BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3215.p (437 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04902189.1| phage integrase [Burkholderia pseudomallei S1... 320 3e-85 ref|ZP_03794499.1| integrase family protein [Burkholderia pseudo... 320 3e-85 ref|ZP_01763718.1| hydrolase, alpha/beta fold family [Burkholder... 320 3e-85 ref|YP_442444.1| integrative genetic element Gsu32, integrase [B... 320 3e-85 ref|YP_002794378.1| Integrase [Laribacter hongkongensis HLHK9] >... 310 4e-82 >ref|ZP_04902189.1| phage integrase [Burkholderia pseudomallei S13] gb|EDS85201.1| phage integrase [Burkholderia pseudomallei S13] Length = 433 Score = 320 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 184/422 (43%), Positives = 246/422 (58%), Gaps = 4/422 (0%) Query: 2 FNAITVQSLPAGKHLTIPKHRGLRLRANESMYNWIYRYKNPNDGRIRQVKLGEWPHMSLN 61 F+A T + L G HL I GLRL A S +WIYRYK+P DGR+RQ+K+GEWP +S+ Sbjct: 3 FDARTAKQLSPGAHLKIDGCPGLRLEATASRRSWIYRYKSPVDGRMRQIKIGEWPALSIA 62 Query: 62 SAVRQWRQLKSLRDQGIDPSTVHRKAERPQRDSVSMSNESAAQLTVQQIGFYYYEGHVKH 121 +A +W +LK R+ G DP+ R+A DSV + + TV+ I Y GHV+ Sbjct: 63 AAAVEWERLKQARNAGNDPALAKRQAN----DSVGVMVQQGDSPTVRDICSAYLTGHVER 118 Query: 122 HWGERGAKEVWRIFARTLGELADLPAQAVDADMAADFLRGFLDRPTQGTITRRELGAAWD 181 + +GA EV R+F LG++ADLPA V + A + + P Q + R ELGAAWD Sbjct: 119 NRQSKGAAEVARMFRTMLGDIADLPAVEVTRERAFSKIDSYRHVPVQASRLRLELGAAWD 178 Query: 182 YAIAHGLLPAKCVNVWRSVMRGEFKSKGVRIKGVHRGPVKRLLSVNELAVLLPWLHHFTS 241 YA+ G LP N WR +MRG +S G RI+G G KR L+ E+ L+ WL +F+ Sbjct: 179 YALDAGRLPESASNWWRQIMRGRLRSNGRRIQGQPMGTAKRFLTDAEVGALITWLPNFSR 238 Query: 242 TNEDILTLFAWTCAPGKEICAMHAREISEEQDGWWWTIPEVKLRPQRRRAASDFRVPLVG 301 ED LTL+ WT G EICAM EI+EE+DG WWTIP+VK + R A+D RVPLVG Sbjct: 239 NVEDALTLYLWTGTRGAEICAMEGTEITEERDGMWWTIPKVKTKSARHEKATDLRVPLVG 298 Query: 302 RALEIVQRRLLASGTGYLFEGRKGGRFDPKNVGVAVWNAREDCDSRPEYQRPRLPISDWT 361 RA IV+RRL G G+LF +GG K G AV +RPE +RPRLP++ W Sbjct: 299 RADAIVRRRLERYGKGWLFPAERGGHMQQKVFGQAVHCHMPYSVTRPEQERPRLPVTHWA 358 Query: 362 PNDLRRAAIELLKTMECPPEILAAVQGQLGNRLRLSTDGRVHAALKRLWMTRLAQVLEQL 421 P+DLRR A +L + CP EI A+ G + + + + A +R W+T+L + LE Sbjct: 359 PHDLRRTARTILAALGCPYEIGEAILGHMLPGVGGIYNRHSYDAERRHWLTKLDEKLEAA 418 Query: 422 MR 423 R Sbjct: 419 TR 420 >ref|ZP_03794499.1| integrase family protein [Burkholderia pseudomallei Pakistan 9] ref|YP_002897427.1| integrase