BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3223.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003261413.1| major facilitator superfamily MFS_1 [Pectoba... 245 1e-62 ref|YP_003019452.1| major facilitator superfamily protein [Pecto... 243 4e-62 ref|YP_052198.1| transporter [Pectobacterium atrosepticum SCRI10... 243 6e-62 ref|ZP_03833071.1| transporter [Pectobacterium carotovorum subsp... 241 1e-61 gb|EFV84639.1| hypothetical protein HMPREF0005_03924 [Achromobac... 233 6e-59 >ref|YP_003261413.1| major facilitator superfamily MFS_1 [Pectobacterium wasabiae WPP163] gb|ACX89806.1| major facilitator superfamily MFS_1 [Pectobacterium wasabiae WPP163] Length = 417 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 159/385 (41%), Positives = 230/385 (59%), Gaps = 11/385 (2%) Query: 6 AVALRYLMAIQLLSMGAMEMSGPFWPLHLRELAPMSAATLAWVSMAVYAGPLLMTMLTAP 65 A + ++ +QL++MGAMEMSGPFWPLHL ++ S A L+ +AVY GP+L MLT+ Sbjct: 8 AFIIHFMFVVQLVAMGAMEMSGPFWPLHLESMS--SGAELSIAGIAVYVGPMLGIMLTSA 65 Query: 66 WWGRLGDRTGHKPMVVRALLALAVSQLMAAWTDSVTVVLLARLIQGALGGFIATAQAYGA 125 +WGR+GDR G+K M++RAL LA++QL AW + + +++ R IQGA G+IA AQAYG Sbjct: 66 FWGRMGDRLGNKAMMIRALFGLALTQLGLAWANDIWTIVVLRFIQGACAGYIAPAQAYGV 125 Query: 126 GLATPAQRSSLMARLQVATAMGSALGPWLGGILFDLWGFWIVNLTTALVCVLCALLAAVA 185 + +P QR+ L A LQV+T +GS LG +GG++ D F+ +NL+ A++C LC + A+ Sbjct: 126 AVVSPLQRTRLFAWLQVSTNVGSLLGAIVGGLILDYLNFFWINLSAAILCALCGITVALF 185 Query: 186 LPFVKPAAPTDRQRASSKPVAPTAAERP---ALQAFQGLLLGILLVQAGKIMPQAFFAVY 242 LP V P PT A S V A R AL LLL L+ +++PQ F++Y Sbjct: 186 LPHVAPMVPT----APSADVQAKEAPRKRLWALSPIPALLLISGLLLTSRMIPQTPFSLY 241 Query: 243 ADQVLHANASFTGLCYGATALGLCIAAPLWARAFAALAPEQVLQRVKWITLACA-ATLAL 301 D + GLCYG A G+ ++A LWAR F L+ Q L R+ + LACA TL Sbjct: 242 MDGFFQVDKWVIGLCYGLQATGVIVSASLWARYFENLSLPQTLSRLCVVMLACAIVTLTA 301 Query: 302 QSMSHVPAWFVAARLLWGVFLGALLPVFYTLLSRQADGHRQGWVLGAGNSAAKAGALLGT 361 +M ++ A F+ LWGV LGA PV L+SR A +QG++LG S ++ ++LG Sbjct: 302 ATMLNI-AIFIPLYFLWGVLLGATTPVLMALISRAAGAGQQGYILGVAQSVSQFASILGI 360 Query: 362 AAGALAMGWLPISEVFWPNAAVYLI 386 + G L + + +F+ A YL+ Sbjct: 361 SLGGLVLYSPGLRSLFFCVGAAYLV 385 >ref|YP_003019452.1| major facilitator superfamily protein [Pectobacterium carotovorum subsp. carotovorum PC1] gb|ACT14916.1| major facilitator superfamily MFS_1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 416 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 154/381 (40%), Positives = 225/381 (59%), Gaps = 3/381 (0%) Query: 6 AVALRYLMAIQLLSMGAMEMSGPFWPLHLRELAPMSAATLAWVSMAVYAGPLLMTMLTAP 65 A + ++ +QL++MGAMEMSGPFWPLHL ++ S A L+ +AVY GP+L MLT+ Sbjct: 8 AFIIHFMFVVQLVAMGAMEMSGPFWPLHLESMS--SGAELSIAGIAVYIGPMLGIMLTSA 65 Query: 66 WWGRLGDRTGHKPMVVRALLALAVSQLMAAWTDSVTVVLLARLIQGALGGFIATAQAYGA 125 +WGR+GDR G+K M++RAL LA++QL AW + + ++ R IQGA G+IA AQAYG Sbjct: 66 FWGRMGDRLGNKAMMIRALFGLALTQLGLAWANDIWTIVALRFIQGACAGYIAPAQAYGV 125 Query: 126 GLATPAQRSSLMARLQVATAMGSALGPWLGGILFDLWGFWIVNLTTALVCVLCALLAAVA 185 + +P QR+ L A LQV+T +GS LG +GG++ D F+ +NL+ A++C LC + A+ Sbjct: 126 AVVSPLQRTRLFAWLQVSTNVGSLLGAIVGGLILDYLNFFWINLSAAILCALCGITVALF 185 Query: 186 LPFVKPAAPTDRQRASSKPVAPTAAERPALQAFQGLLLGILLVQAGKIMPQAFFAVYADQ 245 LP V P P + + P + AL GLLL L+ A +++PQ F++Y D Sbjct: 186 LPHVAPDVPAVPPADAQEKSTPR-SRLWALSPISGLLLISGLLLASRMIPQTPFSLYMDG 244 Query: 246 VLHANASFTGLCYGATALGLCIAAPLWARAFAALAPEQVLQRVKWITLACAATLALQSMS 305 + + GLCYG A G+ ++A LWAR F L+ Q L R+ + LACA + Sbjct: 245 IFQVDKWIIGLCYGLQATGVIVSASLWARYFENLSLSQTLSRLCVVMLACAIVTLTAATI 304 Query: 306 HVPAWFVAARLLWGVFLGALLPVFYTLLSRQADGHRQGWVLGAGNSAAKAGALLGTAAGA 365 A F+ LWGV LGA PV L+SR A +QG++LG S ++ ++LG A G Sbjct: 305 LNIAIFIPLYFLWGVLLGATTPVLMALISRAAGAGQQGYILGVAQSVSQFASILGIALGG 364 Query: 366 LAMGWLPISEVFWPNAAVYLI 386 L + + +F+ A YL+ Sbjct: 365 LVLYSPGLRSLFFCVGAAYLV 385 >ref|YP_052198.1| transporter [Pectobacterium atrosepticum SCRI1043] emb|CAG77008.1| probable transporter [Pectobacterium atrosepticum SCRI1043] Length = 416 Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 160/396 (40%), Positives = 231/396 (58%), Gaps = 11/396 (2%) Query: 6 AVALRYLMAIQLLSMGAMEMSGPFWPLHLRELAPMSAATLAWVSMAVYAGPLLMTMLTAP 65 A + ++ +QL++MGAMEMSGPFWPLHL ++ S A L+ +AVY GP+L MLT+ Sbjct: 8 AFIIHFMFVVQLVAMGAMEMSGPFWPLHLESMS--SGAELSIAGIAVYIGPMLGIMLTSA 65 Query: 