BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3178.p (539 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAQ36892.1| periplasmic dipeptide transport protein precurso... 822 0.0 ref|YP_002947492.1| extracellular solute-binding protein family ... 822 0.0 ref|YP_970539.1| extracellular solute-binding protein [Acidovora... 822 0.0 gb|AEG71953.1| periplasmic dipeptide transport protein precursor... 821 0.0 ref|YP_003748312.1| peptide ABC transporter periplasmic protein ... 820 0.0 >emb|CAQ36892.1| periplasmic dipeptide transport protein precursor [Ralstonia solanacearum MolK2] Length = 539 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 398/537 (74%), Positives = 471/537 (87%), Gaps = 1/537 (0%) Query: 4 NSKNKLD-LLSASDTAGLMDCLKRGASRRDILKMLLAGGMQATLAGGLATSAASAYAQTP 62 +S+N + L+ ++ +M+ LKRGASRRD+LKMLLAGGMQATLAGGLA +A +AYAQTP Sbjct: 3 DSRNPFESLVGPGESLRVMESLKRGASRRDVLKMLLAGGMQATLAGGLAGAAVTAYAQTP 62 Query: 63 RRGGKLRVGGDTASVSDTLDPAKQSNKTDYSRGTMLYNGLTSLDASLTPQPALAESFSSK 122 RRGG++RV TA+ +DTLDPAKQSN++DY R M+YNGL +LD SLTP+PALAES + Sbjct: 63 RRGGRIRVAAATAAATDTLDPAKQSNQSDYVRCNMVYNGLFALDGSLTPRPALAESSHTD 122 Query: 123 DARVWVFKLRRGVSFHDGKPLAPADVVFSLMRHKDPATASKAKTLADQIESVKETGPNEV 182 DA+ WVF LR+GV+FHDGK L+PADVV+S+ RHKDPATASKAK LADQIESVK +GPNEV Sbjct: 123 DAKTWVFTLRKGVTFHDGKALSPADVVYSIQRHKDPATASKAKVLADQIESVKASGPNEV 182 Query: 183 TVTLTAPNADLPVIVGTFHFHIVKAGTTDFSAGIGTGPYKLKEFTPGIRSVVVRNENYWK 242 T+ LTAPNADLPVI+GTFHFHIVK GTTDFS GIGTGPYK+KEF PG+R+VVVRNE YWK Sbjct: 183 TIVLTAPNADLPVILGTFHFHIVKEGTTDFSTGIGTGPYKIKEFKPGVRTVVVRNEGYWK 242 Query: 243 PGKPYLDEIEFVGIGDENARVNALLSGGLDLVANLNPRSIERVKGSAGFAVLETPSGAYT 302 PGKPYLDEIEFVGIGD++ARVNALLSGG+DLVA++NPR++ RVKG+ G+A+ T SG Y+ Sbjct: 243 PGKPYLDEIEFVGIGDDSARVNALLSGGMDLVASVNPRAVARVKGTPGYAIFTTQSGQYS 302 Query: 303 DLILRKDVGPGSNPDFVLAMKYLMDREVMRKNIARGHAVLGNDQPIDPTNPFYLAGLPQR 362 DLI+RKD+GPG+NPDFVLAMKYL DRE M+K IA HAVL NDQPIDPTN FY LPQR Sbjct: 303 DLIMRKDMGPGANPDFVLAMKYLFDREQMKKTIALDHAVLANDQPIDPTNRFYFKDLPQR 362 Query: 363 QMDLDKAKYHLQKSGVTGKIPLVCSAAAMYSVDIATVLQQTAQRVGLDLELKRMPPEGYW 422 DL+KAK+HLQKSGVTGK+P+V S AAMYSV+IA VLQQTAQR+GLDL++KRMP +GYW Sbjct: 363 PFDLEKAKFHLQKSGVTGKVPVVASPAAMYSVEIALVLQQTAQRIGLDLDIKRMPADGYW 422 Query: 423 SNQWLSNPVGFGNVNPRPSADVLLTQFFQSQAAWNESRFKSEKFDQLLTSARAEIDPGKR 