BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3219.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_732680.1| multi-sensor signal transduction histidine kina... 242 8e-62 ref|YP_739525.1| multi-sensor signal transduction histidine kina... 241 2e-61 ref|YP_003049173.1| PAS/PAC sensor signal transduction histidine... 239 8e-61 ref|YP_962016.1| multi-sensor signal transduction histidine kina... 239 9e-61 ref|NP_716180.1| sensory box histidine kinase [Shewanella oneide... 238 2e-60 >ref|YP_732680.1| multi-sensor signal transduction histidine kinase [Shewanella sp. MR-4] gb|ABI37623.1| multi-sensor signal transduction histidine kinase [Shewanella sp. MR-4] Length = 717 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 164/238 (68%), Gaps = 8/238 (3%) Query: 151 RLEAQQIE----LKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVARNSTSIEEH 206 R+EAQ+IE L+R N EL FAY+ASHDLKSPLRGI QL NW+ EDL +++++ Sbjct: 476 RIEAQRIEHTAELERINKELDQFAYIASHDLKSPLRGIEQLTNWLSEDLAENTDENVQKY 535 Query: 207 LRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFDAYLPVSTFKLHLEGQ 266 L ++Q RI RM LLD LL++SR+GR ++++ +L++ +F P F L LEG Sbjct: 536 LGLIQSRIQRMVLLLDGLLMFSRIGRVDAERVEVDSRQLIEDMFALVAPPQGFSLALEGN 595 Query: 267 YFPMRTCQATLEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAEFTVSDDGPGIAPIF 326 + +T + LE V+RNL+SN++KHHD+ G I VIC + + F+V DDGPGI+ F Sbjct: 596 FPRFKTVKTLLELVIRNLISNAIKHHDKGEGVIK-VICETSNHHYWFSVIDDGPGISSRF 654 Query: 327 HQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTIRLRSNAPAERGCTFIFTWPI 384 H +VFQMFQTLRPRDEVEGSG+GL+LVKK VES GG I+L S RGC F F+WP+ Sbjct: 655 HGKVFQMFQTLRPRDEVEGSGLGLSLVKKTVESLGGKIQLESEG---RGCCFRFSWPM 709 >ref|YP_739525.1| multi-sensor signal transduction histidine kinase [Shewanella sp. MR-7] gb|ABI44468.1| multi-sensor signal transduction histidine kinase [Shewanella sp. MR-7] Length = 717 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 164/238 (68%), Gaps = 8/238 (3%) Query: 151 RLEAQQIE----LKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVARNSTSIEEH 206 R+EAQ+IE L+R N EL FAY+ASHDLKSPLRGI QL NW+ E+L +I+++ Sbjct: 476 RIEAQRIEHTAELERINKELDQFAYIASHDLKSPLRGIEQLTNWLSEELAENTDENIQKY 535 Query: 207 LRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFDAYLPVSTFKLHLEGQ 266 L ++Q RI RM LLD LL++SR+GR ++++ +L++ +F P F L LEG Sbjct: 536 LGLIQSRIQRMVLLLDGLLMFSRIGRVDAERVEVDSRQLIEDMFALVAPPQGFSLALEGN 595 Query: 267 YFPMRTCQATLEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAEFTVSDDGPGIAPIF 326 + +T + LE V+RNL+SN++KHHD+ G I VIC + + F+V DDGPGI+ F Sbjct: 596 FPRFKTVKTLLELVIRNLISNAIKHHDKGEGVIK-VICETSNHHYLFSVIDDGPGISSRF 654 Query: 327 HQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTIRLRSNAPAERGCTFIFTWPI 384 H +VFQMFQTLRPRDEVEGSG+GL+LVKK VES GG I+L S RGC F F+WP+ Sbjct: 655 HGKVFQMFQTLRPRDEVEGSGLGLSLVKKTVESLGGKIQLESEG---RGCCFRFSWPM 709 >ref|YP_003049173.1| PAS/PAC sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] gb|ACT48646.1| PAS/PAC sensor signal transduction histidine kinase [Methylotenera mobilis JLW8] Length = 502 Score = 239 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 131/244 (53%), Positives = 164/244 (67%), Gaps = 4/244 (1%) Query: 142 ITERVIANHRLEAQQIELKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVARNST 201 I+ERV A+ +L EL+RSN EL FAY+ASHDLKSPLRGI Q++ WI EDL +S Sbjct: 247 ISERVKASIKLAEHHEELERSNKELATFAYIASHDLKSPLRGIFQISQWIEEDLGKADSA 306 Query: 