family protein [Burkholderia pseudomallei MSHR346] gb|EEH25060.1| integrase family protein [Burkholderia pseudomallei Pakistan 9] gb|ACQ95427.1| integrase family protein [Burkholderia pseudomallei MSHR346] Length = 433 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 184/422 (43%), Positives = 246/422 (58%), Gaps = 4/422 (0%) Query: 2 FNAITVQSLPAGKHLTIPKHRGLRLRANESMYNWIYRYKNPNDGRIRQVKLGEWPHMSLN 61 F+A T + L G HL I GLRL A S +WIYRYK+P DGR+RQ+K+GEWP +S+ Sbjct: 3 FDARTAKQLSPGAHLKIDGCPGLRLEATASRRSWIYRYKSPVDGRMRQIKIGEWPALSIA 62 Query: 62 SAVRQWRQLKSLRDQGIDPSTVHRKAERPQRDSVSMSNESAAQLTVQQIGFYYYEGHVKH 121 +A +W +LK R+ G DP+ R+A DSV + + TV+ I Y GHV+ Sbjct: 63 AAAVEWERLKQARNAGNDPALAKRQAN----DSVGVMVQQGDSPTVRDICSAYLTGHVER 118 Query: 122 HWGERGAKEVWRIFARTLGELADLPAQAVDADMAADFLRGFLDRPTQGTITRRELGAAWD 181 + +GA EV R+F LG++ADLPA V + A + + P Q + R ELGAAWD Sbjct: 119 NRQSKGAAEVARMFRTMLGDIADLPAVEVTRERAFSKIDSYRHVPVQASRLRLELGAAWD 178 Query: 182 YAIAHGLLPAKCVNVWRSVMRGEFKSKGVRIKGVHRGPVKRLLSVNELAVLLPWLHHFTS 241 YA+ G LP N WR +MRG +S G RI+G G KR L+ E+ L+ WL +F+ Sbjct: 179 YALDAGRLPESASNWWRQIMRGRLRSNGRRIQGQPMGTAKRFLTDAEVGALITWLPNFSR 238 Query: 242 TNEDILTLFAWTCAPGKEICAMHAREISEEQDGWWWTIPEVKLRPQRRRAASDFRVPLVG 301 ED LTL+ WT G EICAM EI+EE+DG WWTIP+VK + R A+D RVPLVG Sbjct: 239 NVEDALTLYLWTGTRGAEICAMEGTEITEERDGLWWTIPKVKTKSARHEKATDLRVPLVG 298 Query: 302 RALEIVQRRLLASGTGYLFEGRKGGRFDPKNVGVAVWNAREDCDSRPEYQRPRLPISDWT 361 RA IV+RRL G G+LF +GG K G AV +RPE +RPRLP++ W Sbjct: 299 RADAIVRRRLERYGKGWLFPAERGGHMQQKVFGQAVHCHMPYSVTRPEQERPRLPVTHWA 358 Query: 362 PNDLRRAAIELLKTMECPPEILAAVQGQLGNRLRLSTDGRVHAALKRLWMTRLAQVLEQL 421 P+DLRR A +L + CP EI A+ G + + + + A +R W+T+L + LE Sbjct: 359 PHDLRRTARTILAALGCPYEIGEAILGHMLPGVGGIYNRHSYDAERRHWLTKLDEKLEAA 418 Query: 422 MR 423 R Sbjct: 419 TR 420 >ref|ZP_01763718.1| hydrolase, alpha/beta fold family [Burkholderia pseudomallei 305] gb|EBA50732.1| hydrolase, alpha/beta fold family [Burkholderia pseudomallei 305] Length = 433 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 184/422 (43%), Positives = 246/422 (58%), Gaps = 4/422 (0%) Query: 2 FNAITVQSLPAGKHLTIPKHRGLRLRANESMYNWIYRYKNPNDGRIRQVKLGEWPHMSLN 61 F+A T + L G HL I GLRL A S +WIYRYK+P DGR+RQ+K+GEWP +S+ Sbjct: 3 FDARTAKQLSPGAHLKIDGCPGLRLEATASRRSWIYRYKSPVDGRMRQIKIGEWPALSIA 62 Query: 62 SAVRQWRQLKSLRDQGIDPSTVHRKAERPQRDSVSMSNESAAQLTVQQIGFYYYEGHVKH 