BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3184.p (344 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775839.1| Fe2+-dicitrate sensor membrane protein [Herb... 361 8e-98 ref|NP_251157.1| anti-sigma factor FoxR [Pseudomonas aeruginosa ... 196 7e-48 ref|ZP_01365830.1| hypothetical protein PaerPA_01002957 [Pseudom... 196 7e-48 ref|ZP_07793550.1| putative transmembrane sensor [Pseudomonas ae... 195 1e-47 ref|YP_790770.1| transmembrane sensor [Pseudomonas aeruginosa UC... 194 3e-47 >ref|YP_003775839.1| Fe2+-dicitrate sensor membrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63931.1| Fe2+-dicitrate sensor, membrane component protein [Herbaspirillum seropedicae SmR1] Length = 342 Score = 361 bits (927), Expect = 8e-98, Method: Composition-based stats. Identities = 219/344 (63%), Positives = 254/344 (73%), Gaps = 2/344 (0%) Query: 1 MSANPMPSALPDPVLEQAIAWLVQLRAQPSGVAPDPALQARIDAWRAADGRHESVWSELM 60 M +NP+P L DPVL+QAIAWLV+LRA P A P LQA I AWRAAD RHE VWSELM Sbjct: 1 MPSNPIP--LQDPVLDQAIAWLVKLRAFPGDAAVAPELQAGIAAWRAADPRHEQVWSELM 58 Query: 61 ASEAQFQRLVALPVAPAQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQA 120 ASE QFQRLVALPV +QW PL L + R Q+RRRW+G LGLG +ALGA+AARQA Sbjct: 59 ASEEQFQRLVALPVPASQWHGPLKRLNQRRQHSQSRRRWMGNAMLGLGAIALGAVAARQA 118 Query: 121 GLWEGLDGQRYATGTGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTG 180 GL+E LDG YAT TG R+L LGDGT L L+T +SVQLRFD +RLL+L+QG+IFIDTG Sbjct: 119 GLFEALDGASYATRTGDQRQLRLGDGTALALNTSSSVQLRFDDTRRLLLLRQGEIFIDTG 178 Query: 181 KDALAAQHRPFLVQTAQARLQALGTRFAVRQQAGVTRLSLLEGRVAVDTGQGTRTVIVPG 240 DA HRPF VQTA ARLQALGTRF VRQ T+L++LEGRVAV V PG Sbjct: 179 ADAQWPHHRPFWVQTAHARLQALGTRFDVRQHGDGTQLTVLEGRVAVHVAGVDPLVAQPG 238 Query: 241 ETVEIDAGGNLRRQATAAAAMDPTAWLDGTLVTRDMRLGDVVAEMARYRHGWLYCEDGVA 300 E V+I G L R+A A+AMDPTAWL+ +LV R MRL DVVA++ARYR GWL C+ VA Sbjct: 239 EIVDIHPDGRLVRRAARASAMDPTAWLEQSLVVRQMRLADVVAQLARYRSGWLQCDPAVA 298 Query: 301 SLKVSGVFQLRDGEAALESLAQALPVRIEQRTRFWVRVTALNSR 344 +VSGVFQL+D + ALE+LAQALP+ IE+RTRFWVRV A R Sbjct: 299 DWQVSGVFQLQDTDVALEALAQALPLTIERRTRFWVRVAAAGKR 342 >ref|NP_251157.1| anti-sigma factor FoxR [Pseudomonas aeruginosa PAO1] ref|YP_002440420.1| Anti-sigma factor FoxR [Pseudomonas aeruginosa LESB58] gb|AAG05855.1|AE004674_5 Anti-sigma factor FoxR [Pseudomonas aeruginosa PAO1] emb|CAW27556.1| Anti-sigma factor FoxR [Pseudomonas aeruginosa LESB58] dbj|GAA18053.1| Anti-sigma factor FoxR [Pseudomonas aeruginosa NCMG1179] gb|AEO75055.1| Anti-sigma factor FoxR [Pseudomonas aeruginosa M18] Length = 328 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 142/334 (42%), Positives = 198/334 (59%), Gaps = 21/334 (6%) Query: 12 DPVLEQAIAWLVQLRAQPSGVAPDPALQARIDAWRAADGRHESVWSELMASEAQFQ-RLV 70 + V+ QAI WLV+LR+QP+ D LQ AWRA G HE W ++ A + Q R Sbjct: 10 