BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3192.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspiril... 233 4e-59 ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspiril... 224 2e-56 ref|XP_002540334.1| conserved hypothetical protein [Ricinus comm... 210 2e-52 ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspiril... 184 2e-44 ref|YP_368342.1| hypothetical protein Bcep18194_A4101 [Burkholde... 117 2e-24 >ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspirillum seropedicae SmR1] gb|ADJ63187.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 113/257 (43%), Positives = 162/257 (63%), Gaps = 4/257 (1%) Query: 39 IAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYVLG 98 + IRVNQ+ +L +KYP Q E+ K+P G+ FY+ DW S+V+ H VT+PY+L Sbjct: 5 VEIRVNQSGVDLVKKYPDQFEITKYPQGIQFYAADWGSVPNGSVVLATSAHNVTLPYILS 64 Query: 99 ISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGAPR 158 +G DD + ENI W+I AG+T +++ HD+AR+ FF L+QS+R+AGW AI PR Sbjct: 65 ATGNDDPNFASENIINWNINAGITEADVIAHDDARKRFFGLLQSLRNAGWVRAIRLSEPR 124 Query: 159 LKGKDSLRYVQAA-LVGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRTD 217 LKGK +L Y Q + LDPDYV LE+WM L ++W Y+DHAY +++TRD ++TD Sbjct: 125 LKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSITRDPSKTD 184 Query: 218 IHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSARLPEALALEQADRQQKEAEWQRK 277 + +PGAYF+ Y L ++NE+ R+ VGP R WKT LP L RQ E +++ Sbjct: 185 VTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKT---ELPAVLPQLAKSRQAAEETLKKE 241 Query: 278 GARIDRAYQDPPVPAIA 294 ID Y+DPP+P ++ Sbjct: 242 NITIDETYRDPPLPDLS 258 >ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspirillum seropedicae SmR1] gb|ADJ62980.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 113/255 (44%), Positives = 156/255 (61%), Gaps = 3/255 (1%) Query: 37 EGIAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYV 96 E I I NQ+ L +YP Q+++ P +NFYS+DWPR+AL ++ + +H I V Sbjct: 3 ETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIKDV 62 Query: 97 LGISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGA 156 LGISG+DD + E+I EWH+YAGL E + HD ARQ F L+Q IR AGW+ + RG Sbjct: 63 LGISGSDDPNFASEDIVEWHVYAGLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGRGH 122 Query: 157 PRLKGKDSLRYVQAALVGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRT 216 PRLKG +LRY ++ LDPDY L+EWM + + W F ++AY + LTRD R Sbjct: 123 PRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQRK 182 Query: 217 DIHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSARLPEALALEQADRQQKEAEWQR 276 D+++ GAYF+ L NEE R VGP R +W+ A LPE L L + DR++ E ++ Sbjct: 183 DVNKKGAYFVKLSLNGANEEARRIVGPARRADWQ---AALPEELKLLKQDRERAEQVLRQ 239 Query: 277 KGARIDRAYQDPPVP 291 +G ID +YQDP +P Sbjct: 240 QGVAIDESYQDPKLP 254 >ref|XP_002540334.1| conserved hypothetical protein [Ricinus communis] gb|EEF22049.1| conserved hypothetical protein [Ricinus communis] Length = 228 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 106/229 (46%), Positives = 141/229 (61%), Gaps = 4/229 (1%) Query: 66 GLNFYSMDWPRDALASIVIGQPDHAVTIPYVLGISGTDDTGYPEENISEWHIYAGLTAPE 