BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3208.p (497 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002944018.1| PepSY-associated TM helix domain-containing ... 483 e-134 ref|YP_001351755.1| hypothetical protein mma_0065 [Janthinobacte... 482 e-134 ref|YP_003278497.1| hypothetical protein CtCNB1_2455 [Comamonas ... 444 e-122 ref|ZP_07044036.1| hypothetical protein CTS44_07545 [Comamonas t... 443 e-122 ref|YP_004417246.1| hypothetical protein PT7_2082 [Pusillimonas ... 438 e-120 >ref|YP_002944018.1| PepSY-associated TM helix domain-containing protein [Variovorax paradoxus S110] gb|ACS18752.1| PepSY-associated TM helix domain protein [Variovorax paradoxus S110] Length = 519 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 262/490 (53%), Positives = 326/490 (66%), Gaps = 7/490 (1%) Query: 8 LRRWTYLTHRWCGVAGCLLMALWFVSGMVMLFIGYPKLTPWDRLAALPALSAAPQ-LPSQ 66 ++R TYL HRW GV C+LMALWFVSG+VMLF+GYPKLTPW+R+ LPAL +P Sbjct: 7 MKRLTYLVHRWTGVGACVLMALWFVSGVVMLFVGYPKLTPWERMRTLPALDPTRCCVPVD 66 Query: 67 VMGDAP-----VSRLVLNAASGQARYIVQRADGNLTSIDASNGVQTEGYSSAAALRSARA 121 V A ++L + G+ Y ++ ADG +DA+ G + +AL +AR Sbjct: 67 VALSATGASGRAQEVILTSVDGRPTYRLRTADGKYLLVDAAEGKPVPPADAGSALDAARL 126 Query: 122 FSGSEDVLYLGSIDEDRWTHSGSLNPHRPLHMVQVGDVAQTLLYVSSRTGEVVMQASRSQ 181 F + Y+G + EDRWTHS L+ HRPLH++++GD A T LYVSS TG+VVM A R+Q Sbjct: 127 FVSGGEGEYVGLVREDRWTHSRGLDAHRPLHVLEMGDAAHTRLYVSSATGQVVMDAPRAQ 186 Query: 182 RMWNYVGAWLHWLYPLKNQSRDPVWSWTVIALSAGCVLVACSGIVLGLWRWRFARPYKSG 241 RMWNYVGAWLHW+Y +++S DP WS VI LSA CVL + +G V G+WRWRF+ YKSG Sbjct: 187 RMWNYVGAWLHWVYMFRDRSVDPGWSLIVIVLSAVCVLTSVTGTVAGIWRWRFSGRYKSG 246 Query: 242 SRSPFAPGWMRWHHLLGLGFAAITLTWIFSGLMSMNPLGIFSPT-QSPDLARYDGATVAQ 300 SRSP+ + WHH+LGL FA+I TWIFSGLMSMNP GIF PD+A+Y G Sbjct: 247 SRSPYREFHLHWHHVLGLAFASIVFTWIFSGLMSMNPAGIFDARGPRPDMAQYRGNVPGT 306 Query: 301 HHLDRTPTDILQALQRDGFQAVELEWKNLGGHGFVLARDAADGTRIVTTGAQGLLVQRQW 360 LD L+ L+ F A ELEW+ L G F+LAR+AA+ TR+V V +W Sbjct: 307 ARLDIPVAQALRLLEASRFAASELEWRVLDGRPFILARNAANDTRLVVQENDRYRVLDRW 366 Query: 361 PQAMLQEAAAMLLPAKLMQAELLDGGDAYYYRRAPEAMMGGAERRLPVLRLRFDDAGSTL 