BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3227.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775816.1| LysR family transcription regulator [Herbasp... 452 e-125 ref|YP_001895632.1| LysR family transcriptional regulator [Burkh... 439 e-121 ref|ZP_03268722.1| transcriptional regulator, LysR family [Burkh... 437 e-120 ref|YP_003605125.1| LysR family transcriptional regulator [Burkh... 435 e-120 ref|YP_777051.1| LysR family transcriptional regulator [Burkhold... 385 e-105 >ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] gb|ADJ63908.1| transcription regulator, LysR family protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 252/297 (84%), Positives = 268/297 (90%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTL+ERTTRS+ALT Sbjct: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 EIG+DFLPQARRLL EL GALVEIRETG+ARRGDV IACVPTVGVQYLPRILQAYSARYP Sbjct: 61 EIGRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 HNRIKILDHASSAVA+AVLRRE EFGI++A EHHPEL SV LT DRYVLIC HPLA+R Sbjct: 121 HNRIKILDHASSAVAEAVLRREVEFGIHIAGEHHPELISVALTEDRYVLICPKDHPLARR 180 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 RR W QL+ YPLIFAGEVS NR LLDP L AN ALRSFYEVQRSSTA+GLVAQGVG+A Sbjct: 181 RRIAWRQLQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVGVA 240 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILTKESKN 297 VVP LA+QEGAYP VR I+LV+PVVSRSLVLITRK+AHLSPAAQALYDMI E + Sbjct: 241 VVPKLAIQEGAYPTVRVIELVDPVVSRSLVLITRKAAHLSPAAQALYDMIREHEGDD 297 >ref|YP_001895632.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16408.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 298 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 234/295 (79%), Positives = 258/295 (87%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MKID LGVQAFVAIAD GSFQ AA +LHVTQTA+T RLRKLE +LGVTL+ERTTRS+ LT Sbjct: 1 MKIDTLGVQAFVAIADRGSFQSAADSLHVTQTAITQRLRKLETYLGVTLIERTTRSMTLT 60 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 EIGQ FLPQARRLL EL ALVEIRETG+ARRGDV IACVPTVGVQYLPRILQAYSARYP Sbjct: 61 EIGQGFLPQARRLLGELADALVEIRETGVARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 HNRI+ILDHASSAV AVLRRE EFGIN+A EHHP+LASVPLT DRYVLICH HPLAKR Sbjct: 121 HNRIRILDHASSAVEAAVLRREVEFGINIAGEHHPDLASVPLTEDRYVLICHEDHPLAKR 180 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 RR W QL+ YPLIFAGEVSGNR LLD L+ ++LALRSFYEVQRSSTA+GLVAQGVG A Sbjct: 181 RRIAWQQLQSYPLIFAGEVSGNRALLDVALEPSQLALRSFYEVQRSSTAVGLVAQGVGAA 240 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILTKES 295 VVP LA+Q+GAYP VR ++L +P VSR+LVL+ RK+A LSPAAQALYDMIL + + Sbjct: 241 VVPALALQKGAYPTVRIVELTQPAVSRTLVLVARKTAQLSPAAQALYDMILEQAT 295 >ref|ZP_03268722.1| transcriptional regulator, LysR family [Burkholderia sp. H160] gb|EDZ99717.1| transcriptional regulator, LysR family [Burkholderia sp. H160] Length = 299 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 233/290 (80%), Positives = 259/290 (89%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MKID LGVQAFVAIAD GSFQGAA +LHVTQTA+T RLRKLE +LGVTL+ERTTRS+ALT Sbjct: 1 MKIDTLGVQAFVAIADRGSFQGAADSLHVTQTAITQRLRKLETYLGVTLIERTTRSMALT 60 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 EIG+ FLPQARRLL EL ALVEIRETG+ARRGDV IACVPTVGVQYLPRILQAYSARYP Sbjct: 61 EIGRHFLPQARRLLGELADALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYP 