BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3218.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06636962.1| TetR family transcriptional regulator [Serrat... 105 6e-21 ref|YP_559859.1| TetR family transcriptional regulator [Burkhold... 97 1e-18 gb|AEJ98626.1| putative TetR-family trancriptional regulatory pr... 96 3e-18 ref|ZP_06017242.1| conserved hypothetical protein [Klebsiella pn... 96 5e-18 ref|YP_002919929.1| putative TetR-family trancriptional regulato... 94 1e-17 >ref|ZP_06636962.1| TetR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE97970.1| TetR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 210 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 1/203 (0%) Query: 10 TRRRSGRPRNPESRVRLLDAGRMLILKHGLDFNIESIAVNAGVARRTFYSYFEDKKAFVA 69 T RR GRP++P +L A R L L+ GL+ E IA AGVA+ T YS F DK+ + Sbjct: 4 TIRRKGRPKDPLKAHAILQAARTLFLEKGLEVTTEEIARVAGVAKATLYSNFADKEMLIE 63 Query: 70 ELLRDAETAIGKSQDKSAGILEKPLADALYELGMDYLSGISLRKELSGTRLLASTNKTYS 129 +LR E+ + S D PLA+ L G ++ I+ R+ RL+AS + + Sbjct: 64 AVLRQ-ESDLTISDDDFEQRHHLPLANVLTAFGNRFVRFINQRELTGWDRLIASASIRHP 122 Query: 130 SLVERLFLEARSRDIALLTRIVEQGMANGRLISCDASQAVGDIVGLWHGAEVWQMMMGSL 189 L +R + R +L I+ + + G L CD +A D+ GLW G ++ +G+ Sbjct: 123 DLPKRFYAAGPGRAQQMLEAIIAEAITKGTLRECDPGEAADDLAGLWLGMTSLEIKLGAR 182 Query: 190 PTPSHEETSRRVRRGVDMFLCIY 212 + EE + RV +D+F+ Y Sbjct: 183 NALTDEEINHRVAHALDIFMRSY 205 >ref|YP_559859.1| TetR family transcriptional regulator [Burkholderia xenovorans LB400] emb|CAE92871.1| TetR-type transcriptional regulator [Pseudomonas putida] gb|ABE31807.1| transcriptional regulator, TetR family [Burkholderia xenovorans LB400] Length = 219 Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 1/202 (0%) Query: 11 RRRSGRPRNPESRVRLLDAGRMLILKHGLDFNIESIAVNAGVARRTFYSYFEDKKAFVAE 70 +R GRP++ + LLDA R L+L G D I+ IA +AG+A+ T Y+ F DK A + Sbjct: 5 KRPRGRPKDDAKKTALLDAARALLLARGPDVTIDEIAASAGIAKATVYANFADKNALIEA 64 Query: 71 LLRDAETAIGKSQDKSAGILEKPLADALYELGMDYLSGISLRKELSGTRLLASTNKTYSS 130 ++R E+ + + ++ + + P+ADAL+E G+ ++ I+ R L RL+AS + Sbjct: 65 VIR-RESDMTITDEQLVRLAKAPIADALFEFGVQFVRFINHRDLLGWDRLIASLEAHQTE 123 Query: 131 LVERLFLEARSRDIALLTRIVEQGMANGRLISCDASQAVGDIVGLWHGAEVWQMMMGSLP 190 L +R F R LLT+++ +A+G++ + DA+ A + GLW G ++ +G Sbjct: 124 LPKRFFDLGPGRGQRLLTKMIADAVASGQIETDDAAYAADALTGLWLGFVNLEIKLGVRQ 183 Query: 191 TPSHEETSRRVRRGVDMFLCIY 212 E ++RVRRG+D+F+ IY Sbjct: 184 PMKANEITQRVRRGIDIFMKIY 205 >gb|AEJ98626.1| putative TetR-family trancriptional regulatory protein [Klebsiella pneumoniae KCTC 2242] Length = 210 Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 