420 P+A L AA LL A ++ E L+ DAYYY R PEAMMG AERRLPV RLRF D T Sbjct: 367 PRADLAHAARQLLAAPILTQEELEHYDAYYYERQPEAMMGAAERRLPVARLRFGDPHDTW 426 Query: 421 VYIDPATGQIALTADRAQRVGRWLFSFLHSWDLHFMLAAAGLREAVLILLSLGGLGLSLT 480 VY+D TG +AL+ADR+QR GRWLFSFLHSWDL ML A LR+AVLI+ SLGGL +S+T Sbjct: 427 VYLDARTGDVALSADRSQRAGRWLFSFLHSWDLPAMLRAEALRDAVLIVFSLGGLLVSVT 486 Query: 481 GIVIAVRRVN 490 GIVI RRV+ Sbjct: 487 GIVIGYRRVS 496 >ref|YP_001351755.1| hypothetical protein mma_0065 [Janthinobacterium sp. Marseille] gb|ABR90922.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 506 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 254/492 (51%), Positives = 324/492 (65%), Gaps = 7/492 (1%) Query: 9 RRWTYLTHRWCGVAGCLLMALWFVSGMVMLFIGYPKLTPWDRLAALPALSA----APQLP 64 +R TYL HRW GVA C+LMALWF+SG+VMLF+GYPKLTPW+RL ALPAL P Sbjct: 8 KRLTYLFHRWTGVAACVLMALWFISGIVMLFVGYPKLTPWERLQALPALQTQDCCVPLDK 67 Query: 65 SQVMGDAP--VSRLVLNAASGQARYIVQRADGNLTSIDASNGVQTEGYSSAAALRSARAF 122 AP V +VL + Y ++ G+ IDA +G + AAL ARAF Sbjct: 68 VLAHSKAPGAVQEIVLTSIRQHPYYRLREGKGSYLIIDAHSGKPAPAMDTEAALAGARAF 127 Query: 123 SGSEDVLYLGSIDEDRWTHSGSLNPHRPLHMVQVGDVAQTLLYVSSRTGEVVMQASRSQR 182 D YLG++ EDRWTH+ SL+ HRPLH VQ+ D A +LLY+S TG+VVM A R+QR Sbjct: 128 IPHADAHYLGTVQEDRWTHARSLDVHRPLHQVQMDDGAHSLLYLSDATGQVVMDAPRAQR 187 Query: 183 MWNYVGAWLHWLYPLKNQSRDPVWSWTVIALSAGCVLVACSGIVLGLWRWRFARPYKSGS 242 MWNYVGAWL+WLY +++ DPVWSW VI LSA + A +G + G+WRWRF YKSG+ Sbjct: 188 MWNYVGAWLYWLYMFRDKPVDPVWSWIVIVLSAIGTVTAVTGTLAGIWRWRFRGRYKSGA 247 Query: 243 RSPFAPGWMRWHHLLGLGFAAITLTWIFSGLMSMNPLGIFSPT-QSPDLARYDGATVAQH 301 R+P+ ++ WHH++GL FAAI TWIFSGLMSMNPLG+F + P+ A Y GAT Sbjct: 248 RTPYREAYLHWHHIIGLSFAAIIFTWIFSGLMSMNPLGVFDARGEKPNSAAYRGATPGAM 307 Query: 302 HLDRTPTDILQALQRDGFQAVELEWKNLGGHGFVLARDAADGTRIVTTGAQGLLVQRQWP 361 HL T L L F+A E+EW+ L G ++LAR+AA+ TR++ V+ +W Sbjct: 308 HLPLNATQALDLLNDVHFRATEMEWRVLDGRPYLLARNAANATRLIVNEGGNYKVRERWS 367 Query: 362 QAMLQEAAAMLLPAKLMQAELLDGGDAYYYRRAPEAMMGGAERRLPVLRLRFDDAGSTLV 421 L +AA LLPA ++ ++L+ D YYY R EAMMG AERRLP LR+RFD+ T V Sbjct: 368 