BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3186.p (175 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775745.1| ferric regulator sigma-24 subunit [Herbaspir... 204 3e-51 ref|YP_412526.1| extracytoplasmic-function sigma-70 factor [Nitr... 140 1e-31 ref|NP_746360.1| extracytoplasmic-function sigma-70 factor [Pseu... 126 1e-27 ref|YP_001348187.1| extracytoplasmic-function sigma-70 factor [P... 124 5e-27 gb|AAB09714.1| PvdS [Pseudomonas aeruginosa] 124 8e-27 >ref|YP_003775745.1| ferric regulator sigma-24 subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63837.1| ferric regulator sigma-24 subunit protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 114/175 (65%), Positives = 133/175 (76%), Gaps = 4/175 (2%) Query: 1 MHHATAPTG--LQQHFIGQRQRLREAAQRILGCPHRADDVVQDAYLKIREVQDQENCAIR 58 M+H T+ L++ FI R RLR+ A RILGCPHRADDVVQD ++KI EV D + I+ Sbjct: 1 MNHTTSTQAARLREQFIEHRARLRDVATRILGCPHRADDVVQDTFIKIAEVPDDFD--IK 58 Query: 59 QPQAYLMRIVRNLAIDRHRRCRFESDVFAEEEAGEDIHEEAQGPEAIAIGRQTLALVSQA 118 QP AYL RIVRNLAIDRHRR FE DVF EEE G D+H+E PEAIAI RQ L+++ +A Sbjct: 59 QPVAYLYRIVRNLAIDRHRRSAFECDVFTEEEDGLDVHQEGDSPEAIAISRQYLSMIGRA 118 Query: 119 LDGLPARTRRAFELYRLTGLSQREIAAELGISVTLVNFLIRDAQASCRQCLALTP 173 L+GLPARTRRAFELYRL+GL+QREIAAEL IS TLVNF+IRDA A CR L P Sbjct: 119 LEGLPARTRRAFELYRLSGLTQREIAAELNISTTLVNFMIRDALACCRNLLQNEP 173 >ref|YP_412526.1| extracytoplasmic-function sigma-70 factor [Nitrosospira multiformis ATCC 25196] gb|ABB75134.1| sigma-24 (FecI-like) [Nitrosospira multiformis ATCC 25196] Length = 169 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 83/163 (50%), Positives = 106/163 (65%), Gaps = 2/163 (1%) Query: 10 LQQHFIGQRQRLREAAQRILGCPHRADDVVQDAYLKIREVQDQENCAIRQPQAYLMRIVR 69 L + F+ R +LR AA +ILG P RA+DVVQDAYLK+ E + ++QP AYL ++VR Sbjct: 9 LSEVFMAHRSQLRWAALKILGNPERAEDVVQDAYLKVSEAAAVFH--VKQPVAYLFQMVR 66 Query: 70 NLAIDRHRRCRFESDVFAEEEAGEDIHEEAQGPEAIAIGRQTLALVSQALDGLPARTRRA 129 NLAID HRR FE ++F E+ G + PEA I R+ L LV++A+ LP RTRRA Sbjct: 67 NLAIDHHRRISFELNLFEGEDNGLHVPSHIGMPEATVISREHLKLVAKAISELPERTRRA 126 Query: 130 FELYRLTGLSQREIAAELGISVTLVNFLIRDAQASCRQCLALT 172 FEL+RL G + R IAAEL IS +LVN LI +A CR L T Sbjct: 127 FELHRLEGQTHRAIAAELAISTSLVNILIHEALDHCRAALQST 169 >ref|NP_746360.1| extracytoplasmic-function sigma-70 factor [Pseudomonas putida KT2440] gb|AAN69824.1|AE016622_1 ferric regulator PfrI [Pseudomonas putida KT2440] gb|ADR59282.1| PfrI [Pseudomonas putida BIRD-1] Length = 176 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 1/158 (0%) Query: 10 LQQHFIGQRQRLREAAQRILGCPHRADDVVQDAYLKIREVQDQENCAIRQPQAYLMRIVR 69 L Q F+ R L + A RI GC RA+DVVQDA+ ++ Q + + +YL +IVR Sbjct: 14 LLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRL-STAPQITSSFKAQLSYLFQIVR 72 Query: 70 NLAIDRHRRCRFESDVFAEEEAGEDIHEEAQGPEAIAIGRQTLALVSQALDGLPARTRRA 129 NLAID +R+ E EE G ++ + PEA I R L +++AL+ LP RTR A Sbjct: 73 NLAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYA 132 Query: 130 FELYRLTGLSQREIAAELGISVTLVNFLIRDAQASCRQ 167 FE+YRL G+ Q++IA ELG+S TLVNF+IRDA CR+ Sbjct: 133 FEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHCRK 170 >ref|YP_001348187.1| extracytoplasmic-function sigma-70 factor [Pseudomonas aeruginosa PA7] gb|ABR86076.1| RNA polymerase sigma factor, sigma-70 family [Pseudomonas aeruginosa PA7] Length = 187 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 74/163 (45%), Positives = 99/163 (60%), Gaps = 1/163 (0%) Query: 8 TGLQQHFIGQRQRLREAAQRILGCPHRADDVVQDAYLKIREVQDQENCAIRQPQAYLMRI 67 T L Q F+ R L + A RI GC RA+DVVQDA+ +++ Q + + +YL +I Sbjct: 12 TPLLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAP-QITSSFKAQLSYLFQI 70 Query: 68 VRNLAIDRHRRCRFESDVFAEEEAGEDIHEEAQGPEAIAIGRQTLALVSQALDGLPARTR 127 VRNLAID +R+ E EE G ++ + PEA I TL ++ AL LP RTR Sbjct: 71 VRNLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPEASHINYATLEHIADALTELPGRTR 130 Query: 128 RAFELYRLTGLSQREIAAELGISVTLVNFLIRDAQASCRQCLA 170 AFE+YRL G+ Q++IA ELG+S TLVNF+IRDA CR+ A Sbjct: 131 YAFEMYRLHGVPQKDIAKELGVSPTLVNFMIRDALVHCRKVTA 173 >gb|AAB09714.1| PvdS [Pseudomonas aeruginosa] Length = 187 Score = 124 bits (310), Expect = 8e-27, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 98/163 (60%), Gaps = 1/163 (0%) Query: 8 TGLQQHFIGQRQRLREAAQRILGCPHRADDVVQDAYLKIREVQDQENCAIRQPQAYLMRI 67 T L Q F+ R L + A RI GC RA+DVVQDA+ +++ Q + + +YL +I Sbjct: 12 TPLLQAFVDNRTILVKIAARITGCRSRAEDVVQDAFFRLQSAP-QITSSFKAQLSYLFQI 70 Query: 68 VRNLAIDRHRRCRFESDVFAEEEAGEDIHEEAQGPEAIAIGRQTLALVSQALDGLPARTR 127 VRNLAID +R+ E EE G ++ + PE I TL ++ AL LP RTR Sbjct: 71 VRNLAIDHYRKQALEQKYSGPEEEGLNVVIQGASPETSHINYATLEHIADALTELPKRTR 130 Query: 128 RAFELYRLTGLSQREIAAELGISVTLVNFLIRDAQASCRQCLA 170 AFE+YRL G+ Q++IA ELG+S TLVNF+IRDA CR+ A Sbjct: 131 YAFEMYRLHGVPQKDIAKELGVSTTLVNFMIRDALVHCRKVTA 173