7 LGATRRRSGRPRNPESRVRLLDAGRMLILKHGLDFNIESIAVNAGVARRTFYSYFEDKKA 66 + T R+ GRP++P +L A R L L+ GL+ IA AGVA+ T Y+ F DK+ Sbjct: 1 MSETPRQKGRPKDPLKTQAILQAARKLFLEQGLEVTTAEIARVAGVAKATLYANFSDKEH 60 Query: 67 FVAELLRDAETAIGKSQDKSAGILEKPLADALYELGMDYLSGISLRKELSGTRLLASTNK 126 + +LR E+ + S A PL + L G ++ I+ R+ RL+AS Sbjct: 61 LIEAVLRQ-ESDLTISDHDFAQRHHLPLIEVLTAFGYRFVRFINQRELTGWDRLIASAAV 119 Query: 127 TYSSLVERLFLEARSRDIALLTRIVEQGMANGRLISCDASQAVGDIVGLWHGAEVWQMMM 186 + L R + R +L I+ + + G L +CD +A ++ GLW G + + Sbjct: 120 RHPDLPGRFYAAGPGRAQQMLEAIIAEAIEAGTLRACDPQEAADELAGLWLGMTSLAIKL 179 Query: 187 GSLPTPSHEETSRRVRRGVDMFLCIY 212 G+ P S +E +RV R +D+FL Y Sbjct: 180 GARPPLSDDEIKQRVERALDVFLRAY 205 >ref|ZP_06017242.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gb|EEW39666.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 210 Score = 95.5 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 1/206 (0%) Query: 7 LGATRRRSGRPRNPESRVRLLDAGRMLILKHGLDFNIESIAVNAGVARRTFYSYFEDKKA 66 + T R+ GRP++P +L A R L L+ GL+ IA AGVA+ T Y+ F DK+ Sbjct: 1 MSETPRQKGRPKDPLKTQAILQAARKLFLEQGLEVTTAEIARVAGVAKATLYANFSDKEH 60 Query: 67 FVAELLRDAETAIGKSQDKSAGILEKPLADALYELGMDYLSGISLRKELSGTRLLASTNK 126 + +LR E+ + S A PL + L G ++ I+ R+ RL+AS Sbjct: 61 LIEAVLRQ-ESDLTISDHDFAQRHHLPLIEVLTAFGYRFVRFINQRELTGWDRLIASAAV 119 Query: 127 TYSSLVERLFLEARSRDIALLTRIVEQGMANGRLISCDASQAVGDIVGLWHGAEVWQMMM 186 + L R + R +L I+ + + G L +CD +A ++ GLW G + + Sbjct: 120 RHPDLPGRFYAAGPGRAQQMLEAIIAEAIEAGTLRACDPQEAADELAGLWLGMTSLAIKL 179 Query: 187 GSLPTPSHEETSRRVRRGVDMFLCIY 212 G+ P S +E +RV R +D+FL Y Sbjct: 180 GARPPLSDDEIKQRVERALDVFLRAY 205 >ref|YP_002919929.1| putative TetR-family trancriptional regulatory protein [Klebsiella pneumoniae NTUH-K2044] dbj|BAH63862.1| putative TetR-family trancriptional regulatory protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 210 Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 1/206 (0%) Query: 7 LGATRRRSGRPRNPESRVRLLDAGRMLILKHGLDFNIESIAVNAGVARRTFYSYFEDKKA 66 + T R+ GRP++P +L A R L L+ GL+ IA AGVA+ T Y+ F DK+ Sbjct: 1 MSETPRQKGRPKDPLKTQAILQAARKLFLEQGLEVTTAEIARVAGVAKATLYANFSDKEH 60 Query: 67 FVAELLRDAETAIGKSQDKSAGILEKPLADALYELGMDYLSGISLRKELSGTRLLASTNK 126 + +LR E+ + S A PL + L G ++ I+ R+ RL+AS Sbjct: 61 LIEAVLRQ-ESDLTISDHDFAQRHHLPLIEVLTAFGYRFVRFINQRELTGWDRLIASAAV 119 Query: 127 TYSSLVERLFLEARSRDIALLTRIVEQGMANGRLISCDASQAVGDIVGLWHGAEVWQMMM 186 L R + R +L I+ + + G L +CD +A ++ GLW G + + Sbjct: 120 RRPDLPGRFYAAGPGRAQQMLEAIIAEAIEAGTLRACDPQEAADELAGLWLGMTSLAIKL 179 Query: 187 GSLPTPSHEETSRRVRRGVDMFLCIY 212 G+ P S +E +RV R +D+FL Y Sbjct: 180 GARPPLSDDEIKQRVERALDVFLRAY 205