66 WWGRLGDRTGHKPMVVRALLALAVSQLMAAWTDSVTVVLLARLIQGALGGFIATAQAYGA 125 +WGR+GDR G+K M++RAL LA++QL AW + + ++ R IQGA G+IA AQAYG Sbjct: 66 FWGRMGDRLGNKAMMIRALFGLALTQLGLAWANDIWTIIALRFIQGACAGYIAPAQAYGV 125 Query: 126 GLATPAQRSSLMARLQVATAMGSALGPWLGGILFDLWGFWIVNLTTALVCVLCALLAAVA 185 + +P QR+ L A LQV+T +GS LG +GG++ D F+ +NL+ A++C LC + A+ Sbjct: 126 AVVSPLQRTRLFAWLQVSTNVGSLLGAIVGGLILDYLNFFWINLSAAILCALCGITVALF 185 Query: 186 LPFVKP---AAPTDRQRASSKPVAPTAAERPALQAFQGLLLGILLVQAGKIMPQAFFAVY 242 LP V P A P + +A P AL GLLL L+ +++PQ F++Y Sbjct: 186 LPHVTPVISAVPNENAQAKDIP----RKRLWALSPIPGLLLISGLLLTSRMIPQTPFSLY 241 Query: 243 ADQVLHANASFTGLCYGATALGLCIAAPLWARAFAALAPEQVLQRVKWITLACA-ATLAL 301 D + GLCYG A G+ ++A LWAR F L+ Q L R+ + LACA TL Sbjct: 242 MDGFFQVDKWVIGLCYGLQATGVIVSASLWARYFENLSLSQTLSRLCVVMLACAIVTLTA 301 Query: 302 QSMSHVPAWFVAARLLWGVFLGALLPVFYTLLSRQADGHRQGWVLGAGNSAAKAGALLGT 361 +M +V A F+ LWGV LGA PV L+SR A +QG++LG S ++ ++LG Sbjct: 302 ATMLNV-AIFIPLYFLWGVLLGATTPVLMALISRAAGAGQQGYILGVAQSVSQFASILGI 360 Query: 362 AAGALAMGWLPISEVFWPNAAVYLIVAAALHGLQRR 397 + G L + + +F+ YL+ L RR Sbjct: 361 SLGGLVLYSPGLRSLFFCVGVAYLVTFLVALMLLRR 396 >ref|ZP_03833071.1| transporter [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 416 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 161/396 (40%), Positives = 234/396 (59%), Gaps = 11/396 (2%) Query: 6 AVALRYLMAIQLLSMGAMEMSGPFWPLHLRELAPMSAATLAWVSMAVYAGPLLMTMLTAP 65 A + ++ +QL++MGAMEMSGPFWPLHL ++ S A L+ +AVY GP+L MLT+ Sbjct: 8 AFIIHFMFVVQLVAMGAMEMSGPFWPLHLESMS--SGAELSIAGIAVYVGPMLGIMLTSA 65 Query: 66 WWGRLGDRTGHKPMVVRALLALAVSQLMAAWTDSVTVVLLARLIQGALGGFIATAQAYGA 125 +WGR+GDR G+K M++RAL LA++QL AW + + ++ R IQGA G+IA AQAYG Sbjct: 66 FWGRMGDRLGNKAMMIRALFGLALTQLGLAWANDIWTIVALRFIQGACAGYIAPAQAYGV 125 Query: 126 GLATPAQRSSLMARLQVATAMGSALGPWLGGILFDLWGFWIVNLTTALVCVLCALLAAVA 185 + +P QR+ L A LQV+T +GS LG +GG++ D F+ +NL+ A++C LC + A+ Sbjct: 126 AVVSPLQRTRLFAWLQVSTNVGSLLGAIVGGLILDYLNFFWINLSAAILCALCGITVALF 185 Query: 186 LPFV---KPAAPTDRQRASSKPVAPTAAERPALQAFQGLLLGILLVQAGKIMPQAFFAVY 242 LP V PAAP+ +A P AL GLLL L+ +++PQ F++Y Sbjct: 186 LPHVVPEVPAAPSADAQAKDIP----RKRLWALSPIPGLLLISGLLLTSRMIPQTPFSLY 