BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3204.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002800920.1| LysR family transcriptional regulator [Azoto...   193   8e-48
gb|EGH67441.1| LysR family transcriptional regulator [Pseudomona...   191   3e-47
ref|YP_002800381.1| LysR family transcriptional regulator [Azoto...   189   1e-46
ref|ZP_04762155.1| transcriptional regulator, LysR family [Acido...   189   1e-46
gb|EGH62694.1| putative transcriptional regulator protein, LysR ...   189   2e-46

>ref|YP_002800920.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gb|ACO79945.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
          Length = 297

 Score =  193 bits (490), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 91/141 (64%), Positives = 110/141 (78%)

Query: 1   MIAVRIGPDLRMAVVGSESYLAGKSRPQSPADLAGHTCINLRLPTHGGLMAWEFERDGHL 60
           MIAVRIGPDLR+A+VGS +Y A +S P++P DLAGH CINLRLPTHGGL+ W+F +DG  
Sbjct: 155 MIAVRIGPDLRIAIVGSPAYFATRSEPETPMDLAGHNCINLRLPTHGGLLPWDFGKDGKE 214

Query: 61  MKARVEGQWTFNSSTPILRAALSGFGLAYLPEDMVAPHVQSGALKRVMKSWTPTFPGYHL 120
           + ARV GQWTFNSS PILRAAL+G GLA+LPEDM   H+ +  L RV+  W   FPGYHL
Sbjct: 215 IVARVGGQWTFNSSEPILRAALAGHGLAFLPEDMALEHIAAQRLVRVLDDWCQPFPGYHL 274

Query: 121 YYASRRHSSPAFRLLVEALRY 141
           YY SRR SS A  +++EALR+
Sbjct: 275 YYPSRRQSSRALAVVIEALRH 295


>gb|EGH67441.1| LysR family transcriptional regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 297

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/141 (63%), Positives = 107/141 (75%)

Query: 1   MIAVRIGPDLRMAVVGSESYLAGKSRPQSPADLAGHTCINLRLPTHGGLMAWEFERDGHL 60
           MIAV IGP LR+AVVGS  Y   +  P+ P DLA H CINLRLPTHG LM W+FE+DGH 
Sbjct: 155 MIAVPIGPSLRIAVVGSPEYFKQRQIPREPRDLAAHNCINLRLPTHGSLMQWDFEKDGHE 214

Query: 61  MKARVEGQWTFNSSTPILRAALSGFGLAYLPEDMVAPHVQSGALKRVMKSWTPTFPGYHL 120
           +KARVEGQWTFNSS PILRAA++G GL +LPEDMVA  +  G+L RV++ W   F GYH+
Sbjct: 215 LKARVEGQWTFNSSVPILRAAVAGCGLGFLPEDMVAKELADGSLLRVLEDWCQPFAGYHI 274

Query: 121 YYASRRHSSPAFRLLVEALRY 141
           YY +RR  S AF ++V+ALRY
Sbjct: 275 YYPNRREHSSAFGVVVDALRY 295


>ref|YP_002800381.1| LysR family transcriptional regulator [Azotobacter vinelandii DJ]
 gb|ACO79406.1| Transcriptional regulator LysR family protein [Azotobacter
           vinelandii DJ]
          Length = 297

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 87/141 (61%), Positives = 110/141 (78%)

Query: 1   MIAVRIGPDLRMAVVGSESYLAGKSRPQSPADLAGHTCINLRLPTHGGLMAWEFERDGHL 60
           MIAVRIGPDLR+AVVGS  Y A +  P +P DLAGH CINLRLPTHGGL+ W+F +DG  
Sbjct: 155 MIAVRIGPDLRIAVVGSPGYFAQRPVPATPHDLAGHNCINLRLPTHGGLLPWDFAKDGQE 214

Query: 61  MKARVEGQWTFNSSTPILRAALSGFGLAYLPEDMVAPHVQSGALKRVMKSWTPTFPGYHL 120
           +K RV GQWTFN+S+ I++AAL+G+GLA++PEDMV  H+ +G L RV+  W   +PGYHL
Sbjct: 215 VKFRVGGQWTFNNSSSIVKAALAGYGLAFVPEDMVLEHIDAGRLIRVLDDWCDPYPGYHL 274

Query: 121 YYASRRHSSPAFRLLVEALRY 141
           YY +RR SS A  ++VEALR+
Sbjct: 275 YYPNRRQSSRALGVIVEALRH 295


>ref|ZP_04762155.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gb|EER61018.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 298

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 86/143 (60%), Positives = 109/143 (76%)

Query: 1   MIAVRIGPDLRMAVVGSESYLAGKSRPQSPADLAGHTCINLRLPTHGGLMAWEFERDGHL 60
           MIAVRIGPDLRMAVVGS +Y + +++P++P DLA H CIN RLPT+GG+ AWE       
Sbjct: 155 MIAVRIGPDLRMAVVGSPAYFSARNQPRNPHDLADHNCINRRLPTYGGIYAWELSNGRQE 214

Query: 61  MKARVEGQWTFNSSTPILRAALSGFGLAYLPEDMVAPHVQSGALKRVMKSWTPTFPGYHL 120
           +  RVEGQW FNSS+P+LRAAL G GLA+LPEDMV  H+ +G L RV+ +W   FPGYHL
Sbjct: 215 LNVRVEGQWVFNSSSPVLRAALDGCGLAFLPEDMVLEHIAAGRLIRVLDAWCQPFPGYHL 274

Query: 121 YYASRRHSSPAFRLLVEALRYPS 143
           YYA+RR  SP  +++VEALR+ +
Sbjct: 275 YYANRRQFSPVLQVIVEALRHSA 297


>gb|EGH62694.1| putative transcriptional regulator protein, LysR family
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 298

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/141 (59%), Positives = 107/141 (75%)

Query: 1   MIAVRIGPDLRMAVVGSESYLAGKSRPQSPADLAGHTCINLRLPTHGGLMAWEFERDGHL 60
           MIA RIGPD+R++VVGS +Y  G++RP++P DL  H C NLRLPT+GGL  WEF +DG  
Sbjct: 155 MIATRIGPDMRLSVVGSPAYFEGRNRPETPRDLTSHRCNNLRLPTNGGLYTWEFTKDGET 214

Query: 61  MKARVEGQWTFNSSTPILRAALSGFGLAYLPEDMVAPHVQSGALKRVMKSWTPTFPGYHL 120
           +  RV GQ TFN   P+L AAL GFGL+Y+P D+VA H+ +G L  V++ W+PTF G+HL
Sbjct: 215 LNVRVTGQVTFNGVYPLLDAALDGFGLSYIPHDLVAAHIDAGRLIHVLEDWSPTFAGFHL 274

Query: 121 YYASRRHSSPAFRLLVEALRY 141
           YY SRR +SPAF LL+EALRY
Sbjct: 275 YYPSRRQASPAFALLLEALRY 295