BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3212.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EGE61042.1| copper resistance D domain-containing protein [Rh... 140 1e-31 ref|YP_002551067.1| Cu resistance protein [Agrobacterium vitis S... 112 5e-23 ref|YP_001561475.1| copper resistance D domain-containing protei... 103 1e-20 gb|ADN85632.1| CopD [Achromobacter sp. AO22] 102 3e-20 ref|YP_004213604.1| copper resistance D domain-containing protei... 96 4e-18 >gb|EGE61042.1| copper resistance D domain-containing protein [Rhizobium etli CNPAF512] Length = 230 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 96/210 (45%), Positives = 124/210 (59%), Gaps = 3/210 (1%) Query: 2 LAAVANGTSIGTAWWTQLVAICLLLLGVTSSDRMRLLACIAGGGIMLTSLALTGHAVMHE 61 L VA T+IGTAW Q A LLL +R+ A +L SL +TGHA M+ Sbjct: 22 LLGVAFDTNIGTAWLCQSAAAILLLCTSLLPHGLRIGATALASAFILASLPITGHAAMNG 81 Query: 62 GWTGLLHQANDVLHVWSVGAWIGALPVVLMILSDQYRRTYPDLVSTIFRRFSNIGHAVVA 121 GW G+LH+ANDV+H+ + GAW GAL VL+ LS D + RFS GH VA Sbjct: 82 GWLGILHRANDVVHLLAGGAWFGALFPVLLTLSRLKESHTRDQATAALIRFSTAGHVAVA 141 Query: 122 LVFLTGLLNTLLILGRLPLDFHFRYQALLTMKILVAGAMMAIAVFNRYVLVPSMRHHRNA 181 +V L+G++N LLILG PLD+ F YQ LLT+KI + AM IA+ NRYV VP +R + Sbjct: 142 IVILSGIVNMLLILGGPPLDWTFAYQRLLTIKIGLVAAMTLIAIANRYVFVPRLRRRHKS 201 Query: 182 LRQIRRLTLAEILLSWFALMLLAWLGMLQP 211 L T+AEILL+ + L+AW G L+P Sbjct: 202 LVA---GTMAEILLATAVIALVAWFGTLEP 228 >ref|YP_002551067.1| Cu resistance protein [Agrobacterium vitis S4] gb|ACM38055.1| Cu resistance protein [Agrobacterium vitis S4] Length = 292 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 88/214 (41%), Positives = 115/214 (53%), Gaps = 6/214 (2%) Query: 1 MLAAVANGTSIGTAWWTQLVAICLLLLGVTSSDRMRLLACIAGGGIMLTSLALTGHAVMH 60 ++ + T G A+ Q +L+LG + R R G +L SL+L+GHAV Sbjct: 81 LMIDLLTATQSGRAFGLQAGLALVLVLGYYTLPRHRGPVVTLLGAPLLMSLSLSGHAVAQ 140 Query: 61 EGWTGLLHQANDVLHVWSVGAWIGALPVVLMILSDQYRRTYPDLVSTIFRRFSNIGHAVV 120 G GLLH+AN LH+ S W+GALP VL++L+ T RFS IGH V Sbjct: 141 GGLLGLLHRANHSLHLLSASLWLGALPPVLLLLNAMQDPRTRTPALTALMRFSTIGHVAV 200 Query: 121 ALVFLTGLLNTLLILGRLPLDFHFRYQALLTMKILVAGAMMAIAVFNRYVLVPSMRHHRN 180 AL ++G+LN LI G L LD YQ L +KI AM+ IA+ NRYV VP + HRN Sbjct: 201 ALTLVSGMLNVWLITG-LSLDMAASYQQGLALKIAAVAAMVTIAIVNRYVFVPQL--HRN 257 Query: 181 ---ALRQIRRLTLAEILLSWFALMLLAWLGMLQP 211 ALR IR TLAE L A+ L++ G +QP Sbjct: 258 PVQALRAIRIGTLAECALGLIAVALVSAFGTMQP 291 >ref|YP_001561475.1| copper resistance D domain-containing protein [Delftia acidovorans SPH-1] ref|ZP_08506047.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] gb|ABX33090.1| copper resistance D domain protein [Delftia acidovorans SPH-1] gb|EGK70625.