BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3174.p (191 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775844.1| cytochrome b561 protein [Herbaspirillum sero... 280 5e-74 ref|YP_003522801.1| cytochrome B561 [Sideroxydans lithotrophicus... 132 2e-29 ref|YP_004675274.1| Cytochrome B561 [Hyphomicrobium sp. MC1] >gi... 130 7e-29 ref|YP_001156151.1| cytochrome B561 [Polynucleobacter necessariu... 127 8e-28 ref|YP_004380919.1| cytochrome b561 [Pseudomonas mendocina NK-01... 124 9e-27 >ref|YP_003775844.1| cytochrome b561 protein [Herbaspirillum seropedicae SmR1] gb|ADJ63936.1| cytochrome b561 protein [Herbaspirillum seropedicae SmR1] Length = 189 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 153/176 (86%), Positives = 165/176 (93%) Query: 16 TRYHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLIFVVVRL 75 +RYHPL LHW++F+LFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLI VV+RL Sbjct: 13 SRYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRL 72 Query: 76 IARKLMGVPPELPLPRLQQLGASAVHLLLYAVMIGLPITGILFTQAGGRDVVFFGMTLPV 135 +ARK GVPPEL LPR+Q+ GA+AVHLLLYAVMIGLP+TGILFTQAGGRDVVFFGMTLPV Sbjct: 73 LARKAFGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPV 132 Query: 136 ILAKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQRMSLRSPRK 191 ILAKDMA+RGPIKE HEFMGNAVYFLVGLHVLGALWHQ FDRMPILQRMSLR PR+ Sbjct: 133 ILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRGPRQ 188 >ref|YP_003522801.1| cytochrome B561 [Sideroxydans lithotrophicus ES-1] gb|ADE10414.1| cytochrome B561 [Sideroxydans lithotrophicus ES-1] Length = 182 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 77/181 (42%), Positives = 105/181 (58%), Gaps = 5/181 (2%) Query: 5 MNKTNNALGQGTRYHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAG 64 MN N A +RY + +HWLM +LF+ ATI R+ PKG R+ L+T H G Sbjct: 1 MNWKNTA----SRYGSVSIGIHWLMLLLFIAVYATINLRELYPKGSDPREALKTWHFMLG 56 Query: 65 QLVLIFVVVRLIARKLMGVPPELP-LPRLQQLGASAVHLLLYAVMIGLPITGILFTQAGG 123 L V +RL AR P P LPR Q++ + +HL LYA+MIG+PITG L A G Sbjct: 57 MLAFGLVWLRLAARFSGPTPLIQPALPRSQEISSKLLHLALYALMIGMPITGWLLLSASG 116 Query: 124 RDVVFFGMTLPVILAKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQR 183 + + FFG+ LP ++ ++ + IKEVHEF+G A Y+L+GLH + AL+H R L R Sbjct: 117 KPIPFFGLQLPALIGQNKELASQIKEVHEFVGTAGYYLIGLHTIAALYHHYIKRDNTLTR 176 Query: 184 M 184 M Sbjct: 177 M 177 >ref|YP_004675274.1| Cytochrome B561 [Hyphomicrobium sp. MC1] emb|CCB64700.1| Cytochrome B561 [Hyphomicrobium sp. MC1] Length = 186 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 71/181 (39%), Positives = 104/181 (57%), Gaps = 1/181 (0%) Query: 5 MNKTNNALGQGTRYHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAG 64 M N+ + Y P ALHW+M +L IE + PKG R LL ++HM G Sbjct: 1 MTVATNSSVNSSSYPPSAIALHWIMAVLIAAVFTAIELKGYYPKGSETRALLASIHMMLG 60 Query: 65 QLVLIFVVVRLIARKLMGVPPELPLPRLQQLG-ASAVHLLLYAVMIGLPITGILFTQAGG 123 VL+ V++R+ R G PP +P P + Q A H +LYA MIG+P+ G + A G Sbjct: 61 ITVLLLVIIRIGIRSHNGTPPIIPRPAVWQTAIAHLTHFILYAAMIGMPLLGWIMVSAAG 120 Query: 124 RDVVFFGMTLPVILAKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQR 183 V F+G++LP I+ +D A+ ++E+HEF+GNA+Y+++GLH +GAL+H R L R Sbjct: 121 HSVPFYGLSLPPIVGEDKALSHNLEEIHEFIGNALYYVIGLHAVGALFHHYVLRDNTLIR 180 Query: 184 M 184 M Sbjct: 181 M 181 >ref|YP_001156151.1| cytochrome B561 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gb|ABP34587.1| cytochrome B561 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 180 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 65/167 (38%), Positives = 96/167 (57%) Query: 18 YHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLIFVVVRLIA 77 YHP HWL+F L ++AL IE + P+G R+L +TVH GQL+ I + +RL Sbjct: 6 YHPASIFFHWLIFTLVILALGVIELKGQFPRGSEPRELCKTVHSFLGQLIFIAMAIRLCV 65 Query: 78 RKLMGVPPELPLPRLQQLGASAVHLLLYAVMIGLPITGILFTQAGGRDVVFFGMTLPVIL 137 R G P L L + + A +H Y +++ LPI G +F QAGG++V F P ++ Sbjct: 66 RLKYGAPKPLNLNKPLLVLAKGLHWTFYLLLLTLPIMGFIFLQAGGKEVHFLSWAWPELI 125 Query: 138 AKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 184 + + ++ KE HE++GNA+YFL+GLH L LWH + L+RM Sbjct: 126 SPNPDIKKIFKESHEWLGNALYFLIGLHALAGLWHHYLLKDDTLRRM 172 >ref|YP_004380919.1| cytochrome b561 [Pseudomonas mendocina NK-01] gb|AEB59167.1| cytochrome b561 [Pseudomonas mendocina NK-01] Length = 182 Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 72/170 (42%), Positives = 95/170 (55%), Gaps = 1/170 (0%) Query: 16 TRYHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLIFVVVRL 75 +RY L LHWLM +L A IE + + PKG R+LL+ H G V V +RL Sbjct: 8 SRYGSLSIGLHWLMLLLIAAVYACIELKGNFPKGSDTRELLKQWHFMLGLTVFALVWLRL 67 Query: 76 IARKLMGVPPELPLPR-LQQLGASAVHLLLYAVMIGLPITGILFTQAGGRDVVFFGMTLP 134 +AR L P P P Q L A +HL LYA+MIG P+ G L A G+ + FFG+ LP Sbjct: 68 LARALNPTPTIEPAPPGWQNLLAKLMHLALYALMIGAPLAGWLILSAAGKPIPFFGLELP 127 Query: 135 VILAKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 184 ++A + + G IKE+HE G A Y+L+GLH L L+H R L+RM Sbjct: 128 ALIAPNKELAGQIKELHELAGTAGYWLIGLHALAGLYHHYVVRDNTLKRM 177