482 SN WLS+PVGFGNVNPRPSAD +LTQFF+S AAWNESR+K+ KFDQLL SARAE D KR Sbjct: 423 SNHWLSSPVGFGNVNPRPSADTILTQFFKSDAAWNESRWKNPKFDQLLLSARAETDVAKR 482 Query: 483 KQMYGDMQTIIHEEAGIGIPMFLALLDGYSSKVKGLSPIPLGGMMGYSFAEHVWLDS 539 KQMY DMQT+IH+EAGIGIP+FLA +DG+SSK+KGLSPIPLGG+MGY+FAE+VWL++ Sbjct: 483 KQMYADMQTLIHDEAGIGIPLFLASIDGHSSKLKGLSPIPLGGLMGYAFAENVWLEA 539 >ref|YP_002947492.1| extracellular solute-binding protein family 5 [Variovorax paradoxus S110] gb|ACS22226.1| extracellular solute-binding protein family 5 [Variovorax paradoxus S110] Length = 540 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 401/538 (74%), Positives = 475/538 (88%) Query: 2 DHNSKNKLDLLSASDTAGLMDCLKRGASRRDILKMLLAGGMQATLAGGLATSAASAYAQT 61 D ++K +L+ ++ +MD LKRGASRRDIL ML+AGGMQATLAG LA+ A SA+AQT Sbjct: 3 DSSNKRFENLVGPGESLRVMDSLKRGASRRDILTMLMAGGMQATLAGSLASVAMSAHAQT 62 Query: 62 PRRGGKLRVGGDTASVSDTLDPAKQSNKTDYSRGTMLYNGLTSLDASLTPQPALAESFSS 121 PR+GG+LRV G TA+ +DTLDPAKQSN+TDYSR M+YNGLT+LD SLTPQPALAESF++ Sbjct: 63 PRKGGRLRVAGATAAATDTLDPAKQSNQTDYSRCNMVYNGLTTLDGSLTPQPALAESFTT 122 Query: 122 KDARVWVFKLRRGVSFHDGKPLAPADVVFSLMRHKDPATASKAKTLADQIESVKETGPNE 181 KDA+ WVF LR+GV+FHDGK LAPADVVFS+MRHKDPATASKAK LADQIES K TGPNE Sbjct: 123 KDAKTWVFTLRKGVAFHDGKALAPADVVFSVMRHKDPATASKAKILADQIESAKATGPNE 182 Query: 182 VTVTLTAPNADLPVIVGTFHFHIVKAGTTDFSAGIGTGPYKLKEFTPGIRSVVVRNENYW 241 VT L+APNADLPVI+GTFHFHIVK GTTDF+AGIGTGPYKLKEF PG+RS++VRNE YW Sbjct: 183 VTFVLSAPNADLPVILGTFHFHIVKEGTTDFNAGIGTGPYKLKEFKPGVRSLMVRNEAYW 242 Query: 242 KPGKPYLDEIEFVGIGDENARVNALLSGGLDLVANLNPRSIERVKGSAGFAVLETPSGAY 301 KPGKPYLDEIEFVGIGDE+ARVNALLSGG+DLV ++NPRS+ERVKG+ GF + T SG Y Sbjct: 243 KPGKPYLDEIEFVGIGDESARVNALLSGGMDLVGSVNPRSVERVKGTPGFGIFVTQSGQY 302 Query: 302 TDLILRKDVGPGSNPDFVLAMKYLMDREVMRKNIARGHAVLGNDQPIDPTNPFYLAGLPQ 361 +DLI+RKDVGPG+NPDFVLAMK+L DRE M+K IA +AV+ NDQP+DPTN FY AGLPQ Sbjct: 303 SDLIMRKDVGPGANPDFVLAMKHLFDREQMKKTIALDYAVVANDQPVDPTNRFYFAGLPQ 362 Query: 362 RQMDLDKAKYHLQKSGVTGKIPLVCSAAAMYSVDIATVLQQTAQRVGLDLELKRMPPEGY 421 R DLDKAK+H QKSG+TGK+P+V S AA+YSV+++ +LQQTAQR GL+L++KRMP +GY Sbjct: 363 RAFDLDKAKFHPQKSGITGKVPMVASPAALYSVEMSLLLQQTAQRAGLELDIKRMPADGY 422 Query: 422 WSNQWLSNPVGFGNVNPRPSADVLLTQFFQSQAAWNESRFKSEKFDQLLTSARAEIDPGK 481 WSN WL++ VGFGNVNPRPSADVLLTQFFQS AAWNESR+KSEKFDQLL ++RAE D K Sbjct: 423 