BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3187.p (435 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775838.1| iron-regulated membrane protein [Herbaspiril... 590 e-166 ref|YP_003051350.1| hypothetical protein Msip34_1578 [Methylovor... 395 e-107 ref|YP_004040036.1| hypothetical protein MPQ_1645 [Methylovorus ... 392 e-107 ref|YP_004513752.1| PepSY-associated TM helix domain-containing ... 298 2e-78 ref|YP_004108485.1| hypothetical protein Rpdx1_2156 [Rhodopseudo... 296 4e-78 >ref|YP_003775838.1| iron-regulated membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63930.1| iron-regulated membrane protein [Herbaspirillum seropedicae SmR1] Length = 435 Score = 590 bits (1522), Expect = e-166, Method: Composition-based stats. Identities = 295/408 (72%), Positives = 338/408 (82%) Query: 2 VSTLSAWLCRFAPRRHHLVLLHRWTGLAIAFFLLVACLTGSLLVFEDELELWLAPELHLA 61 + +L WL R AP RH LVLLHRWTGL +AFFL+V LTGSLLVF+DEL+ WLAP+L LA Sbjct: 5 LRSLRDWLVRHAPSRHVLVLLHRWTGLGMAFFLIVTSLTGSLLVFDDELDAWLAPQLQLA 64 Query: 62 QPAAGQSATAMLDPYQLRARVEQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPY 121 QPA GQSA AM+DPY LR +V Q + P+ ++QL+LH +PGRTV F +PA DPA+G+PY Sbjct: 65 QPAPGQSAQAMMDPYLLREKVAQAMGPQVHISQLVLHARPGRTVSFQADPATDPATGKPY 124 Query: 122 VLGYDEIWVNPYTGAIQGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATL 181 LGYDEI VNPYTG +QG RDR KISLKPA+LMPF+F LHHSLALPR GALL+GTV L Sbjct: 125 RLGYDEILVNPYTGVVQGVRDRDKISLKPADLMPFLFKLHHSLALPRAPGALLLGTVGLL 184 Query: 182 WTLDCLVGLILTWPRARPFLVKWKPAWLVKWQAGFYRVNLDLHRACGLWLWVMLLLIAWS 241 WTLDC VG+ILTWPRARPFLVKWKPAWL+KW+AGFYRVNLDLHRA GLW WVMLLL AWS Sbjct: 185 WTLDCFVGMILTWPRARPFLVKWKPAWLIKWRAGFYRVNLDLHRAFGLWCWVMLLLFAWS 244 Query: 242 SVMFNLRDEIYLPVMSQILPFDTSWRGRPPLPKPLAQPPLEWPQAHAMARAAMARFAQER 301 SVM NLRD+IYLPVMS+IL FDTSWR PPLP+ L+ PP WP+AHA+AR M FA++R Sbjct: 245 SVMLNLRDQIYLPVMSRILSFDTSWRPGPPLPQALSGPPQSWPEAHALARRTMDGFARQR 304 Query: 302 GLSIDFEEKLSMDRRRGLYAYMVHSNADIRSDAGNTGLLIDPATGDIRGHWLPQGDRSGN 361 GL IDFEEKL DRRRG+Y Y+VHSNAD+R+D GNTGL ID TG I GHWLP GDR GN Sbjct: 305 GLVIDFEEKLDFDRRRGVYIYLVHSNADLRADVGNTGLRIDARTGKILGHWLPVGDRDGN 364 Query: 362 TFSNWIGALHMGQVFGLSWRIFLAVLGVLVSVLTVTGIVIWWKKRAAR 409 TFSNW+GALHMG VFGL WRI L ++G VS+LTVTG+V+WWKKRAAR Sbjct: 365 TFSNWLGALHMGHVFGLPWRILLVLVGGAVSLLTVTGVVVWWKKRAAR 412 >ref|YP_003051350.1| hypothetical protein Msip34_1578 [Methylovorus glucosetrophus SIP3-4] gb|ACT50823.1| conserved hypothetical protein [Methylovorus glucosetrophus SIP3-4] Length = 403 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 204/404 (50%), Positives = 284/404 (70%), Gaps = 9/404 (2%) Query: 16 RHHLVLLHRWTGLAIAFFLLVACLTGSLLVFEDELELWLAPELHLAQPAAGQSATAMLDP 75 R +LV+ HRW GLA+A FL+VA TG+++ FE+E++ WL P HL PA Q+ A L+ Sbjct: 2 RAYLVIWHRWVGLAMAVFLVVAGFTGAIIAFEEEVDGWLNP--HLLHPA-WQAGRASLNA 58 Query: 76 YQLRARVEQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPYTG 135 Y LR +++ +++L+LH + G + F + G+ L DE++++P TG Sbjct: 59 YALREAAQRQAPAGILVDELLLHVEAGESAAFRLSLGQS-VDGKAAPLLADELFLHPQTG 117 Query: 136 AIQGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATLWTLDCLVGLILTWP 195 A+ G R R + L+ F++ LH+SLALP +G L+ G +A LWTLD +V LT P Sbjct: 118 AMLGMRLRGDSLFQRETLVGFLYKLHYSLALPGNSGRLIFGIIAVLWTLDSMVAFYLTLP 177 Query: 196 RAR-----PFLVKWKPAWLVKWQAGFYRVNLDLHRACGLWLWVMLLLIAWSSVMFNLRDE 250 R + FL +WKPAWL+KWQAG R+N DLHRA GLWL ++LL+ AWSSVMFNLR++ Sbjct: 178 RRQQAAKSSFLSRWKPAWLIKWQAGATRINFDLHRAFGLWLCLVLLMFAWSSVMFNLREQ 237 Query: 251 IYLPVMSQILPFDTSWRGRPPLPKPLAQPPLEWPQAHAMARAAMARFAQERGLSIDFEEK 310 +Y+PVM + FD SWR PPL +PL++ P+ W QAHAMAR AM RF+ ERGL +DFE++ Sbjct: 238 VYMPVMKTMFDFDLSWRSIPPLAQPLSREPMPWSQAHAMARQAMQRFSAERGLKVDFEDR 297 Query: 311 LSMDRRRGLYAYMVHSNADIRSDAGNTGLLIDPATGDIRGHWLPQGDRSGNTFSNWIGAL 370 L +DR+RGLYAY VHSNAD+RSD GNT +L+D ATG+I+G WLP GD++GNT SNW+GAL Sbjct: 298 LRLDRQRGLYAYFVHSNADLRSDRGNTAILMDAATGEIKGWWLPTGDKAGNTVSNWLGAL 357 Query: 371 HMGQVFGLSWRIFLAVLGVLVSVLTVTGIVIWWKKRAARAPRPV 414 HMGQVFGL +R+F++ G+ + +++VTG++IWW+KR + R V Sbjct: 358 HMGQVFGLPYRVFVSFCGLALVLVSVTGVLIWWRKRHGKQSRRV 401 >ref|YP_004040036.1| hypothetical protein MPQ_1645 [Methylovorus sp. MP688] gb|ADQ84800.1| conserved hypothetical protein [Methylovorus sp. MP688] Length = 403 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 203/404 (50%), Positives = 283/404 (70%), Gaps = 9/404 (2%) Query: 16 RHHLVLLHRWTGLAIAFFLLVACLTGSLLVFEDELELWLAPELHLAQPAAGQSATAMLDP 75 R +LV+ HRW GLA+A FL+VA TG+++ FE+E++ WL P H PA Q+ A L+ Sbjct: 2 RAYLVIWHRWVGLAMAVFLVVAGFTGAIIAFEEEVDGWLNP--HSLHPA-WQAGRAPLNA 58 Query: 76 YQLRARVEQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPYTG 135 Y LR +++ +++L+LH + G + F + P G+ L DE++++P TG Sbjct: 59 YALREAAQRQAPAGMLVDELLLHVEAGESAAFRLSPG-PSVDGKAAPLLADELFLHPQTG 117 Query: 136 AIQGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATLWTLDCLVGLILTWP 195 A G R R + L+ F++ LH+SLALP +G L+ G +A LWTLD +V LT P Sbjct: 118 ARLGMRLRGDSLFQRETLVGFLYKLHYSLALPGNSGRLIFGIIAVLWTLDSMVAFYLTLP 177 Query: 196 RAR-----PFLVKWKPAWLVKWQAGFYRVNLDLHRACGLWLWVMLLLIAWSSVMFNLRDE 250 R + +L +WKPAWL+KWQAG R+N DLHRA GLWL ++LL+ AWSSVMFNLR++ Sbjct: 178 RRQQAAKSSYLSRWKPAWLIKWQAGATRINFDLHRAFGLWLCLVLLMFAWSSVMFNLREQ 237 Query: 251 IYLPVMSQILPFDTSWRGRPPLPKPLAQPPLEWPQAHAMARAAMARFAQERGLSIDFEEK 310 +Y+PVM + FD SWR PPL +PL++ P+ WPQAHAMAR AM RF+ ERG +DFE++ Sbjct: 238 VYMPVMKTMFDFDLSWRSIPPLAQPLSREPMPWPQAHAMARQAMQRFSAERGHKVDFEDR 297 Query: 311 LSMDRRRGLYAYMVHSNADIRSDAGNTGLLIDPATGDIRGHWLPQGDRSGNTFSNWIGAL 370 L +DR+RGLYAY VHSNAD+RSD GNT +L+D ATG+I+G WLP GD++GNT SNW+GAL Sbjct: 298 LRLDRQRGLYAYFVHSNADLRSDRGNTAILMDAATGEIKGWWLPTGDKAGNTVSNWLGAL 357 Query: 371 HMGQVFGLSWRIFLAVLGVLVSVLTVTGIVIWWKKRAARAPRPV 414 HMGQVFGL +R+F++ G+ + +++VTG++IWW+KR + R V Sbjct: 358 HMGQVFGLPYRVFVSFCGLALVLVSVTGVLIWWRKRYGKQSRRV 401 >ref|YP_004513752.1| PepSY-associated TM helix domain-containing protein [Methylomonas methanica MC09] gb|AEG01253.1| PepSY-associated TM helix domain protein [Methylomonas methanica MC09] Length = 428 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 177/429 (41%), Positives = 248/429 (57%), Gaps = 33/429 (7%) Query: 16 RHHLVLLHRWTGLAIAFFLLVACLTGSLLVFEDELELWLAPELHLAQPAAGQSATAMLDP 75 R VL HR+ GLA+ FL++ LTGSLL F ELE L P+LH+ A G+ P Sbjct: 4 RPFWVLAHRYAGLAMTVFLIIVGLTGSLLAFYRELEQALNPQLHVE--ANGRP------P 55 Query: 76 YQLRARVE--QELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPY 133 + +E + LAP+A+++ + L+P V P +G+ Y L Y ++ ++PY Sbjct: 56 LDMPTLIESAERLAPQARVDSVWLNPG---AADISVSPRSKLTTGQAYELDYTQLILDPY 112 Query: 134 TGAIQGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATLWTLDCLVGLILT 193 G GRR+ IS LMPF++ LH++LAL G +L G A +WTLDC VG LT Sbjct: 113 NGEELGRRNVGDISQGLTNLMPFVYKLHYALALGEWGGWIL-GITALVWTLDCFVGFYLT 171 Query: 194 WPRA-------------------RPFLVKWKPAWLVKWQAGFYRVNLDLHRACGLWLWVM 234 P A R F +W+PAWL+KW+ YR+N DLHRA GLWLW++ Sbjct: 172 LPAAKRTQPLEQENASSGHTASKRSFWQRWRPAWLIKWRGSNYRINFDLHRAGGLWLWIV 231 Query: 235 LLLIAWSSVMFNLRDEIYLPVMSQILPFDTSWRGRPPLPKPLAQPPLEWPQAHAMARAAM 