120 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 HNRIKILDHAS+AV +AVLRRE EFGIN+AREHHP+LA+VPLT DRYVLICH HPLAKR Sbjct: 121 HNRIKILDHASAAVEEAVLRREVEFGINIAREHHPDLATVPLTKDRYVLICHEDHPLAKR 180 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 RR W QL+ +PLIFAGEVSGNR LLD L+++ LALRSFYEVQRSSTA+GLVAQ VG A Sbjct: 181 RRIAWRQLQAFPLIFAGEVSGNRALLDVALESSGLALRSFYEVQRSSTALGLVAQRVGAA 240 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMI 290 VVP LA+Q+GAYP VR ++L++P VSR+LVL+ RKSA LSPAAQALYDMI Sbjct: 241 VVPALALQKGAYPTVRTVELMQPAVSRTLVLVARKSAQLSPAAQALYDMI 290 >ref|YP_003605125.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG15614.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1002] Length = 299 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 230/290 (79%), Positives = 258/290 (88%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MKID LGVQAFVAIAD GSFQ AA +LHVTQTA+T RLRKLE +LGVTL+ERTTRS+ALT Sbjct: 1 MKIDTLGVQAFVAIADRGSFQSAADSLHVTQTAITQRLRKLETYLGVTLIERTTRSMALT 60 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 +IG++FLPQARRLL EL ALVEIRETG+ARRGDV IACVPTVGVQYLPRILQAYSA YP Sbjct: 61 DIGRNFLPQARRLLGELADALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSAHYP 120 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 HNRIKILDHAS+AV +AVLRRE EFGIN+AREHHP+LASVPLT DRYVLICH HPLAKR Sbjct: 121 HNRIKILDHASAAVEEAVLRREVEFGINIAREHHPDLASVPLTEDRYVLICHEDHPLAKR 180 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 RR W QL+ +PLIFAGEVSGNR LLD L+++ LALRSFYEVQRSSTA+GLVAQ VG+A Sbjct: 181 RRIAWRQLQAFPLIFAGEVSGNRALLDVALESSELALRSFYEVQRSSTALGLVAQRVGVA 240 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMI 290 VVP LA+Q+GAYP VR ++L +P VSR+LVL+ RK+A LSPAAQALYDMI Sbjct: 241 VVPALALQKGAYPTVRTVELTQPTVSRTLVLVARKTAQLSPAAQALYDMI 290 >ref|YP_777051.1| LysR family transcriptional regulator [Burkholderia ambifaria AMMD] ref|ZP_02888139.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] gb|ABI90717.1| transcriptional regulator, LysR family [Burkholderia ambifaria AMMD] gb|EDT06449.1| transcriptional regulator, LysR family [Burkholderia ambifaria IOP40-10] Length = 298 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 211/295 (71%), Positives = 246/295 (83%) Query: 1 MKIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLMERTTRSLALT 60 MKID LGVQAFVAIAD GSF+ AA LHVTQTA+T RLRKLE FLGV L+ERTTR LT Sbjct: 1 MKIDTLGVQAFVAIADGGSFRQAADTLHVTQTAITQRLRKLESFLGVALVERTTRRTTLT 60 Query: 61 EIGQDFLPQARRLLDELEGALVEIRETGMARRGDVCIACVPTVGVQYLPRILQAYSARYP 120 EIG+ FLPQARRLL+EL AL EIRETG+++RGDV IACVPTVGVQYLPRIL+A+S P Sbjct: 61 EIGRRFLPQARRLLNELSDALTEIRETGLSQRGDVTIACVPTVGVQYLPRILRAFSGHRP 120 Query: 121 HNRIKILDHASSAVADAVLRREAEFGINMAREHHPELASVPLTTDRYVLICHHTHPLAKR 180 H+R+KILDHAS++V AVLRREAEFGI++A + HPEL SVPLT D YVL+C HPLAKR Sbjct: 121 HDRVKILDHASASVLQAVLRREAEFGISIAGDQHPELVSVPLTHDPYVLVCRDDHPLAKR 180 Query: 181 RRATWAQLKPYPLIFAGEVSGNRTLLDPVLDANRLALRSFYEVQRSSTAMGLVAQGVGIA 240 RR WA L+P+PLIFAGEVSGNR LLD L + ++L SFYEVQRSSTA+GLVA+G+G A Sbjct: 181 RRIRWAALQPHPLIFAGEVSGNRGLLDGALKTSGVSLHSFYEVQRSSTALGLVAEGLGAA 240 Query: 241 VVPGLAVQEGAYPDVRRIQLVEPVVSRSLVLITRKSAHLSPAAQALYDMILTKES 295 VVP LAVQ+ AYP +R I+LVEP VSR+LVL+ RK+A LSPAAQALYDMI+ + + Sbjct: 241 VVPKLAVQKNAYPMIRTIELVEPSVSRTLVLVKRKAAQLSPAAQALYDMIVERAT 295