WSNHWLNSHVGFGNVNPRPSADVLLTQFFQSGAAWNESRWKSEKFDQLLVASRAETDLAK 482 Query: 482 RKQMYGDMQTIIHEEAGIGIPMFLALLDGYSSKVKGLSPIPLGGMMGYSFAEHVWLDS 539 RKQMY DMQT+IH++AGIGIP+FL+ LDG+SSK+KGLSPIPLGG+MGY+FAE+VWL++ Sbjct: 483 RKQMYADMQTMIHQDAGIGIPLFLSSLDGHSSKLKGLSPIPLGGLMGYNFAENVWLET 540 >ref|YP_970539.1| extracellular solute-binding protein [Acidovorax citrulli AAC00-1] gb|ABM32765.1| extracellular solute-binding protein, family 5 [Acidovorax citrulli AAC00-1] Length = 519 Score = 822 bits (2122), Expect = 0.0, Method: Composition-based stats. Identities = 402/519 (77%), Positives = 460/519 (88%) Query: 21 MDCLKRGASRRDILKMLLAGGMQATLAGGLATSAASAYAQTPRRGGKLRVGGDTASVSDT 80 M L RGASRRD+L M LAGGMQA+LAGGLAT AA+A+AQTPRRGG++RV G TA+ +DT Sbjct: 1 MQSLARGASRRDVLAMFLAGGMQASLAGGLATMAANAHAQTPRRGGRIRVAGATAAATDT 60 Query: 81 LDPAKQSNKTDYSRGTMLYNGLTSLDASLTPQPALAESFSSKDARVWVFKLRRGVSFHDG 140 LDPAKQSN+TDYSRG MLYNGL SLD SLTPQPALAES S+ DA+ WVFKLR+GV FHDG Sbjct: 61 LDPAKQSNQTDYSRGNMLYNGLFSLDGSLTPQPALAESHSTADAKTWVFKLRKGVVFHDG 120 Query: 141 KPLAPADVVFSLMRHKDPATASKAKTLADQIESVKETGPNEVTVTLTAPNADLPVIVGTF 200 K LAP DVVFSLMRHKDPATASKAK LADQIESVK +GP EVTV L+ PNADLPVI+GTF Sbjct: 121 KALAPEDVVFSLMRHKDPATASKAKVLADQIESVKVSGPGEVTVVLSQPNADLPVILGTF 180 Query: 201 HFHIVKAGTTDFSAGIGTGPYKLKEFTPGIRSVVVRNENYWKPGKPYLDEIEFVGIGDEN 260 HFHIVK GTTDF+AGIGTGPYKL+EF PG+RS+VVRN+ YWKPGKPYLDEIEFVGIGDE Sbjct: 181 HFHIVKDGTTDFNAGIGTGPYKLREFKPGVRSLVVRNDAYWKPGKPYLDEIEFVGIGDET 240 Query: 261 ARVNALLSGGLDLVANLNPRSIERVKGSAGFAVLETPSGAYTDLILRKDVGPGSNPDFVL 320 ARVNALLSGG+DLVA++NPR++ RVKG+ G+A+ T SG Y+DLILRKD+GPG+NPDFVL Sbjct: 241 ARVNALLSGGMDLVASVNPRAVARVKGTPGYAIFTTQSGQYSDLILRKDMGPGANPDFVL 300 Query: 321 AMKYLMDREVMRKNIARGHAVLGNDQPIDPTNPFYLAGLPQRQMDLDKAKYHLQKSGVTG 380 AMK+L DRE M+K IA +AVLGNDQPIDPTN FY AGLPQR DLDKAK+HLQKSGVTG Sbjct: 301 AMKHLFDREQMKKTIALDYAVLGNDQPIDPTNRFYFAGLPQRTFDLDKAKFHLQKSGVTG 360 Query: 381 KIPLVCSAAAMYSVDIATVLQQTAQRVGLDLELKRMPPEGYWSNQWLSNPVGFGNVNPRP 440 K+P+V S AAMYS +IA +LQQ QR+GL+L++KRMP +GYWSN WL+NPVGFGNVNPRP Sbjct: 361 KVPVVTSPAAMYSTEIALLLQQAGQRIGLELDVKRMPADGYWSNHWLTNPVGFGNVNPRP 420 Query: 441 SADVLLTQFFQSQAAWNESRFKSEKFDQLLTSARAEIDPGKRKQMYGDMQTIIHEEAGIG 500 SAD LLTQFF+S AAWNESR+KS +FDQLL +ARAE D KRKQMY DMQT+IH+EAGIG Sbjct: 421 SADTLLTQFFKSDAAWNESRWKSAQFDQLLLAARAETDQAKRKQMYADMQTMIHQEAGIG 