G++LRP L L+ + F EY R+ AYP +ADG T Sbjct: 184 WETEYLHVLEGANPVVEWTKGTALRPLLAALDEHERAEFLEEYGGRVAAAYPKAADGKTP 243 Query: 360 LPFQRMFIVAS 370 PF+R F+VA+ Sbjct: 244 FPFRRSFLVAT 254