BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3176.p (327 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775843.1| signal transduction histidine kinase [Herbas... 293 3e-77 ref|YP_001901176.1| integral membrane sensor signal transduction... 237 2e-60 ref|ZP_07675068.1| sensor histidine kinase [Ralstonia sp. 5_7_47... 236 3e-60 ref|YP_002983237.1| histidine kinase [Ralstonia pickettii 12D] >... 236 5e-60 ref|YP_285503.1| sensor histidine kinase [Dechloromonas aromatic... 231 1e-58 >ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ63935.1| signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 446 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 176/282 (62%), Positives = 215/282 (76%) Query: 4 LQRSLQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPA 63 ++RSLQA+LSLALT AILVVAL AG FGF++AYRDSIR QDDLL+QVG L+ G L Sbjct: 8 MKRSLQAQLSLALTAAILVVALGAGGFGFVTAYRDSIRSQDDLLMQVGALLKHSGAALSL 67 Query: 64 DGAEGSYPGADHESRISVQWLPEPGQSLPAGTALPLPAGLQDGFQTAVMFHENFRVYVQP 123 +GA + G +H+SR++VQWLP+PG LPLPA L +GF T ++ HE FRVYVQ Sbjct: 68 EGAGMAAAGDEHDSRVTVQWLPDPGDPPADAAPLPLPADLAEGFHTLLLHHEYFRVYVQA 127 Query: 124 LASGRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREI 183 L +G+R+ALAQETD+R IA RSAWRA+ P ++L P+LLLA++ I++ LFAPL LR+EI Sbjct: 128 LPNGKRLALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQALRQEI 187 Query: 184 DQRRDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALS 243 D R +D L P+A + LP E+ V AIN LLARV+ M AQRRFVADAAHELRTPL ALS Sbjct: 188 DSRGEDDLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPLTALS 247 Query: 244 LQAEGLQRSELSDTARARLQRLEQGLERARALVTQLLALARG 285 LQAE L R+ +S+TAR RL RLE GL+RAR LVTQLLALAR Sbjct: 248 LQAERLGRAPMSETARERLTRLETGLQRARQLVTQLLALARA 289 >ref|YP_001901176.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] gb|ACD28744.1| integral membrane sensor signal transduction histidine kinase [Ralstonia pickettii 12J] Length = 439 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 143/279 (51%), Positives = 194/279 (69%), Gaps = 8/279 (2%) Query: 8 LQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPADGAE 67 +Q RLS+ L++ I+ VA+ AG F F SA+R++ QDD+L QVG + G LPA G Sbjct: 11 VQQRLSVWLSVIIVAVAVLAGGFAFASAFREAHELQDDVLRQVGAMFDP--GHLPAPGEA 68 Query: 68 GSYPG-ADHESRISVQWLPEPGQSLPAGTALPLPAGLQDGFQTAVMFHENFRVYVQPLAS 126 P +D E+R+ VQ LP P ++PA + P L DG QTA + ++RV+++ LA+ Sbjct: 69 ADAPKVSDTEARVIVQVLP-PAGAVPAAS----PPVLTDGMQTARLGKRDYRVWIRTLAN 123 Query: 127 GRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREIDQR 186 G+RIA+AQET VRD A SA R ++P L+LVP+LLLA+ H++R +FAP+ +L E+DQR Sbjct: 124 GQRIAVAQETAVRDETARDSALRTLMPFLILVPILLLAVAHVLRKMFAPIKRLAHEVDQR 183 Query: 187 RDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALSLQA 246 + QL +A + +P E+ P V AINRLLARVQ +M AQ RFVADAAHELRTPL+ALSLQA Sbjct: 184 DERQLHAIAPEAVPDEVRPFVVAINRLLARVQQSMDAQHRFVADAAHELRTPLSALSLQA 243 Query: 247 EGLQRSELSDTARARLQRLEQGLERARALVTQLLALARG 285 E L ++ +S A+ARL L QG+ER+R L+ QLL LAR Sbjct: 244 ERLGQAAMSPDAQARLGTLRQGIERSRGLLEQLLTLARA 282 >ref|ZP_07675068.