BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3211.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGE61039.1| hypothetical protein RHECNPAF_1260015 [Rhizobium ...   139   1e-31
ref|YP_002545594.1| hypothetical protein Arad_3798 [Agrobacteriu...   121   3e-26
ref|YP_002551066.1| Cu resistance protein [Agrobacterium vitis S...   108   2e-22
ref|YP_002542827.1| hypothetical protein Arad_0134 [Agrobacteriu...   107   6e-22
ref|YP_310255.1| hypothetical protein SSON_1307 [Shigella sonnei...   100   6e-20

>gb|EGE61039.1| hypothetical protein RHECNPAF_1260015 [Rhizobium etli CNPAF512]
          Length = 121

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/121 (56%), Positives = 90/121 (74%)

Query: 52  MKNVKRLLSLVILSSLFLAQFVWAHAHLKTAIPGDQAVVASPAELTLTFSEGLNLKFSGV 111
           M  + R+L    ++++ +A    AHAHLK+++P D+A +ASP EL L+FSE +NLKFSGV
Sbjct: 1   MSRLTRILFFTAIAAIAVAGQALAHAHLKSSVPADKASIASPGELDLSFSEEVNLKFSGV 60

Query: 112 KLSGPDQKEVKLGESMLMDEGKSFMVGIPTRLAPGTYTVQWHALSVDGHKTEGSYSFSVA 171
           K++GPD+K VKLG+ MLMD  K+ MV I  +LA G YTV+WH LS DGHKT GSYSF+V 
Sbjct: 61  KVTGPDKKSVKLGDGMLMDGDKTLMVPISGKLAAGQYTVEWHVLSTDGHKTNGSYSFTVT 120

Query: 172 P 172
           P
Sbjct: 121 P 121


>ref|YP_002545594.1| hypothetical protein Arad_3798 [Agrobacterium radiobacter K84]
 gb|ACM27663.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 122

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/122 (52%), Positives = 83/122 (68%), Gaps = 1/122 (0%)

Query: 52  MKNVKRLLSLVILSSLFLAQFVWAHAHLKTAIPGDQAVVAS-PAELTLTFSEGLNLKFSG 110
           M  +K+LL     +S   A   +AHAHLK+A+P     V   P+EL LTF+EGLNLKFSG
Sbjct: 1   MPQMKKLLIAAFTASFAFAGQAFAHAHLKSAVPATGGTVKEVPSELDLTFTEGLNLKFSG 60

Query: 111 VKLSGPDQKEVKLGESMLMDEGKSFMVGIPTRLAPGTYTVQWHALSVDGHKTEGSYSFSV 170
           V ++GPD+  VK GE+MLM    + M+ +  +LA G YTV+WH LS DGHKT G+YSF+V
Sbjct: 61  VTVTGPDKTVVKTGEAMLMKGNTTLMIPVTDKLAAGKYTVEWHVLSTDGHKTNGTYSFTV 120

Query: 171 AP 172
           AP
Sbjct: 121 AP 122


>ref|YP_002551066.1| Cu resistance protein [Agrobacterium vitis S4]
 gb|ACM38054.1| Cu resistance protein [Agrobacterium vitis S4]
          Length = 125

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 56  KRLLSLVILSSLFLAQFVWAHAHLKTAIPGDQAVVAS-PAELTLTFSEGLNLKFSGVKLS 114
           + L +  +  +L LA   +AHAHL +  P D+A +AS P  + L+F+EGL  KFSGV ++
Sbjct: 8   RTLATFALFGALALAGQAFAHAHLASVAPADKATIASAPKTIDLSFTEGLEPKFSGVDIT 67

Query: 115 GPDQKEVKLGESMLMDEGKSFMVGIPTRLAPGTYTVQWHALSVDGHKTEGSYSFSVAP 172
           GP Q+++K GE+++  +GK   V +   LAPG Y+V+WH LSVDGHK+ G+ SF+V P
Sbjct: 68  GPQQQKIKTGEAVVSKDGKGLSVPLSEPLAPGAYSVEWHVLSVDGHKSNGTTSFTVKP 125


>ref|YP_002542827.1| hypothetical protein Arad_0134 [Agrobacterium radiobacter K84]
 gb|ACM24902.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 95

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 54/95 (56%), Positives = 69/95 (72%), Gaps = 1/95 (1%)

Query: 79  LKTAIPGDQAVV-ASPAELTLTFSEGLNLKFSGVKLSGPDQKEVKLGESMLMDEGKSFMV 137
           +K+A P D++ V  SP+EL LTF+E LNLKFSGVKL+GPD+  VKLG+  L    K  +V
Sbjct: 1   MKSAAPADKSTVTGSPSELDLTFTESLNLKFSGVKLTGPDKTAVKLGDPGLTRNDKVLIV 60

Query: 138 GIPTRLAPGTYTVQWHALSVDGHKTEGSYSFSVAP 172
            + + L  GTYTV+WH LS DGHKT GSY+F+V P
Sbjct: 61  PVSSPLGSGTYTVEWHVLSTDGHKTNGSYTFTVKP 95


>ref|YP_310255.1| hypothetical protein SSON_1307 [Shigella sonnei Ss046]
 gb|AAZ88020.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 124

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 53/113 (46%), Positives = 70/113 (61%), Gaps = 2/113 (1%)

Query: 60  SLVILSSLFLAQFVWAHAHLKTAIPGDQA-VVASPAELTLTFSEGLNLKFSGVKLSGPDQ 118
           +L IL++  +  FVWAHAHL    P   A V A+P  +TL FSEG+   FSG K++GP  
Sbjct: 11  ALAILTTSLVTPFVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKN 70

Query: 119 KEVK-LGESMLMDEGKSFMVGIPTRLAPGTYTVQWHALSVDGHKTEGSYSFSV 170
           + +K L       + K  +V +   L PGTYTV WH +SVDGHKT+G Y+FSV
Sbjct: 71  ENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSV 123