EAVVRQAIHWLVRLRSQPA----DDRLQRACAAWRAEHGEHERAWQQVSALNEELQGRFK 65 Query: 71 ALPVAPAQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQR 130 ALP A S +R RR+ L ++L + G A+ A R + W+ L Sbjct: 66 ALPGGVAYGTLDSS------AQRLQRRQALKLLSLLVAGGAV-AWVGRDSLPWQRLSAD- 117 Query: 131 YATGTGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRP 190 Y+T TG+ R + L DGT+L L+TD++V +R+D QRL++L +G+IF+ +G D + HRP Sbjct: 118 YSTATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRP 177 Query: 191 FLVQTAQARLQALGTRFAVRQQAGVTRLSLLEGRVAVDTGQGTRTVIVP----GETVEID 246 V+TAQ +ALGTRF VR Q T LS+ EG V +D G R + P G++ I Sbjct: 178 LRVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRID-AFGARPLQAPVAEAGQSYRIA 236 Query: 247 AGGNLRRQATAAAAMDPTAWLDGTLVTRDMRLGDVVAEMARYRHGWLYCEDGVASLKVSG 306 A G R + MD AW DG +VTRDMRL D +AE+ARYR+G+L C VA L++SG Sbjct: 237 ADGVRRLE---RPQMDAVAWADGLIVTRDMRLADFLAEVARYRNGYLGCAAEVADLRLSG 293 Query: 307 VFQLRDGEAALESLAQALPVRIEQRTRFWVRVTA 340 V++L D + L+ LA+ LPVR+++ TR+WVRV A Sbjct: 294 VYRLDDTDKLLQVLARTLPVRLQRHTRWWVRVVA 327 >ref|ZP_01365830.1| hypothetical protein PaerPA_01002957 [Pseudomonas aeruginosa PACS2] Length = 332 Score = 196 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 142/334 (42%), Positives = 198/334 (59%), Gaps = 21/334 (6%) Query: 12 DPVLEQAIAWLVQLRAQPSGVAPDPALQARIDAWRAADGRHESVWSELMASEAQFQ-RLV 70 + V+ QAI WLV+LR+QP+ D LQ AWRA G HE W ++ A + Q R Sbjct: 14 EAVVRQAIHWLVRLRSQPA----DDRLQRACAAWRAEHGEHERAWQQVSALNEELQGRFK 69 Query: 71 ALPVAPAQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQR 130 ALP A S +R RR+ L ++L + G A+ A R + W+ L Sbjct: 70 ALPGGVAYGTLDSS------AQRLQRRQALKLLSLLVAGGAV-AWVGRDSLPWQRLSAD- 121 Query: 131 YATGTGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRP 190 Y+T TG+ R + L DGT+L L+TD++V +R+D QRL++L +G+IF+ +G D + HRP Sbjct: 122 YSTATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRP 181 Query: 191 FLVQTAQARLQALGTRFAVRQQAGVTRLSLLEGRVAVDTGQGTRTVIVP----GETVEID 246 V+TAQ +ALGTRF VR Q T LS+ EG V +D G R + P G++ I Sbjct: 182 LRVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRID-AFGARPLQAPVAEAGQSYRIA 240 Query: 247 AGGNLRRQATAAAAMDPTAWLDGTLVTRDMRLGDVVAEMARYRHGWLYCEDGVASLKVSG 306 A G R + MD AW DG +VTRDMRL D +AE+ARYR+G+L C VA L++SG Sbjct: 241 ADGVRRLE---RPQMDAVAWADGLIVTRDMRLADFLAEVARYRNGYLGCAAEVADLRLSG 297 Query: 307 VFQLRDGEAALESLAQALPVRIEQRTRFWVRVTA 340 V++L D + L+ LA+ LPVR+++ TR+WVRV A Sbjct: 298 VYRLDDTDKLLQVLARTLPVRLQRHTRWWVRVVA 331 >ref|ZP_07793550.1| putative transmembrane sensor [Pseudomonas aeruginosa 39016] gb|EFQ38646.1| putative transmembrane sensor [Pseudomonas aeruginosa 39016] gb|EGM13624.1| transmembrane sensor [Pseudomonas aeruginosa 138244] dbj|BAK90317.1| transmembrane sensor [Pseudomonas aeruginosa NCGM2.S1] Length = 328 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 142/334 (42%), Positives = 198/334 (59%), Gaps = 21/334 (6%) Query: 12 DPVLEQAIAWLVQLRAQPSGVAPDPALQARIDAWRAADGRHESVWSELMA-SEAQFQRLV 70 + V+ QAI WLV+LR+QP+ D LQ AWRA G HE W ++ A +E R Sbjct: 10 EAVVRQAIHWLVRLRSQPA----DDRLQRACAAWRAEHGEHERAWQQVSALNEELHGRFK 65 Query: 71 ALPVAPAQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQR 130 ALP A S +R RR+ L ++L + G A+ A R + W+ L Sbjct: 66 ALPGGVAYGTLDSS------AQRLQRRQALKLLSLLVAGGAV-AWVGRDSLPWQRLSAD- 117 Query: 131 YATGTGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRP 190 Y+T TG+ R + L DGT+L L+TD++V +R+D QRL++L +G+IF+ +G D + HRP Sbjct: 118 YSTATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRP 177 Query: 191 FLVQTAQARLQALGTRFAVRQQAGVTRLSLLEGRVAVDTGQGTRTVIVP----GETVEID 246 V+TAQ +ALGTRF VR Q T LS+ EG V +D G R + P G++ I Sbjct: 178 LRVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRID-AFGARPLQAPVAEAGQSYRIA 236 Query: 247 AGGNLRRQATAAAAMDPTAWLDGTLVTRDMRLGDVVAEMARYRHGWLYCEDGVASLKVSG 306 A G R + MD AW DG +VTRDMRL D +AE+ARYR+G+L C VA L++SG Sbjct: 237 ADGVRRLE---RPQMDAVAWADGLIVTRDMRLADFLAEVARYRNGYLGCAAEVADLRLSG 293 Query: 307 VFQLRDGEAALESLAQALPVRIEQRTRFWVRVTA 340 V++L D + L+ LA+ LPVR+++ TR+WVRV A Sbjct: 294 VYRLDDTDKLLQVLARTLPVRLQRHTRWWVRVVA 327 >ref|YP_790770.1| transmembrane sensor [Pseudomonas aeruginosa UCBPP-PA14] ref|ZP_06878590.1| transmembrane sensor [Pseudomonas aeruginosa PAb1] gb|ABJ11647.1| probable transmembrane sensor [Pseudomonas aeruginosa UCBPP-PA14] gb|EGM13733.1| transmembrane sensor [Pseudomonas aeruginosa 152504] Length = 328 Score = 194 bits (492), Expect = 3e-47, Method: Composition-based stats. Identities = 141/334 (42%), Positives = 197/334 (58%), Gaps = 21/334 (6%) Query: 12 DPVLEQAIAWLVQLRAQPSGVAPDPALQARIDAWRAADGRHESVWSELMA-SEAQFQRLV 70 + V+ QAI WLV+LR+QP+ D LQ AWRA G HE W ++ A +E R Sbjct: 10 EAVVRQAIHWLVRLRSQPA----DDRLQRACAAWRAEHGEHERAWQQVSALNEELHGRFK 65 Query: 71 ALPVAPAQWQQPLSELTRTRTRRQARRRWLGGVTLGLGGLALGALAARQAGLWEGLDGQR 130 ALP A S +R RR+ L ++L + G A+ A R + W+ L Sbjct: 66 ALPGGVAYGTLDSS------AQRLQRRQALKLLSLLVAGGAV-AWVGRDSLPWQRLSAD- 117 Query: 131 YATGTGQHRRLALGDGTQLTLDTDTSVQLRFDGRQRLLVLQQGDIFIDTGKDALAAQHRP 190 Y+T TG+ R + L DGT+L L+TD++V +R+D QRL++L +G+IF+ +G D + HRP Sbjct: 118 YSTATGERRSIELVDGTRLQLNTDSAVDVRYDAGQRLILLARGEIFLASGADTQSPTHRP 177 Query: 191 FLVQTAQARLQALGTRFAVRQQAGVTRLSLLEGRVAVDTGQGTRTVIVP----GETVEID 246 V+TAQ +ALGTRF VR Q T LS+ EG V +D G R + P G++ I Sbjct: 178 LRVRTAQGLFEALGTRFNVRLQDAATCLSVSEGSVRID-AFGARPLQAPVAEAGQSYRIA 236 Query: 247 AGGNLRRQATAAAAMDPTAWLDGTLVTRDMRLGDVVAEMARYRHGWLYCEDGVASLKVSG 306 A G R + MD AW DG +VTRDMRL D +AE+ RYR+G+L C VA L++SG Sbjct: 237 ADGVRRLE---RPQMDAVAWADGLIVTRDMRLADFLAEVGRYRNGYLGCAAEVADLRLSG 293 Query: 307 VFQLRDGEAALESLAQALPVRIEQRTRFWVRVTA 340 V++L D + L+ LA+ LPVR+++ TR+WVRV A Sbjct: 294 VYRLDDTDKLLQVLARTLPVRLQRHTRWWVRVVA 327