BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3203.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_04761375.1| transcriptional regulator, LysR family [Acido...   170   6e-41
ref|ZP_04762160.1| transcriptional regulator, LysR family [Acido...   170   7e-41
ref|YP_004611652.1| LysR family transcriptional regulator [Mesor...   167   7e-40
gb|AEG71239.1| transcriptional regulator of methionine biosynthe...   165   2e-39
emb|CCA82134.1| putative transcriptional regulator, LysR family ...   165   2e-39

>ref|ZP_04761375.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gb|EER61770.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 303

 Score =  170 bits (430), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 89/116 (76%), Positives = 104/116 (89%)

Query: 1   MPRENYNDLLAFLAIAREGSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSV 60
           M   NYNDLLAF+A+ARE SFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVS 
Sbjct: 1   MAGANYNDLLAFMAVAREQSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSP 60

Query: 61  TQAGERLVESVGPRFEEIESELAALGQLKEKPAGSIRLTSAEHAANTVLWPKLIKL 116
           T AGERL+++V PRF+EIE+EL A+G+L +KPAG++R+T+ EHAA TVLWPKL K+
Sbjct: 61  TAAGERLLQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKM 116


>ref|ZP_04762160.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
 gb|EER61023.1| transcriptional regulator, LysR family [Acidovorax delafieldii 2AN]
          Length = 300

 Score =  170 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/116 (77%), Positives = 104/116 (89%)

Query: 1   MPRENYNDLLAFLAIAREGSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSV 60
           M   NYNDLLAF+A+ARE SFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVS 
Sbjct: 1   MAGANYNDLLAFMAVAREKSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSP 60

Query: 61  TQAGERLVESVGPRFEEIESELAALGQLKEKPAGSIRLTSAEHAANTVLWPKLIKL 116
           T AGERL+++V PRF+EIE+EL A+G+L +KPAG++R+T+ EHAA TVLWPKL KL
Sbjct: 61  TVAGERLMQNVAPRFQEIEAELTAIGELSDKPAGTVRITTTEHAARTVLWPKLAKL 116


>ref|YP_004611652.1| LysR family transcriptional regulator [Mesorhizobium opportunistum
           WSM2075]
 gb|AEH87558.1| transcriptional regulator, LysR family [Mesorhizobium opportunistum
           WSM2075]
          Length = 297

 Score =  167 bits (422), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 87/116 (75%), Positives = 102/116 (87%)

Query: 1   MPRENYNDLLAFLAIAREGSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSV 60
           MPR+N N+L AFLA+ARE SFTRAAAQLGVSQSALSHT+RALE RLGVRLLTRTTRSVS 
Sbjct: 1   MPRDNLNELTAFLAVAREKSFTRAAAQLGVSQSALSHTVRALEERLGVRLLTRTTRSVSP 60

Query: 61  TQAGERLVESVGPRFEEIESELAALGQLKEKPAGSIRLTSAEHAANTVLWPKLIKL 116
           T+AGER+V SVGPR +EIE+ELAAL  L+EKPAG+IR+T+ EH+A+ +LWP L K 
Sbjct: 61  TEAGERMVRSVGPRLDEIEAELAALSALREKPAGTIRITAGEHSADVILWPALAKF 116


>gb|AEG71239.1| transcriptional regulator of methionine biosynthesis (lysr family)
           [Ralstonia solanacearum Po82]
          Length = 297

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/116 (72%), Positives = 104/116 (89%)

Query: 1   MPRENYNDLLAFLAIAREGSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSV 60
           M RENY+DLLAF A+ARE SFTRAAAQLGVS SALSHTIRALE RLG+RLLTRTTRSVS 
Sbjct: 1   MARENYHDLLAFFAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSP 60

Query: 61  TQAGERLVESVGPRFEEIESELAALGQLKEKPAGSIRLTSAEHAANTVLWPKLIKL 116
           T+AGERL++SV PRFEEI++ELAA+G+L++ P+G+IR+T+ ++A  TVLWP+L K+
Sbjct: 61  TEAGERLMQSVAPRFEEIDAELAAVGELRDTPSGTIRITATDYAIRTVLWPRLSKV 116


>emb|CCA82134.1| putative transcriptional regulator, LysR family [blood disease
           bacterium R229]
          Length = 297

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/116 (71%), Positives = 104/116 (89%)

Query: 1   MPRENYNDLLAFLAIAREGSFTRAAAQLGVSQSALSHTIRALEARLGVRLLTRTTRSVSV 60
           M RENY+DLLAFLA+ARE SFTRAAAQLGVS SALSHTIRALE RLG+RLLTRTTRSVS 
Sbjct: 1   MARENYHDLLAFLAVARERSFTRAAAQLGVSPSALSHTIRALETRLGIRLLTRTTRSVSP 60

Query: 61  TQAGERLVESVGPRFEEIESELAALGQLKEKPAGSIRLTSAEHAANTVLWPKLIKL 116
           T+AGERL++S+ PRFEEI++ELAA+G+L++ P+G+IR+T+ ++   T+LWPKL K+
Sbjct: 61  TEAGERLLQSIAPRFEEIDAELAAVGELRDTPSGTIRITATDYTIRTLLWPKLSKV 116