BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3220.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08648118.1| Two-component system response regulator [gamm...   166   9e-40
ref|YP_001983019.1| two-component response regulator [Cellvibrio...   162   2e-38
ref|YP_564602.1| response regulator receiver [Shewanella denitri...   157   5e-37
ref|YP_003049172.1| response regulator receiver protein [Methylo...   150   5e-35
ref|YP_270609.1| response regulator [Colwellia psychrerythraea 3...   148   2e-34

>ref|ZP_08648118.1| Two-component system response regulator [gamma proteobacterium
           IMCC2047]
 gb|EGG99459.1| Two-component system response regulator [gamma proteobacterium
           IMCC2047]
          Length = 144

 Score =  166 bits (421), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 83/134 (61%), Positives = 104/134 (77%)

Query: 8   KEVSLLIVDDDDIDVMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLDLN 67
           K VS+L+V+DDDID MG+ RA +KL+VANP FRA DG+E L MLR G V  P L+ LDLN
Sbjct: 7   KAVSVLLVEDDDIDAMGVQRAFKKLRVANPIFRAHDGIEGLQMLRDGTVNHPRLIFLDLN 66

Query: 68  MPRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRDFMTA 127
           MPRMNG+E L+E+R D  LT +V+FVLTTSK +ED A AY+ HIAGY+ KS++D  F   
Sbjct: 67  MPRMNGLEMLKEIRNDPKLTDSVIFVLTTSKDDEDKAAAYKEHIAGYIVKSSLDNGFDDF 126

Query: 128 VGLLEHYWRIVELP 141
           + LL+HYWR+VELP
Sbjct: 127 MKLLDHYWRLVELP 140


>ref|YP_001983019.1| two-component response regulator [Cellvibrio japonicus Ueda107]
 gb|ACE83261.1| two-component response regulator [Cellvibrio japonicus Ueda107]
          Length = 152

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 90/141 (63%), Positives = 113/141 (80%)

Query: 4   PELRKEVSLLIVDDDDIDVMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVL 63
           P+  K V+LLIVDDDDIDV  L R L+KLK+ NP +RAKDG+EALD+LR+G VP+P +VL
Sbjct: 11  PQSLKTVNLLIVDDDDIDVTALKRTLQKLKLLNPLYRAKDGIEALDLLRNGEVPSPYIVL 70

Query: 64  LDLNMPRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRD 123
           LD+NMPRMNG+EFL  LRAD  LT  +VFVLTTSK++ED+  AY  H+AGY+ K  +D D
Sbjct: 71  LDINMPRMNGLEFLEHLRADPALTHAIVFVLTTSKSDEDIIAAYREHVAGYLLKQRMDSD 130

Query: 124 FMTAVGLLEHYWRIVELPKPY 144
           FM  VGLL+HYWR++ELP P+
Sbjct: 131 FMQVVGLLDHYWRVIELPSPH 151


>ref|YP_564602.1| response regulator receiver [Shewanella denitrificans OS217]
 gb|ABE56879.1| response regulator receiver protein [Shewanella denitrificans
           OS217]
          Length = 144

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/134 (60%), Positives = 104/134 (77%)

Query: 8   KEVSLLIVDDDDIDVMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLDLN 67
           KEVS+L+V+DDDID M + RAL+KL++ANP +RA DG+E L +LR+  V  P ++LLDLN
Sbjct: 7   KEVSILLVEDDDIDAMSIERALKKLRLANPYYRAVDGVEGLAILRNQGVGRPFIILLDLN 66

Query: 68  MPRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRDFMTA 127
           MPRMNG+E L ELR D  LT +VVFVLTTS  ++D A AY+ HIAGY+ KS +D DF   
Sbjct: 67  MPRMNGLEMLVELRKDPKLTDSVVFVLTTSNDDQDRAQAYKEHIAGYIVKSKLDSDFTEL 126

Query: 128 VGLLEHYWRIVELP 141
           + LL+HYWR+VELP
Sbjct: 127 LQLLDHYWRLVELP 140


>ref|YP_003049172.1| response regulator receiver protein [Methylotenera mobilis JLW8]
 gb|ACT48645.1| response regulator receiver protein [Methylotenera mobilis JLW8]
          Length = 146

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/115 (63%), Positives = 92/115 (80%)

Query: 27  RALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLDLNMPRMNGIEFLRELRADKVL 86
           RAL KLK+ N  +RA+DG EALDMLRS  VP P ++LLDLNMPRM G+EFL+ LR D +L
Sbjct: 28  RALRKLKLLNTVYRARDGQEALDMLRSNSVPQPYIILLDLNMPRMGGLEFLQVLRTDPLL 87

Query: 87  TKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRDFMTAVGLLEHYWRIVELP 141
           T +VVFVLTTSK++ED+  AY +HIAGY+ K  +DRDF+  + L+EHYWR+VELP
Sbjct: 88  THSVVFVLTTSKSDEDLVAAYRKHIAGYVFKQHMDRDFLEVISLIEHYWRLVELP 142


>ref|YP_270609.1| response regulator [Colwellia psychrerythraea 34H]
 gb|AAZ27026.1| response regulator [Colwellia psychrerythraea 34H]
          Length = 140

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/134 (55%), Positives = 101/134 (75%)

Query: 9   EVSLLIVDDDDIDVMGLYRALEKLKVANPCFRAKDGLEALDMLRSGVVPAPSLVLLDLNM 68
           +V+LL+V+DDD+D M + R+  K ++ANP  RA DG+EAL++LRS  V  P ++LLDL M
Sbjct: 7   DVTLLLVEDDDVDAMTIERSFLKQRIANPIVRAYDGIEALELLRSNKVSRPLIILLDLQM 66

Query: 69  PRMNGIEFLRELRADKVLTKTVVFVLTTSKAEEDMAMAYERHIAGYMTKSAVDRDFMTAV 128
           PRM GIEFL+ELRAD+ L++ VVFVLTTSK+EEDM  +Y +HIAGY  K      F+  V
Sbjct: 67  PRMGGIEFLKELRADENLSELVVFVLTTSKSEEDMLSSYRQHIAGYFVKGKSGAKFLDIV 126

Query: 129 GLLEHYWRIVELPK 142
            +L+ YW++V+LPK
Sbjct: 127 NVLDSYWKVVQLPK 140