121 +A +W +LK R+ G DP+ R+A DSV + + TV+ I Y GHV+ Sbjct: 63 AAAVEWERLKQARNAGNDPALAKRQAN----DSVGVMVQQGDSPTVRDICSAYLTGHVER 118 Query: 122 HWGERGAKEVWRIFARTLGELADLPAQAVDADMAADFLRGFLDRPTQGTITRRELGAAWD 181 + +GA EV R+F LG++ADLPA V + A + + P Q + R ELGAAWD Sbjct: 119 NRQSKGAAEVARMFRTMLGDIADLPAVEVTRERAFSKIDSYRHVPVQASRLRLELGAAWD 178 Query: 182 YAIAHGLLPAKCVNVWRSVMRGEFKSKGVRIKGVHRGPVKRLLSVNELAVLLPWLHHFTS 241 YA+ G LP N WR +MRG +S G RI+G G KR L+ E+ L+ WL +F+ Sbjct: 179 YALDAGRLPESASNWWRQIMRGRLRSNGRRIQGQPMGTAKRFLTDAEVGALITWLPNFSR 238 Query: 242 TNEDILTLFAWTCAPGKEICAMHAREISEEQDGWWWTIPEVKLRPQRRRAASDFRVPLVG 301 ED LTL+ WT G EICAM EI+EE+DG WWTIP+VK + R A+D RVPLVG Sbjct: 239 NVEDALTLYLWTGTRGAEICAMEGAEITEERDGLWWTIPKVKTKSARHEKATDLRVPLVG 298 Query: 302 RALEIVQRRLLASGTGYLFEGRKGGRFDPKNVGVAVWNAREDCDSRPEYQRPRLPISDWT 361 RA IV+RRL G G+LF +GG K G AV +RPE +RPRLP++ W Sbjct: 299 RADAIVRRRLERYGKGWLFPAERGGHMQQKVFGQAVHCHMPYSVTRPEQERPRLPVTHWA 358 Query: 362 PNDLRRAAIELLKTMECPPEILAAVQGQLGNRLRLSTDGRVHAALKRLWMTRLAQVLEQL 421 P+DLRR A +L + CP EI A+ G + + + + A +R W+T+L + LE Sbjct: 359 PHDLRRTARTILAALGCPYEIGEAILGHMLPGVGGIYNRHSYDAERRHWLTKLDEKLEAA 418 Query: 422 MR 423 R Sbjct: 419 TR 420 >ref|YP_442444.1| integrative genetic element Gsu32, integrase [Burkholderia thailandensis E264] gb|ABC39126.1| integrative genetic element Gsu32, integrase, putative [Burkholderia thailandensis E264] Length = 433 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 184/422 (43%), Positives = 246/422 (58%), Gaps = 4/422 (0%) Query: 2 FNAITVQSLPAGKHLTIPKHRGLRLRANESMYNWIYRYKNPNDGRIRQVKLGEWPHMSLN 61 F+A T + L G HL I GLRL A S +WIYRYK+P DGR+RQ+K+GEWP +S+ Sbjct: 3 FDARTAKQLSPGAHLKIDGCPGLRLEATASRRSWIYRYKSPVDGRMRQIKIGEWPALSIA 62 Query: 62 SAVRQWRQLKSLRDQGIDPSTVHRKAERPQRDSVSMSNESAAQLTVQQIGFYYYEGHVKH 121 +A +W +LK R+ G DP+ R+A DSV + + TV+ I Y GHV+ Sbjct: 63 AAAVEWERLKQARNVGNDPALAKRQAN----DSVGVMVQQGDSPTVRDICSAYLTGHVER 118 Query: 122 HWGERGAKEVWRIFARTLGELADLPAQAVDADMAADFLRGFLDRPTQGTITRRELGAAWD 181 + +GA EV R+F LG++ADLPA V + A + + P Q + R ELGAAWD Sbjct: 119 NRQSKGAAEVARMFRTMLGDIADLPAVEVTRERAFSKIDSYRHVPVQASRLRLELGAAWD 178 Query: 182 YAIAHGLLPAKCVNVWRSVMRGEFKSKGVRIKGVHRGPVKRLLSVNELAVLLPWLHHFTS 241 YA+ G LP N WR +MRG +S G RI+G G KR L+ E+ L+ WL +F+ Sbjct: 179 YALDAGRLPESASNWWRQIMRGRLRSNGRRIQGQPMGTAKRFLTDAEVGALITWLPNFSR 238 Query: 242 