480 Query: 501 IPMFLALLDGYSSKVKGLSPIPLGGMMGYSFAEHVWLDS 539 IP+FLA +DG+SSK+KGLSPIPLGGMMGY+FAEHVWL++ Sbjct: 481 IPLFLASIDGHSSKLKGLSPIPLGGMMGYAFAEHVWLEA 519 >gb|AEG71953.1| periplasmic dipeptide transport protein precursor [Ralstonia solanacearum Po82] Length = 539 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 397/537 (73%), Positives = 470/537 (87%), Gaps = 1/537 (0%) Query: 4 NSKNKLD-LLSASDTAGLMDCLKRGASRRDILKMLLAGGMQATLAGGLATSAASAYAQTP 62 +S+N+ + L+ ++ +M+ LKRGASRRD+LKMLLAGGMQATLAG LA +A +AYAQTP Sbjct: 3 DSRNEFESLVGPGESLRVMESLKRGASRRDVLKMLLAGGMQATLAGSLAGAAVTAYAQTP 62 Query: 63 RRGGKLRVGGDTASVSDTLDPAKQSNKTDYSRGTMLYNGLTSLDASLTPQPALAESFSSK 122 RRGG++RV TA+ +DTLDPAKQSN+ DY R M+YNGL LD SLTP+PALAES + Sbjct: 63 RRGGRIRVAAATAAATDTLDPAKQSNQNDYVRCNMVYNGLFVLDGSLTPRPALAESSHTD 122 Query: 123 DARVWVFKLRRGVSFHDGKPLAPADVVFSLMRHKDPATASKAKTLADQIESVKETGPNEV 182 DA+ WVF LR+GV+FHDGK L+PADVV+S+ RHKDPATASKAK LADQIESVK +GPNEV Sbjct: 123 DAKTWVFTLRKGVTFHDGKALSPADVVYSIQRHKDPATASKAKVLADQIESVKASGPNEV 182 Query: 183 TVTLTAPNADLPVIVGTFHFHIVKAGTTDFSAGIGTGPYKLKEFTPGIRSVVVRNENYWK 242 T+ LTAPNADLPVI+GTFHFHIVK GTTDFSAGIGTGPYK+KEF PG+R+VVVRNE YWK Sbjct: 183 TIVLTAPNADLPVILGTFHFHIVKEGTTDFSAGIGTGPYKIKEFKPGVRTVVVRNEGYWK 242 Query: 243 PGKPYLDEIEFVGIGDENARVNALLSGGLDLVANLNPRSIERVKGSAGFAVLETPSGAYT 302 PGKPYLDEIEFVGIGD++ARVNALLSGG+DLVA++NPR++ RVKG+ G+A+ T SG Y+ Sbjct: 243 PGKPYLDEIEFVGIGDDSARVNALLSGGMDLVASVNPRAVARVKGTPGYAIFTTQSGQYS 302 Query: 303 DLILRKDVGPGSNPDFVLAMKYLMDREVMRKNIARGHAVLGNDQPIDPTNPFYLAGLPQR 362 DLI+RKD+GPG+NPDFVLAMKYL DRE M+K IA HAVL NDQPIDPTN FY LPQR Sbjct: 303 DLIMRKDMGPGANPDFVLAMKYLFDREQMKKTIALDHAVLANDQPIDPTNRFYFKDLPQR 362 Query: 363 QMDLDKAKYHLQKSGVTGKIPLVCSAAAMYSVDIATVLQQTAQRVGLDLELKRMPPEGYW 422 DL+KAK+HLQKSGVTGK+P+V S AAMYSV+IA VLQQTAQR+GLDL++KRMP +GYW Sbjct: 363 PFDLEKAKFHLQKSGVTGKVPVVASPAAMYSVEIALVLQQTAQRIGLDLDIKRMPADGYW 422 Query: 423 SNQWLSNPVGFGNVNPRPSADVLLTQFFQSQAAWNESRFKSEKFDQLLTSARAEIDPGKR 482 SN WLS+PVGFGNVNPRPSAD +LTQFF+S AAWNESR+K+ KFDQLL SARAE D KR Sbjct: 423 SNHWLSSPVGFGNVNPRPSADTILTQFFKSDAAWNESRWKNPKFDQLLLSARAETDLAKR 482 Query: 483 KQMYGDMQTIIHEEAGIGIPMFLALLDGYSSKVKGLSPIPLGGMMGYSFAEHVWLDS 539 KQMY DMQT+IH+EAGIGIP+FLA +DG+SSK+KGL+PIPLGG+MGY+FAE+VWL++ Sbjct: 483 KQMYADMQTLIHDEAGIGIPLFLASIDGHSSKLKGLAPIPLGGLMGYAFAENVWLEA 