241 Query: 243 ADQVLHANASFTGLCYGATALGLCIAAPLWARAFAALAPEQVLQRVKWITLACA-ATLAL 301 D + GLCYG A G+ ++A LWAR F L+ Q L R+ + LACA TLA Sbjct: 242 MDGFFQVDKWIIGLCYGLQATGVIVSASLWARYFENLSLSQTLSRLCVVMLACAIVTLAA 301 Query: 302 QSMSHVPAWFVAARLLWGVFLGALLPVFYTLLSRQADGHRQGWVLGAGNSAAKAGALLGT 361 ++ ++ A F+ LWGV LGA PV L+SR A +QG++LG S ++ ++LG Sbjct: 302 ATILNI-AIFIPLYFLWGVLLGATTPVLMALISRAAGAGQQGYILGVAQSVSQFASILGI 360 Query: 362 AAGALAMGWLPISEVFWPNAAVYLIVAAALHGLQRR 397 + G L + + +F+ A YL+ L RR Sbjct: 361 SLGGLVLYSPGLRSLFFCVGAAYLVTFLVSLMLLRR 396 >gb|EFV84639.1| hypothetical protein HMPREF0005_03924 [Achromobacter xylosoxidans C54] Length = 415 Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats. Identities = 167/390 (42%), Positives = 235/390 (60%), Gaps = 17/390 (4%) Query: 12 LMAIQLLSMGAMEMSGPFWPLHLRELAPMSAA-TLAWVSMAVYAGPLLMTMLTAPWWGRL 70 L+ IQ +MGAMEMSGPFWPL LR L P L+W++ +Y GP L ++ P+W L Sbjct: 11 LVLIQAFAMGAMEMSGPFWPLRLRALLPPDRQDQLSWLAALIYIGPALTAIIATPFWSAL 70 Query: 71 GDRTGHKPMVVRALLALAVSQLMAAWTDSVTVVLLARLIQGALGGFIATAQAYGAGLATP 130 G R GH+PM++RALLAL V Q +AA T +V +++ R++QGAL GFIA AQAY ++ Sbjct: 71 GTRRGHRPMLIRALLALGVCQWLAAITANVWLLIGIRVLQGALAGFIAAAQAYATTGSSG 130 Query: 131 AQRSSLMARLQVATAMGSALGPWLGGILFDLWGFWIVNLTTALVCVLCALLAAVALPFVK 190 A R ++ARLQ ATA+GS LGP GG+L DL+GF + L L+C++C ++ ++LP Sbjct: 131 ANRGQILARLQSATAIGSLLGPVAGGLLMDLYGFAWICLIAGLICLIC-VIPVLSLP--- 186 Query: 191 PAAPTDRQRASSKPVAPTAAERPALQAFQGLLLG----ILLVQAGKIMPQAFFAVYADQV 246 + + +PVAP LL I L+QA K+MPQ FFA+Y ++V Sbjct: 187 --------KDTPEPVAPLGTGTTGHTTAHTWLLAPLVVITLIQAAKMMPQPFFALYLNEV 238 Query: 247 LHANASFTGLCYGATALGLCIAAPLWARAFAALAPEQVLQRVKWITLACAATLALQSMSH 306 LHA A +G Y A+AL L ++AP WAR ++ + ++ + A A TL L +++H Sbjct: 239 LHAPAWLSGASYAASALTLALSAPWWARLCTPQPVQRGWRCLEVASWASALTLCLMALAH 298 Query: 307 VPAWFVAARLLWGVFLGALLPVFYTLLSRQADGHRQGWVLGAGNSAAKAGALLGTAAGAL 366 F+A RLLWG++ GALLP+ Y L+ A + LG GNSAAKAGAL G A GA Sbjct: 299 DTITFIATRLLWGLWQGALLPLAYVLIGHTAPNAYRAIGLGLGNSAAKAGALAGFALGAG 358 Query: 367 AMGWLPISEVFWPNAAVYLIVAAALHGLQR 396 AM W + FW A +Y++ A + L++ Sbjct: 359 AMSWASLHWGFWLVAPLYVVAALSARLLRQ 388