TNEDILTLFAWTCAPGKEICAMHAREISEEQDGWWWTIPEVKLRPQRRRAASDFRVPLVG 301 ED LTL+ WT G EICAM EI+EE+DG WWTIP+VK + R A+D RVPLVG Sbjct: 239 NVEDALTLYLWTGTRGAEICAMEGTEITEERDGLWWTIPKVKTKSARHEKATDLRVPLVG 298 Query: 302 RALEIVQRRLLASGTGYLFEGRKGGRFDPKNVGVAVWNAREDCDSRPEYQRPRLPISDWT 361 RA IV+RRL G G+LF +GG K G AV +RPE +RPRLP++ W Sbjct: 299 RADAIVRRRLERYGKGWLFPAERGGHMQQKVFGQAVHCHMPYSVTRPEQERPRLPVTHWA 358 Query: 362 PNDLRRAAIELLKTMECPPEILAAVQGQLGNRLRLSTDGRVHAALKRLWMTRLAQVLEQL 421 P+DLRR A +L + CP EI A+ G + + + + A +R W+T+L + LE Sbjct: 359 PHDLRRTARTILAALGCPYEIGEAILGHMLPGVGGIYNRHSYDAERRHWLTKLDEKLEAA 418 Query: 422 MR 423 R Sbjct: 419 TR 420 >ref|YP_002794378.1| Integrase [Laribacter hongkongensis HLHK9] gb|ACO73369.1| Integrase [Laribacter hongkongensis HLHK9] Length = 443 Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 175/429 (40%), Positives = 249/429 (58%), Gaps = 10/429 (2%) Query: 1 MFNAITVQSLPAGKHLTIPKHRGLRLRANESMYNWIYRYKNPNDGRIRQVKLGEWPHMSL 60 MF+A +SL G+HLT P H GLRL A+ +WIYRY+N + G ++Q+K+G WP MS+ Sbjct: 14 MFDARAAKSLEPGQHLTSPAHPGLRLEASTRYRSWIYRYRN-SSGELKQIKIGTWPAMSV 72 Query: 61 NSAVRQWRQLKSLRDQGIDPSTVHRKAERPQRDSVSMSNESAAQLTVQQIGFY--YYEGH 118 ++A+ +W +L+ LRD GIDP+ RKA R + + + AAQ + I Y+ GH Sbjct: 73 HAAIVEWERLRVLRDSGIDPAA-ERKAARVAKAVETARKKLAAQNPYRVIDLCQDYWNGH 131 Query: 119 VKHHWGERGAKEVWRIFARTLGELADLPAQAVDADMAADFLRGFLDR-PTQGTITRRELG 177 V+ + +GA E WRIF LG+ AD+ A +V A D ++ + + P Q R ELG Sbjct: 132 VRVNRVAKGATETWRIFDTMLGDFADVEASSVTRSQAFDLIKSYAESAPVQAIRLRAELG 191 Query: 178 AAWDYAIAHGLLPAKCVNVWRSVMRGEFKSKGVRIKGVHRGPVKRLLSVNELAVLLPWLH 237 AAWDYAI G LP N WR ++RG+ KSKG I G G VKR LS +E ++LL WL Sbjct: 192 AAWDYAIDSGRLPESTPNWWRHILRGKIKSKGKAISGQRVGVVKRALSPDEASILLKWLP 251 Query: 238 HFTSTNEDILTLFAWTCAPGKEICAMHAREISEEQDG-WWWTIPEVKLRPQRRRAASDFR 296 +F+ T D+L ++ WTC G EI AM EI DG WWWTIP+ K + R A+D R Sbjct: 252 NFSKTIHDVLIIYMWTCTRGAEIVAMRGSEIHVADDGQWWWTIPKEKTKNARLDRATDLR 311 Query: 297 VPLVGRALEIVQRRLLASGTGYLFEGRKGGRFDP----KNVGVAVWNAREDCDSRPEYQR 352 VPL GRAL ++QRR G+GYLF + R K + V+ + C + P+ R Sbjct: 312 VPLFGRALAVIQRRCELHGSGYLFPVARPSRISEHVLQKTIQAGVFYHQPYCKTTPQRDR 371 Query: 353 PRLPISDWTPNDLRRAAIELLKTMECPPEILAAVQGQLGNRLRLSTDGRVHAALKRLWMT 412 PRLP++ W P+DLRR++ L + CP E+ ++ G + + + + A + W+ Sbjct: 372 PRLPVTHWAPHDLRRSSRTFLARLGCPSEVAESITGHILPGVAGVYNQYSYDAERIEWLR 431 Query: 413 RLAQVLEQL 421 +L+ LEQL Sbjct: 432 KLSDYLEQL 440