294 LL+ AWSSV NL D +Y VM + F W P L KP+ P + W +A+ + + AM Sbjct: 232 LLIFAWSSVFMNLGDTVYKTVMQTVSEFHQPWTEFPDLRKPMQHPAIGWREAYRIGQQAM 291 Query: 295 ARFAQERGLSIDFEEKLSMDRRRGLYAYMVHSNADIRSDAGNTGLLIDPATGDIRGHWLP 354 AR A E+G+ I+ + ++R +G Y + V S+ADI+ G T +ID +G+I+ LP Sbjct: 292 ARAAVEQGIQIEAPIGMWLNRAKGFYVFNVRSSADIQDKFGQTKAVIDADSGEIKLLLLP 351 Query: 355 QGDRSGNTFSNWIGALHMGQVFGLSWRIFLAVLGVLVSVLTVTGIVIWWKKRAARAPRPV 414 G +GNT + W+ ALHMG VFGL +RIF+ VLG+ + +L+VTG+VIW KKR A+A Sbjct: 352 SGQYNGNTITTWLMALHMGNVFGLPYRIFVCVLGLAIVMLSVTGLVIWLKKRRAKAYHAK 411 Query: 415 RAAVSARGT 423 RA +SA T Sbjct: 412 RAKLSAPPT 420 >ref|YP_004108485.1| hypothetical protein Rpdx1_2156 [Rhodopseudomonas palustris DX-1] gb|ADU43752.1| hypothetical protein Rpdx1_2156 [Rhodopseudomonas palustris DX-1] Length = 419 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 167/413 (40%), Positives = 237/413 (57%), Gaps = 12/413 (2%) Query: 20 VLLHRWTGLAIAFFLLVACLTGSLLVFEDELELWLAPELHLAQPAAGQSA--TAMLDPYQ 77 V +H+WTGL A FL+VA +TGSLL FE ELE + P ++ QP + AMLDP++ Sbjct: 9 VFIHKWTGLLAAAFLIVAGVTGSLLAFEKELEALVNPGQYVVQPRLDEQGRPAAMLDPFE 68 Query: 78 LRARVEQELAPRAQLNQLMLHPQPGRTVRFLVEPAMDPASGRPYVLGYDEIWVNPYTGAI 137 L AR L P Q+ P R+V F + G P D+ +++PY G + Sbjct: 69 LHARAVAAL-PGYQVTGFPFLRTPDRSVPF------NLTRGDPKQPDADQAFLDPYDGRL 121 Query: 138 QGRRDRQKISLKPAELMPFIFNLHHSLALPRVAGALLMGTVATLWTLDCLVGLILTWPRA 197 G R L+ FI+ LH++LALP G L G VA +WT++CLVG++ T+PR Sbjct: 122 LGVRKYGATPFDRTTLIGFIYKLHYALALPAPYGQWLFGLVALVWTVNCLVGIVSTFPRI 181 Query: 198 RPFLVKWKPAWLVKWQAGFYRVNLDLHRACGLWLWVMLLLIAWSSVMFNLRDEIYLPVMS 257 PF +W PAWL+K YR++ D+HRA GLWLW +L L AWSSVM NLR EIY PVMS Sbjct: 182 PPFWKRWLPAWLIKHTGSTYRLHYDVHRASGLWLWAVLFLFAWSSVMLNLRQEIYTPVMS 241 Query: 258 QILPFDTSWRGRPPLPKPLAQPPLEWPQAHAMARAAMARFAQERGLSIDFEEKLSMDRRR 317 L F + P ++P L WPQA+ +A AM A + G +++F L +RR Sbjct: 242 TFLEFSAT---PEPRKADTSKPLLGWPQAYDIASRAMDELAAQHGFTVNFRSHLFYNRRF 298 Query: 318 GLYAYMVHSNADIRSDAGNTGLLIDPATGDIRGHWLPQGDRSGNTFSNWIGALHMGQVFG 377 + Y +++ D++SD G TG+ ID +G + G +P G SG+T S W+ +LHM +VFG Sbjct: 299 DAFIYYANTSRDVQSDRGQTGVFIDARSGALLGSRMPTGAYSGDTVSRWLQSLHMAKVFG 358 Query: 378 LSWRIFLAVLGVLVSVLTVTGIVIWWKKRAARAPRPVRAAVSARGTGGSLPGH 430 L +RIF+A +G+ +++ TG+ +WWKKR AR R + + A+ H Sbjct: 359 LPFRIFVAFVGLALAISAYTGLYVWWKKRKARLARDDKLRIKAKALAAQPAPH 411