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA] gb|EFP66666.1| sensor histidine kinase [Ralstonia sp. 5_7_47FAA] Length = 446 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 145/279 (51%), Positives = 195/279 (69%), Gaps = 8/279 (2%) Query: 8 LQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPADGAE 67 +Q RLS+ L++ I+ VA+ AG F F SA+R++ QDD+L QVG + G LPA G Sbjct: 18 VQRRLSVWLSVIIVAVAMLAGGFAFASAFREAHELQDDVLRQVGAMFDP--GHLPAPGDP 75 Query: 68 GSYPG-ADHESRISVQWLPEPGQSLPAGTALPLPAGLQDGFQTAVMFHENFRVYVQPLAS 126 P +D E+R+ VQ LP P ++PA LP+ L DG QTA + ++RV+V+ LA+ Sbjct: 76 ADAPKVSDTEARVIVQVLP-PAGAVPAAN-LPV---LTDGMQTARLGKRDYRVWVRTLAN 130 Query: 127 GRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREIDQR 186 G+RIA+AQET VRD A SA R ++P L+LVP+LLLA+ H++R +FAP+ +L E+DQR Sbjct: 131 GQRIAVAQETAVRDETARDSALRTLMPFLILVPILLLAVAHVLRKMFAPIKRLAHEVDQR 190 Query: 187 RDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALSLQA 246 + QL +A + +P E+ P V AINRLLARVQ +M AQ RFVADAAHELRTPL+ALSLQA Sbjct: 191 DERQLHAIAPEAVPDEVRPFVVAINRLLARVQQSMDAQHRFVADAAHELRTPLSALSLQA 250 Query: 247 EGLQRSELSDTARARLQRLEQGLERARALVTQLLALARG 285 E L ++ +S A+ARL L QG+ER+R L+ QLL LAR Sbjct: 251 ERLGQAAMSTDAQARLGTLRQGIERSRGLLEQLLTLARA 289 >ref|YP_002983237.1| histidine kinase [Ralstonia pickettii 12D] gb|ACS64565.1| histidine kinase [Ralstonia pickettii 12D] Length = 439 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 145/279 (51%), Positives = 195/279 (69%), Gaps = 8/279 (2%) Query: 8 LQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPADGAE 67 +Q RLS+ L++ I+ VA+ AG F F SA+R++ QDD+L QVG + G LPA G Sbjct: 11 VQRRLSVWLSVIIVAVAMLAGGFAFASAFREAHELQDDVLRQVGAMFDP--GHLPAPGDP 68 Query: 68 GSYPG-ADHESRISVQWLPEPGQSLPAGTALPLPAGLQDGFQTAVMFHENFRVYVQPLAS 126 P +D E+R+ VQ LP P ++PA LP+ L DG QTA + ++RV+V+ LA+ Sbjct: 69 ADAPKVSDTEARVIVQVLP-PAGAVPAAN-LPV---LTDGMQTARLGKRDYRVWVRTLAN 123 Query: 127 GRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREIDQR 186 G+RIA+AQET VRD A SA R ++P L+LVP+LLLA+ H++R +FAP+ +L E+DQR Sbjct: 124 GQRIAVAQETAVRDETARDSALRTLMPFLILVPILLLAVAHVLRKMFAPIKRLAHEVDQR 183 Query: 187 RDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALSLQA 246 + QL +A + +P E+ P V AINRLLARVQ +M AQ RFVADAAHELRTPL+ALSLQA Sbjct: 184 DERQLHAIAPEAVPDEVRPFVVAINRLLARVQQSMDAQHRFVADAAHELRTPLSALSLQA 243 Query: 247 EGLQRSELSDTARARLQRLEQGLERARALVTQLLALARG 285 E L ++ +S A+ARL L QG+ER+R L+ QLL LAR Sbjct: 244 ERLGQAAMSPDAQARLGTLRQGIERSRGLLEQLLTLARA 282 >ref|YP_285503.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ47033.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 471 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 143/285 (50%), Positives = 189/285 (66%), Gaps = 3/285 (1%) Query: 4 LQRSLQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPA 63 L S+Q +LS +L+LAILV+A+ AG F F+SA+ ++ QDD+L QV L R L Sbjct: 8 LNESVQFKLSFSLSLAILVIAVVAGIFSFVSAFDEAHELQDDMLRQVAALFDRQHLPLAH 67 Query: 64 DGAEGSYPGADHESRISVQWLPEPGQSL---PAGTALPLPAGLQDGFQTAVMFHENFRVY 120 G +G +D ESR+ VQ+L + G++ AG LPLP L DG T + E FRV Sbjct: 68 LGDDGRAKDSDEESRVVVQYLADDGKAAGKGDAGVPLPLPITLPDGLHTLDVSGEPFRVL 127 Query: 121 VQPLASGRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLR 180 V+ ++G RIA+AQET VRD IA SA R ++P L+LVP+LLL + ++R +F P+A L Sbjct: 128 VKTTSNGERIAVAQETGVRDEIARDSALRTLMPFLILVPILLLIVADLVRKMFRPIASLS 187 Query: 181 REIDQRRDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLA 240 EIDQR + +L P+ LP E+ P V AINRLLARV +M QRRFVADAAHELR+PL Sbjct: 188 AEIDQRAEQELHPIEDSHLPAEVRPFVVAINRLLARVDQSMETQRRFVADAAHELRSPLT 247 Query: 241 ALSLQAEGLQRSELSDTARARLQRLEQGLERARALVTQLLALARG 285 ALSLQAE L ++++SD AR RL L +G+ER R L+ QLL LA+ Sbjct: 248 ALSLQAERLDQADMSDLARERLMTLRRGIERGRNLLDQLLTLAKA 292