BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3177.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775842.1| transcription response regulator protein [He... 277 7e-73 ref|ZP_08019170.1| two component response regulator [Lautropia m... 269 3e-70 ref|YP_585146.1| winged helix family two component transcription... 267 1e-69 ref|YP_001109885.1| two component transcriptional regulator [Bur... 266 1e-69 ref|ZP_03268711.1| two component transcriptional regulator, wing... 266 2e-69 >ref|YP_003775842.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63934.1| transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 277 bits (709), Expect = 7e-73, Method: Composition-based stats. Identities = 165/220 (75%), Positives = 194/220 (88%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MRILLVEDDAMIGEEVR AL++ YAADWVR G+AA AL QQ YDA+LLDLGLPGADGL Sbjct: 1 MRILLVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGL 60 Query: 61 SVLRQMRRHATTPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKSG 120 +VLRQ+R H+ PVL++TARDG+QDRI GLD+GADDY+LKPFA+GELLARLRAV+RR+SG Sbjct: 61 AVLRQLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSG 120 Query: 121 AATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIYG 180 AA+ L NG+++LDLA KTA W+ P V LSAREFALL ALM RPGAILSR+ELEE++YG Sbjct: 121 AASDQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYG 180 Query: 181 WGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 WGEEVESNAVEFLIH+LR+KLD+ AI+NVRGMGW+V R + Sbjct: 181 WGEEVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 220 >ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599] gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599] Length = 221 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 148/221 (66%), Positives = 174/221 (78%), Gaps = 1/221 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MR+LLVEDD MIG V AL +AS+AADWV+DGN+A AL Q YD VLLDLGLPG DGL Sbjct: 1 MRVLLVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGL 60 Query: 61 SVLRQMRRHATT-PVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 VLR +R TT PVLI+TARD + DRI GLD+GADDYILKPF + ELLAR+RAV+RR+ Sbjct: 61 EVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQG 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A +L + L+LD A A QGQP V LS REFALL ALM RPGAILSR++LE+RIY Sbjct: 121 GQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIY 180 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 GWG+EVESNA+E+LIH+LRKKL AIRN+RG GWMV++ A Sbjct: 181 GWGQEVESNAIEYLIHSLRKKLGSEAIRNIRGAGWMVSKQA 221 >ref|YP_585146.1| winged helix family two component transcriptional regulator (Tn6048) [Cupriavidus metallidurans CH34] ref|YP_586176.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|YP_587109.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 145/221 (65%), Positives = 172/221 (77%), Gaps = 1/221 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MR+LLVEDD MIG+ ++ AL++ASYAADWV+DG A L Q YD VLLDLGLPG DGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 SVLRQMR-RHATTPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 VL +R + P+LI+TARDG+ DR+ GLD GADDY+ KPF M ELLAR+RAV+RRK Sbjct: 61 EVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A VL NG ++LD A K A P V LS REF+LLQAL+ RPGAILSRSELE+RIY Sbjct: 121 GTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 GWGEEVESNAVE+LIHALR+KL I+NVRG+GWMV++GA Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 145/221 (65%), Positives = 172/221 (77%), Gaps = 1/221 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MR+LLVEDD MIG+ ++ AL++ASYAADWV+DG A L Q YD VLLDLGLPG DGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 SVLRQMR-RHATTPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 VL +R + P+LI+TARDG+ DR+ GLD GADDY+ KPF M ELLAR+RAV+RRK Sbjct: 61 EVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G A VL NG ++LD A K A P V LS REF+LLQAL+ RPGAILSRSELE+RIY Sbjct: 121 GTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 GWGEEVESNAVE+LIHALR+KL I+NVRG+GWMV++GA Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 266 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 145/221 (65%), Positives = 173/221 (78%), Gaps = 1/221 (0%) Query: 1 MRILLVEDDAMIGEEVRAALREASYAADWVRDGNAAHAALDQQDYDAVLLDLGLPGADGL 60 MR+LLVEDD MIG+ ++ AL++ASYAADWV+DG A L Q YD VLLDL LPG DGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGL 60 Query: 61 SVLRQMR-RHATTPVLILTARDGVQDRIDGLDSGADDYILKPFAMGELLARLRAVMRRKS 119 VL ++R + P+LI+TARDG+ DR+ GLD GADDY+LKPF M ELLAR+RAV+RRK Sbjct: 61 EVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKG 120 Query: 120 GAATVVLDNGELSLDLADKTARWQGQPPVALSAREFALLQALMHRPGAILSRSELEERIY 179 G+A L NG LSLD A K A G P+ LS REF+LLQAL+ RPGAILSRSELE+RIY Sbjct: 121 GSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 180 GWGEEVESNAVEFLIHALRKKLDRTAIRNVRGMGWMVARGA 220 GWGEEVESNAVE+LIHALR+KL I+NVRG+GWMV++ A Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSKDA 221