202 SIEEHLRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFDAYLPVSTFKL 261 SI H+ +++ R+ RM+ LLDDLL YSR GR + +I+ L Q IF+ P FKL Sbjct: 307 SIPSHMNLLRGRLRRMEHLLDDLLAYSRAGRLEGGLSEIDIGMLAQNIFEMQAPPDGFKL 366 Query: 262 HLEGQYFPMRTCQAT-LEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAEFTVSDDGP 320 L P+ T AT LEQVLRNL +N++KHHD GTI + + EF+V+DDGP Sbjct: 367 LLADD-LPIFTTLATPLEQVLRNLFTNAIKHHDSPIGTIKLDCEIKDKNHYEFSVTDDGP 425 Query: 321 GIAPIFHQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTIRLRSNAPAERGCTFIF 380 GI P +H+RVF MFQTLRPRDEVEGSGMGLALVKK+VE+ GG + + S RG + F Sbjct: 426 GIPPEYHERVFVMFQTLRPRDEVEGSGMGLALVKKIVETYGGHVCVISTGI--RGTSIRF 483 Query: 381 TWPI 384 TWPI Sbjct: 484 TWPI 487 >ref|YP_962016.1| multi-sensor signal transduction histidine kinase [Shewanella sp. W3-18-1] ref|YP_001184841.1| multi-sensor signal transduction histidine kinase [Shewanella putrefaciens CN-32] gb|ABM23462.1| multi-sensor signal transduction histidine kinase [Shewanella sp. W3-18-1] gb|ABP77042.1| multi-sensor signal transduction histidine kinase [Shewanella putrefaciens CN-32] gb|ADV55845.1| multi-sensor signal transduction histidine kinase [Shewanella putrefaciens 200] Length = 717 Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats. Identities = 119/238 (50%), Positives = 167/238 (70%), Gaps = 8/238 (3%) Query: 151 RLEAQQI----ELKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVARNSTSIEEH 206 R+E Q+ EL+R N EL FAY+ASHDLKSPLRGI QL +W+ EDLV + +++++ Sbjct: 476 RVEIQRAQHTKELERINQELDRFAYIASHDLKSPLRGIEQLTSWLAEDLVDNTNENVQKY 535 Query: 207 LRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFDAYLPVSTFKLHLEGQ 266 L ++Q RI RM LLD LL++SR+GR + +++A +L++ +F+ P F+L LEG+ Sbjct: 536 LGLIQNRIHRMVLLLDGLLMFSRIGRVDAEIVEVDARQLIEDMFELVAPPQGFELLLEGE 595 Query: 267 YFPMRTCQATLEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAEFTVSDDGPGIAPIF 326 + +T + LE V+RNL+SN++KHHDR G I V C D+ F+V DDGPGI+ + Sbjct: 596 FPNFKTVKTLLELVVRNLMSNAIKHHDRDTGVIKVQ-CEPKGDVYWFSVVDDGPGISKAY 654 Query: 327 HQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTIRLRSNAPAERGCTFIFTWPI 384 H +VF+MFQTL+PRDEVEGSG+GL+LVKK +ES GG I+L S RGC F F+WP+ Sbjct: 655 HGKVFEMFQTLKPRDEVEGSGLGLSLVKKTIESLGGEIKLESEG---RGCRFRFSWPV 709 >ref|NP_716180.1| sensory box histidine kinase [Shewanella oneidensis MR-1] gb|AAN53625.1|AE015501_8 sensory box histidine kinase [Shewanella oneidensis MR-1] Length = 717 Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 125/247 (50%), Positives = 170/247 (68%), Gaps = 12/247 (4%) Query: 142 ITERVIANHRLEAQQIE----LKRSNDELLAFAYVASHDLKSPLRGIGQLANWIREDLVA 197 I+ER R+EAQ+IE L+R N EL FAY+ASHDLKSPLRGI QL W+ EDLV Sbjct: 471 ISER----KRIEAQRIEHMAELERINQELDRFAYIASHDLKSPLRGIEQLTTWLSEDLVD 526 Query: 198 RNSTSIEEHLRMMQQRIARMDKLLDDLLLYSRVGRSHLLMDDINAYELVQQIFDAYLPVS 257 + +++++L ++Q RI RM +LLD LL +SR+GR M ++++ +LV+ +F P Sbjct: 527 NTNENVQKYLGLIQNRIQRMVRLLDGLLTFSRIGRVDNEMVEVDSRQLVEDMFALVAPPQ 586 Query: 258 TFKLHLEGQYFPMRTCQATLEQVLRNLVSNSVKHHDRQHGTITVVICRSGDDLAEFTVSD 317 F+L LEG + +T + LE V+RNL+SN++KHHDR G + V+C + + F+V D Sbjct: 587 GFELVLEGDFPHFKTVKTLLELVVRNLISNAIKHHDRGFGVLK-VLCETKNTYYWFSVVD 645 Query: 318 DGPGIAPIFHQRVFQMFQTLRPRDEVEGSGMGLALVKKLVESAGGTIRLRSNAPAERGCT 377 DGPGI+ F +VF+MFQTLRPRDEVEGSG+GL+LVKK V+S GG I+L S RGC Sbjct: 646 DGPGISSEFQLKVFEMFQTLRPRDEVEGSGLGLSLVKKTVDSLGGKIQLES---VGRGCC 702 Query: 378 FIFTWPI 384 F F+WPI Sbjct: 703 FRFSWPI 709