DVELLQAAKRLLPAPILDHQVLEQYDTYYYGRQQEAMMGAAERRLPALRIRFDETHQTWV 427 Query: 422 YIDPATGQIALTADRAQRVGRWLFSFLHSWDLHFMLAAAGLREAVLILLSLGGLGLSLTG 481 ++DP TG + ++D AQRVGRWLF+FLHSWDL ML A LR+A+LILLSLGG L +TG Sbjct: 428 HLDPFTGDVESSSDNAQRVGRWLFAFLHSWDLPPMLQAGALRDAILILLSLGGFALCITG 487 Query: 482 IVIAVRRVNVKL 493 IVI RR+ + L Sbjct: 488 IVIGWRRLRIWL 499 >ref|YP_003278497.1| hypothetical protein CtCNB1_2455 [Comamonas testosteroni CNB-2] gb|ACY33201.1| hypothetical protein CtCNB1_2455 [Comamonas testosteroni CNB-2] Length = 505 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 239/490 (48%), Positives = 315/490 (64%), Gaps = 7/490 (1%) Query: 9 RRWTYLTHRWCGVAGCLLMALWFVSGMVMLFIGYPKLTPWDRLAALPALSAAPQ-LP--- 64 +R +L HRW GV C+LMALW SG+VMLF+GYPKL P +RL ALP+LS LP Sbjct: 8 KRLVFLVHRWTGVGACVLMALWLFSGVVMLFVGYPKLLPTERLQALPSLSIGQSYLPVEA 67 Query: 65 --SQVMGDAPVSRLVLNAASGQARYIVQRADGNLTSIDASNGVQTEGYSSAAALRSARAF 122 Q V ++VL +G+ Y ++ ADG L +DA GV + AAALRSA+AF Sbjct: 68 ALKQSQSADKVQQIVLTTIAGRPSYRLKEADGTLRVVDAGTGVVAQPPDDAAALRSAQAF 127 Query: 123 SGSEDVLYLGSIDEDRWTHSGSLNPHRPLHMVQVGDVAQTLLYVSSRTGEVVMQASRSQR 182 + G +DRWTHS SL+PHRPL V + D A +LLY+SS T EVVM R QR Sbjct: 128 LSGANGALQGRTQDDRWTHSASLDPHRPLIKVLMDDSASSLLYISSTTAEVVMDIPRHQR 187 Query: 183 MWNYVGAWLHWLYPLKNQSRDPVWSWTVIALSAGCVLVACSGIVLGLWRWRFARPYKSGS 242 WNYVGAWLHW+Y ++ S+DPVWSW VI LSA + +G ++G+WRWRF YKSG+ Sbjct: 188 YWNYVGAWLHWVYMVREGSKDPVWSWLVIGLSALGTVSGIAGALVGIWRWRFNGRYKSGA 247 Query: 243 RSPFAPGWMRWHHLLGLGFAAITLTWIFSGLMSMNPLGIFSPT-QSPDLARYDGATVAQH 301 R+P+ MRWHH+ GL F A+ + WIFSGLMSMNPLGIFSP PDL Y A + + Sbjct: 248 RTPYREFQMRWHHITGLVFGAMMICWIFSGLMSMNPLGIFSPQGPRPDLRAYQHAGLGSN 307 Query: 302 HLDRTPTDILQALQRDGFQAVELEWKNLGGHGFVLARDAADGTRIVTTGAQGLLVQRQWP 361 T + L L +GF E+EWK L G ++LA + TRIV+ V+R+ Sbjct: 308 PFRLTTHEALTLLSAEGFDTREVEWKVLDGQPYLLAFNGLGETRIVSASLAAPQVERELD 367 Query: 362 QAMLQEAAAMLLPAKLMQAELLDGGDAYYYRRAPEAMMGGAERRLPVLRLRFDDAGSTLV 421 ++ L++AA L P+ + + LL+ DAYYYRR +M A R LPVLR++F+D G+T+V Sbjct: 368 RSKLEQAAKKLFPSAIRSSTLLNEYDAYYYRRGEASMYSAAARDLPVLRMQFEDPGNTIV 427 Query: 422 YIDPATGQIALTADRAQRVGRWLFSFLHSWDLHFMLAAAGLREAVLILLSLGGLGLSLTG 