539 >ref|YP_003748312.1| peptide ABC transporter periplasmic protein [Ralstonia solanacearum CFBP2957] emb|CBJ53925.1| putative ABC transporter, periplasmic solute-binding protein; dipeptide-binding protein [Ralstonia solanacearum CFBP2957] Length = 539 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 398/537 (74%), Positives = 469/537 (87%), Gaps = 1/537 (0%) Query: 4 NSKNKLD-LLSASDTAGLMDCLKRGASRRDILKMLLAGGMQATLAGGLATSAASAYAQTP 62 +S+N + L+ ++ +M+ LKRGASRRD+LKMLLAGGMQATLAG LA +A +AYAQTP Sbjct: 3 DSRNPFESLVGPGESLRVMESLKRGASRRDVLKMLLAGGMQATLAGSLAGAAVTAYAQTP 62 Query: 63 RRGGKLRVGGDTASVSDTLDPAKQSNKTDYSRGTMLYNGLTSLDASLTPQPALAESFSSK 122 RRGG++RV TA+ +DTLDPAKQSN+ DY R M+YNGL LD SLTP+PALAES + Sbjct: 63 RRGGRIRVAAATAAATDTLDPAKQSNQNDYVRCNMVYNGLFVLDGSLTPRPALAESSHTD 122 Query: 123 DARVWVFKLRRGVSFHDGKPLAPADVVFSLMRHKDPATASKAKTLADQIESVKETGPNEV 182 DA+ WVF LR+GV+FHDGK L+PADVV+S+ RHKDPATASKAK LADQIESVK +GPNEV Sbjct: 123 DAKTWVFTLRKGVTFHDGKALSPADVVYSIQRHKDPATASKAKVLADQIESVKASGPNEV 182 Query: 183 TVTLTAPNADLPVIVGTFHFHIVKAGTTDFSAGIGTGPYKLKEFTPGIRSVVVRNENYWK 242 T+ LTAPNADLPVI+GTFHFHIVK GTTDFSAGIGTGPYK+KEF PG+R+VVVRNE YWK Sbjct: 183 TIVLTAPNADLPVILGTFHFHIVKEGTTDFSAGIGTGPYKIKEFKPGVRTVVVRNEGYWK 242 Query: 243 PGKPYLDEIEFVGIGDENARVNALLSGGLDLVANLNPRSIERVKGSAGFAVLETPSGAYT 302 PGKPYLDEIEFVGIGD++ARVNALLSGG+DLVA++NPR++ RVKG+ G+A+ T SG Y+ Sbjct: 243 PGKPYLDEIEFVGIGDDSARVNALLSGGMDLVASVNPRAVARVKGTPGYAIFTTQSGQYS 302 Query: 303 DLILRKDVGPGSNPDFVLAMKYLMDREVMRKNIARGHAVLGNDQPIDPTNPFYLAGLPQR 362 DLI+RKD+GPG+NPDFVLAMKYL DRE M+K IA HAVL NDQPIDPTN FY LPQR Sbjct: 303 DLIMRKDMGPGANPDFVLAMKYLFDREQMKKTIALDHAVLANDQPIDPTNRFYFKDLPQR 362 Query: 363 QMDLDKAKYHLQKSGVTGKIPLVCSAAAMYSVDIATVLQQTAQRVGLDLELKRMPPEGYW 422 DL+KAK+HLQKSGVTGK+P+V S AAMYSV+IA VLQQTAQR+GLDL++KRMP +GYW Sbjct: 363 PFDLEKAKFHLQKSGVTGKVPVVASPAAMYSVEIALVLQQTAQRIGLDLDIKRMPADGYW 422 Query: 423 SNQWLSNPVGFGNVNPRPSADVLLTQFFQSQAAWNESRFKSEKFDQLLTSARAEIDPGKR 482 SN WLS+PVGFGNVNPRPSAD +LTQFF+S AAWNESR+K+ KFDQLL SARAE D KR Sbjct: 423 SNHWLSSPVGFGNVNPRPSADTILTQFFKSDAAWNESRWKNPKFDQLLLSARAETDLAKR 482 Query: 483 KQMYGDMQTIIHEEAGIGIPMFLALLDGYSSKVKGLSPIPLGGMMGYSFAEHVWLDS 539 KQMY DMQT+IH+EAGIGIP+FLA +DG+SSK+KGLSPIPLGG+MGY+FAE+VWL++ Sbjct: 483 KQMYADMQTLIHDEAGIGIPLFLASIDGHSSKLKGLSPIPLGGLMGYAFAENVWLEA 539