BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3214.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775763.1| phage protein [Herbaspirillum seropedicae Sm...    71   9e-11
ref|YP_840848.1| hypothetical protein H16_B1328 [Ralstonia eutro...    69   5e-10
ref|ZP_02376695.1| hypothetical protein BuboB_03159 [Burkholderi...    68   9e-10
ref|YP_111053.1| hypothetical protein BPSS1047 [Burkholderia pse...    67   1e-09
ref|ZP_02493638.1| hypothetical protein BpseN_29655 [Burkholderi...    67   1e-09

>ref|YP_003775763.1| phage protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63855.1| phage protein [Herbaspirillum seropedicae SmR1]
          Length = 103

 Score = 71.2 bits (173), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/102 (40%), Positives = 58/102 (56%)

Query: 70  MQTNDYLELVKRKLDLQSDQALANVLGVTRSAISHMKSGKSGIGDATAVKVAQLTGIPVA 129
           M T +YL+  K +L L SD ALA  L V++  IS  ++G+S I D  A+K+A L G    
Sbjct: 1   MNTLEYLDEAKNRLGLPSDYALAKALKVSQPTISGYRAGRSRIDDDVALKLANLIGRDPL 60

Query: 130 RVLIDVHLERSKAPEVKAAWASMMEKFPTPTDLHMSYRSQHL 171
            V+   ++ER+K PE+KA W  ++EK     D  M  RS  L
Sbjct: 61  EVIATANIERAKTPEMKALWMGLLEKISKSFDTLMPRRSPRL 102


>ref|YP_840848.1| hypothetical protein H16_B1328 [Ralstonia eutropha H16]
 emb|CAJ96118.1| Hypothetical protein H16_B1328 [Ralstonia eutropha H16]
          Length = 108

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/85 (37%), Positives = 54/85 (63%)

Query: 72  TNDYLELVKRKLDLQSDQALANVLGVTRSAISHMKSGKSGIGDATAVKVAQLTGIPVARV 131
           T +Y++ VK +LDL SD A+A  LGV+R A+S  + GK+   D TAV+VA++ G+    V
Sbjct: 4   TLEYVDAVKIRLDLPSDYAIAKSLGVSRQAVSQYRQGKAAFDDLTAVRVAEILGLNPMEV 63

Query: 132 LIDVHLERSKAPEVKAAWASMMEKF 156
           +   + ER+K+ + +  W  + ++F
Sbjct: 64  IAAANRERAKSEDARRVWTGLFDRF 88


>ref|ZP_02376695.1| hypothetical protein BuboB_03159 [Burkholderia ubonensis Bu]
          Length = 110

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)

Query: 75  YLELVKRKLDLQSDQALANVLGVTRSA-ISHMKSGKSGIGDATAVKVAQLTGIPVARVLI 133
           YL+L K +  L SD AL+  LG + +A IS+ + G+S   DA A+K+A L  I  A +L 
Sbjct: 7   YLDLAKARAGLASDYALSKALGASSTATISNYRKGRSHFDDAMAIKIAHLCQIDPAEILF 66

Query: 134 DVHLERSKAPEVKAAWASMMEKF 156
            + +ER+K+ E +A W+ ++EKF
Sbjct: 67  SMQIERAKSDEARAVWSGLLEKF 89


>ref|YP_111053.1| hypothetical protein BPSS1047 [Burkholderia pseudomallei K96243]
 ref|YP_439564.1| hypothetical protein BTH_II1368 [Burkholderia thailandensis E264]
 ref|YP_001111174.1| gp24, hypothetical protein [Burkholderia phage phiE12-2]
 ref|ZP_02501857.1| hypothetical protein Bpse112_30036 [Burkholderia pseudomallei 112]
 ref|ZP_05590956.1| hypothetical protein BthaA_26268 [Burkholderia thailandensis E264]
 emb|CAH38508.1| hypothetical bacteriophage protein [Burkholderia pseudomallei
           K96243]
 gb|ABC36094.1| Hypothetical protein BTH_II1368 [Burkholderia thailandensis E264]
 gb|ABO60778.1| gp24, hypothetical protein [Burkholderia phage phiE12-2]
          Length = 112

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 72  TNDYLELVKRKLDLQSDQALANVLGVTRSAISHMKSGKSGIGDATAVKVAQLTGIPVARV 131
           T D+L+ VK +LDL SD A A VLGVTR A+S  ++ +S   + TA++VA++ G+    V
Sbjct: 4   TVDWLDAVKARLDLPSDYAAAKVLGVTRGAVSKYRNQQSVFDEKTAIRVAEILGVDPFEV 63

Query: 132 LIDVHLERSKAPEVKAAWASMMEKF 156
           +   H E S+    KA W   +E F
Sbjct: 64  IATAHAESSRDDRTKAIWVHALEVF 88


>ref|ZP_02493638.1| hypothetical protein BpseN_29655 [Burkholderia pseudomallei NCTC
           13177]
          Length = 112

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query: 72  TNDYLELVKRKLDLQSDQALANVLGVTRSAISHMKSGKSGIGDATAVKVAQLTGIPVARV 131
           T D+L+ VK +LDL SD A A VLGVTR A+S  ++ +S   + TA++VA++ G+    V
Sbjct: 4   TVDWLDAVKARLDLPSDYAAAKVLGVTRGAVSKYRNQQSVFDEKTAIRVAEILGVDPFEV 63

Query: 132 LIDVHLERSKAPEVKAAWASMMEKF 156
           +   H E S+    KA W   +E F
Sbjct: 64  IATTHAESSRDDRTKAIWVHALEVF 88