BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3196.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777807.1| hypothetical protein Hsero_4433 [Herbaspiril...   206   8e-52

>ref|YP_003777807.1| hypothetical protein Hsero_4433 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65899.1| hypothetical protein Hsero_4433 [Herbaspirillum seropedicae SmR1]
          Length = 173

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 129/160 (80%)

Query: 1   MIISTSRGLRFSLLVTLAALISACATPVRETTPCTIQQQHARCVAVPVHDDEHEDEAKAL 60
           M+  T R +R SLLV  A L+SACA P R++ PCTI QQ + CVAVP+H+D HEDEAKAL
Sbjct: 1   MVTDTRRSVRVSLLVASAILMSACAAPARDSVPCTILQQSSTCVAVPLHEDIHEDEAKAL 60

Query: 61  TPAPEGYGYLYLTRPYSQQRSVKAKLFVNDVFLAELGPMSFARIKMPQGSYRIKVTAEKT 120
            PAPEG+GYLY+TRPYSQQRS+K+++FV+D   AELGP +FARIK+  G++ IK+TAE++
Sbjct: 61  APAPEGWGYLYVTRPYSQQRSIKSRIFVDDALHAELGPKTFARIKLRPGTHTIKLTAEES 120

Query: 121 EDVSISVDMKKEAFVEYQIAEHFFSTEPSIKLVSKERARE 160
           E VSI V+M KEAF+EYQI EH FS EP+IK VS+ RARE
Sbjct: 121 EAVSIPVEMAKEAFLEYQIVEHLFSVEPTIKPVSRGRARE 160