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] Length = 308 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 11/216 (5%) Query: 8 GTSIGTAWWTQLVAI--CLLLLGVTSSDRMRLLACIAGGGIMLTSLALTGHAVMHEGWTG 65 GT +G AW +++A+ C+L+ + + +R A A G+ L +LA GH M +G G Sbjct: 91 GTHMGIAWCIRILALVTCVLIAVLRMNSTLRFAAMAASSGVALATLAWAGHGAMDDGVRG 150 Query: 66 LLHQANDVLHVWSVGAWIGALPVVLMILSDQYR--RTYPDLVSTIFRRFSNIGHAVVALV 123 +H A+D+ H+W+ GAW+GAL L++ +++ + +++S F+ IG +VA + Sbjct: 151 YIHLASDITHLWAAGAWVGALIAFLVLAANKPNTGQGSVEILSRTSNGFARIGTVIVAAL 210 Query: 124 FLTGLLNTLLILG-RLPLDFHFRYQALLTMKILVAGAMMAIAVFNRYVLVPSMR------ 176 +TG LN LLI G L F Y LL K+L+ G M+A+A NR+ L PS+ Sbjct: 211 VVTGALNYLLIAGPSLDPLFSTLYGRLLVGKLLLFGGMLALAAANRFRLSPSLEAALRTG 270 Query: 177 HHRNALRQIRRLTLAEILLSWFALMLLAWLGMLQPN 212 +H +A+ ++R+ E L+ L +AWLG+L PN Sbjct: 271 NHAHAVVKLRQSLFTEATLAVLVLASVAWLGILSPN 306 >gb|ADN85632.1| CopD [Achromobacter sp. AO22] Length = 308 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 74/216 (34%), Positives = 121/216 (56%), Gaps = 11/216 (5%) Query: 8 GTSIGTAWWTQLVAI--CLLLLGVTSSDRMRLLACIAGGGIMLTSLALTGHAVMHEGWTG 65 GT +G AW +++A+ C+L+ + + +R A A G+ L +LA GH M +G G Sbjct: 91 GTHMGIAWCIRILALVTCVLIAVLRMNSTLRFAAMAASSGVALATLAWAGHGAMDDGVRG 150 Query: 66 LLHQANDVLHVWSVGAWIGALPVVLMILSDQYR--RTYPDLVSTIFRRFSNIGHAVVALV 123 +H A+D+ H+W+ GAW+GAL L++ +++ + +++S F+ G +VA + Sbjct: 151 YIHLASDITHLWAAGAWVGALIAFLVLAANKPNTGQGSVEILSRTSNGFARXGTVIVAAL 210 Query: 124 FLTGLLNTLLILG-RLPLDFHFRYQALLTMKILVAGAMMAIAVFNRYVLVPSMR------ 176 +TG LN LLI G L F Y LL K+L+ G M+A+A NR+ L PS+ Sbjct: 211 VVTGALNYLLIAGPSLDQLFSTLYGRLLVGKLLLFGGMLALAAANRFRLSPSLEAALRTG 270 Query: 177 HHRNALRQIRRLTLAEILLSWFALMLLAWLGMLQPN 212 +H +A+ ++R+ E L+ L +AWLG+L PN Sbjct: 271 NHAHAVVKLRQSLFTEATLAVLVLASVAWLGILSPN 306 >ref|YP_004213604.1| copper resistance D domain-containing protein [Rahnella sp. Y9602] gb|ADW74477.1| copper resistance D domain-containing protein [Rahnella sp. Y9602] Length = 294 Score = 95.9 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 61/130 (46%), Positives = 83/130 (63%), Gaps = 2/130 (1%) Query: 47 MLTSLALTGHAVMHEGWTGLLHQANDVLHVWSVGAWIGAL-PVVLMILSDQYRRTYPDLV 105 +L S AL GHA MHEG GL+ + N V+H+ S W G L P+++ + + P + Sbjct: 128 LLMSQALVGHAAMHEGLPGLVQRTNHVVHLLSAAYWFGCLLPLLICMGYTRQPSARPYAI 187 Query: 106 STIFRRFSNIGHAVVALVFLTGLLNTLLILGRLPLDFHFRYQALLTMKILVAGAMMAIAV 165 +T+ R FS GHA VALV LTG++NT +IL R P D YQ LL +K+++ G M+A+AV Sbjct: 188 ATLIR-FSLWGHAAVALVILTGIINTAIILQRWPTDMTSLYQCLLVVKVIMVGMMVAVAV 246 Query: 166 FNRYVLVPSM 175 FNRY LVP M Sbjct: 247 FNRYRLVPLM 256