125 G+NFY+ W + + S+ I TIPYVLG+ G +++ E + ++ I+AG+T P+ Sbjct: 3 GVNFYTAQWAQQSPGSVTIQPGKFQFTIPYVLGLQGVEESRASAEGLVQYEIFAGITGPD 62 Query: 126 LMGHDEARQAFFRLIQSIRDAGWRNAISRGAPRLKGKDSLRYV-QAALVGCLDPDYVPDL 184 L+GHDEARQ FF L+Q IR AGW I R PR++G+ L YV +++ LDPDY P L Sbjct: 63 LIGHDEARQKFFALLQGIRKAGWTPFIDRDDPRIRGRQRLEYVLKSSSASSLDPDYEPTL 122 Query: 185 EEWMKLGAGSSWCFYADHAYFRINLTRDQNRTDIHQPGAYFLTYDLVAENEEMRAYVGPQ 244 EWM+L S W FYADHAY + R+ + D +PGAY LTY L++EN+ R YV P+ Sbjct: 123 TEWMQLEDLSRWTFYADHAYLSVAFKREASLRDPDKPGAYLLTYTLMSENQHFRTYVAPK 182 Query: 245 NRREWKTLSARLPEALALEQADRQQKEAEWQRKGARIDRAYQDPPVPAI 293 +R WK L LP L QA RQQ E W+ KGA ID Y DPP P + Sbjct: 183 DRDRWKEL---LPATLKELQAQRQQAEKAWRSKGASIDEGYVDPPAPRL 228 >ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspirillum seropedicae SmR1] gb|ADJ64402.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 97/255 (38%), Positives = 142/255 (55%), Gaps = 6/255 (2%) Query: 39 IAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYVLG 98 IAIR N+ + ++ P ++V K PAG+NFY M W L + I +V IP V Sbjct: 32 IAIRANEPSKAFIDQAPSAIKVIKQPAGINFYLMQWGGAQLGDVHIHHGAASVQIPDVRV 91 Query: 99 ISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGAPR 158 + G +D +PEE+I+ W IY GL++ +M H++AR + ++ ++ WR I PR Sbjct: 92 LQGEEDAQFPEEHIANWKIYIGLSSGSVMSHEQARNKIYAILAALEKKAWRVLIDPDDPR 151 Query: 159 LKGKDSLRYV--QAALVGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRT 216 L GK+ YV Q+ G L+ DYVP L+EWM+L S W FYAD + + + RDQ Sbjct: 152 LTGKERFDYVTGQSPASG-LNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRDQGAL 210 Query: 217 DIHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSARLPEALALEQADRQQKEAEWQR 276 D+ +PG Y L +L+ ENE RA+V P+ R W+ LP R Q+EA+ Sbjct: 211 DVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRN---ELPSLWKALNERRTQREAQALV 267 Query: 277 KGARIDRAYQDPPVP 291 G +I+ +YQDPP+P Sbjct: 268 AGKKINTSYQDPPLP 282 >ref|YP_368342.1| hypothetical protein Bcep18194_A4101 [Burkholderia sp. 383] gb|ABB07698.1| hypothetical protein Bcep18194_A4101 [Burkholderia sp. 383] Length = 294 Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats. Identities = 87/272 (31%), Positives = 118/272 (43%), Gaps = 11/272 (4%) Query: 26 SERDARDGFVREGIAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIG 85 S D R+G IR+ D + V HP+G +FY DW R L ++ Sbjct: 29 STLDNRNGMNSSLTVIRLGDPKDS--DLNGPGASVDNHPSGTSFYQHDWMRGNLGTVKFM 86 Query: 86 QPDHAVTIPYVLGISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRD 145 Q H + VL G+ D P I W+I G++ + H+ A +L Q +R Sbjct: 87 QGTHGFVLDNVLSAVGSADKDVPG-GIYTWNINFGVSPEQADTHEAALARMTKLFQDLRA 145 Query: 146 AGWRNAISRGAPRLKGKDSLRYVQAALVGCLDPDYVPDLEEW-MKLGAGSSWCFYADHAY 204 GW I PRL GK + Y++ + LD Y P +EEW + W FYAD AY Sbjct: 146 NGWVRYIDVSNPRLTGKQAWDYMKTYSIYSLDSGYTPTIEEWKAAVKEMPRWVFYADGAY 205 Query: 205 FRINLTRDQNRTDIHQPGAYFLTYDLVAENEEMRAYVGPQNR---REWKTLSARLPEALA 261 I+L+ ++N Y LT + E P N R WKTL LP L Sbjct: 206 LEISLS-EKNMGGFVGKTTYLLTARIRNEYAFYGLGYFPGNAEKIRNWKTL---LPAELQ 261 Query: 262 LEQADRQQKEAEWQRKGARIDRAYQDPPVPAI 293 A R EA + +G ID AYQDPP+ A+ Sbjct: 262 KYHAKRIATEAALKGQGYTIDTAYQDPPIQAL 293