481 YI P +G + L+ D+ QR GRWLF+FLHSWDL +ML A R+A+L+LLS+G L L+LTG Sbjct: 428 YISPYSGDVVLSLDQRQRTGRWLFNFLHSWDLPWMLRHAWPRDAILVLLSIGTLALALTG 487 Query: 482 IVIAVRRVNV 491 IV+ RR+ + Sbjct: 488 IVLGYRRLKL 497 >ref|ZP_07044036.1| hypothetical protein CTS44_07545 [Comamonas testosteroni S44] gb|EFI62345.1| hypothetical protein CTS44_07545 [Comamonas testosteroni S44] Length = 505 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 238/490 (48%), Positives = 312/490 (63%), Gaps = 7/490 (1%) Query: 9 RRWTYLTHRWCGVAGCLLMALWFVSGMVMLFIGYPKLTPWDRLAALPALSAAPQ-LP--- 64 +R +L HRW GVA C+LMALW SG++MLF+GYPKL P +RL ALP LS LP Sbjct: 8 KRLVFLVHRWTGVAACVLMALWLFSGVMMLFVGYPKLLPTERLQALPFLSTGQSYLPVEA 67 Query: 65 --SQVMGDAPVSRLVLNAASGQARYIVQRADGNLTSIDASNGVQTEGYSSAAALRSARAF 122 Q V ++VL +G+ Y ++ ADG L +DA G+ + AA LRSA+AF Sbjct: 68 ALKQSQSADRVQQIVLTTIAGRPSYRLKEADGTLRVVDAGTGIVAQPPDDAATLRSAKAF 127 Query: 123 SGSEDVLYLGSIDEDRWTHSGSLNPHRPLHMVQVGDVAQTLLYVSSRTGEVVMQASRSQR 182 + G +DRWTHS SL+PHRPL V + D A +LLY+SS T EVVM R QR Sbjct: 128 LSGANGALQGCTQDDRWTHSASLDPHRPLIKVLMDDSASSLLYISSTTAEVVMDVPRHQR 187 Query: 183 MWNYVGAWLHWLYPLKNQSRDPVWSWTVIALSAGCVLVACSGIVLGLWRWRFARPYKSGS 242 WNYVGAWLHW+Y ++ S+DPVWSW VI LSA + +G ++G+WRWRF YKSG+ Sbjct: 188 YWNYVGAWLHWVYMVREGSKDPVWSWLVIGLSALGTVSTIAGALVGIWRWRFNGRYKSGA 247 Query: 243 RSPFAPGWMRWHHLLGLGFAAITLTWIFSGLMSMNPLGIFSPT-QSPDLARYDGATVAQH 301 R+P+ MRWHH+ GL F A+ + WIFSGLMSMNPLGIFSP PDL Y A + Sbjct: 248 RTPYREFQMRWHHITGLVFGAMMICWIFSGLMSMNPLGIFSPQGPRPDLHAYQHAGPGSN 307 Query: 302 HLDRTPTDILQALQRDGFQAVELEWKNLGGHGFVLARDAADGTRIVTTGAQGLLVQRQWP 361 T + L L +GF E+EWK L G ++LA + TRIV+ V+R+ Sbjct: 308 PFRLTTHEALTLLSAEGFDTREVEWKVLDGQPYLLAFNGVGQTRIVSASLAAPQVERELD 367 Query: 362 QAMLQEAAAMLLPAKLMQAELLDGGDAYYYRRAPEAMMGGAERRLPVLRLRFDDAGSTLV 421 ++ L++AA L P + LL+ DAYYYRR +M A R LPVLR++F+D G+T+V Sbjct: 368 RSKLEQAAQKLFPFAIRSTTLLNEYDAYYYRRGEASMYSAAARDLPVLRMQFEDPGNTIV 427 Query: 422 YIDPATGQIALTADRAQRVGRWLFSFLHSWDLHFMLAAAGLREAVLILLSLGGLGLSLTG 481 YI P +G + L+ D++QR GRWLF+FLHSWDL +ML A R+A+L+LLS+G L L+LTG Sbjct: 428 YISPYSGDVVLSLDQSQRTGRWLFNFLHSWDLPWMLRHAWPRDAILVLLSIGTLALALTG 487 Query: 482 IVIAVRRVNV 491 IV+ RR+ V Sbjct: 488 IVLGYRRLKV 497 >ref|YP_004417246.1| hypothetical protein PT7_2082 [Pusillimonas sp. T7-7] gb|AEC20622.1| hypothetical protein PT7_2082 [Pusillimonas sp. T7-7] Length = 504 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 249/495 (50%), Positives = 319/495 (64%), Gaps = 8/495 (1%) Query: 9 RRWTYLTHRWCGVAGCLLMALWFVSGMVMLFIGYPKLTPWDRLAALPALSAAPQ-LPSQV 67 +R TYL HRW GVAGCLLM LWF+SG+VML++GYPKLTPW+RL LPAL A +P+ + Sbjct: 8 KRLTYLVHRWTGVAGCLLMVLWFISGVVMLYVGYPKLTPWERLGVLPALDATQCCMPADL 67 Query: 68 M-----GDAPVSRLVLNAASGQARYIVQRADGNLTSIDASNGVQTEGYSSAAALRSARAF 122 +P+ + L + GQ Y+++ G +DA G AAL A+AF Sbjct: 68 ALARGRMQSPLQSIKLTSVRGQPHYLIREQGGAYHVLDARTGQLASRVDEQAALDEAQAF 127 Query: 123 SGSEDVLYLGSIDEDRWTHSGSLNPHRPLHMVQVGDVAQTLLYVSSRTGEVVMQASRSQR 182 S V Y G + EDRWTHS L+ HRPLH+VQV +YVSS TG+ VM A SQ+ Sbjct: 128 MPSAHVHYSGLVHEDRWTHSRGLDVHRPLHVVQVDGEHPAAVYVSSATGQTVMDAPLSQQ 187 Query: 183 MWNYVGAWLHWLYPLKNQSRDPVWSWTVIALSAGCVLVACSGIVLGLWRWRFARPYKSGS 242 WNYVGAWLHWLY + QS DPVW+W VI +SA + A +GI +GLWRWRF+ YKSG+ Sbjct: 188 RWNYVGAWLHWLYMFRFQSTDPVWNWLVIVMSAAGTVSAITGICVGLWRWRFSGRYKSGA 247 Query: 243 RSPFAPGWMRWHHLLGLGFAAITLTWIFSGLMSMNPLGIFSPT-QSPDLARYDGATVAQH 301 R+P+ WMRWHH++GL FA TWI SGLMSMNPLG+F+ + P + Y G Sbjct: 248 RTPYRAAWMRWHHIIGLLFAGFVFTWILSGLMSMNPLGLFNAAGERPSVVAYQGGLPRAQ 307 Query: 302 HLDRTPTDILQALQRDGFQAVELEWKNLGGHGFVLARDAADGTRIVTTGAQG-LLVQRQW 360 + I+ LQ+ G AVE+EW+ L G ++LARDAA +R+VT+ G L ++ W Sbjct: 308 GILADSAVIITRLQKQGLDAVEMEWRVLAGQPYILARDAAGRSRLVTSSTAGELQIREHW 367 Query: 361 PQAMLQEAAAMLLPAKLMQAELLDGGDAYYYRRAPEAMMGGAERRLPVLRLRFDDAGSTL 420 A + +AA LLP ++ + + D+YYY R PEAM G AERRLP LRL FDD G T Sbjct: 368 AVADILQAAPQLLPYPVVGQQHMTQYDSYYYSRHPEAMNGAAERRLPALRLDFDDPGLTR 427 Query: 421 VYIDPATGQIALTADRAQRVGRWLFSFLHSWDLHFMLAAAGLREAVLILLSLGGLGLSLT 480 VYID TG +A++ DR QR GRWLF+FLHSWD MLAA R+ VLILLSLGGL +S T Sbjct: 428 VYIDLHTGDVAISLDRRQRTGRWLFNFLHSWDTPGMLAATVWRDVVLILLSLGGLLVSAT 487 Query: 481 GIVIAVRRVNVKLKS 495 G+VIA R+ + +K+ Sbjct: 488 GVVIAYARLRIWMKA 502