BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3173.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_581798.1| cytochrome c [Cupriavidus metallidurans CH34] >... 410 e-112 ref|YP_145585.1| putative cytochrome C [Ralstonia metallidurans ... 409 e-112 ref|ZP_04522159.1| cytochrome C [Burkholderia pseudomallei MSHR3... 405 e-111 ref|ZP_04892708.1| cytochrome c family protein [Burkholderia pse... 404 e-110 ref|ZP_02486514.1| cytochrome c family protein [Burkholderia pse... 404 e-110 >ref|YP_581798.1| cytochrome c [Cupriavidus metallidurans CH34] gb|ABF12848.1| Cytochrome c, mono- and diheme variants [Cupriavidus metallidurans CH34] Length = 773 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 209/348 (60%), Positives = 253/348 (72%), Gaps = 17/348 (4%) Query: 33 AMPTSAASLS---DDLPSDFSDALDASTREQVLRGRYVARLGDCVACHTQDKRKPMAGGL 89 ++P++ A L DDLP++++ +D +TR QV RGRYVARLGDCVACHT DK KPMAGGL Sbjct: 77 SLPSAHAQLPQVIDDLPANYASGMDQATRAQVERGRYVARLGDCVACHTSDKTKPMAGGL 136 Query: 90 ALETPFGKLYSTNITPDRQTGIGQYSFAQFDRVMREGVTADGRHLYPAMPYPSYAKMSEE 149 L+TPFG LYSTNITPD TGIG+Y+F QFDR MR+GV ADG +LYPAMPYPSYAK + E Sbjct: 137 PLKTPFGTLYSTNITPDAATGIGRYTFEQFDRAMRKGVAADGHNLYPAMPYPSYAKTTPE 196 Query: 150 DMRALYVYLMQAVTPLALPNRPLEMSFPFNQRWGMALWNMAFLQAGPFRPDPAQSAQWNR 209 DMRALYVYLM+ V P+ L N+PL MSFPFNQRWG+ W AFL+ PF+PD +QS WNR Sbjct: 197 DMRALYVYLMKGVAPVQLANKPLGMSFPFNQRWGLTFWKWAFLEDKPFQPDASQSPAWNR 256 Query: 210 GAYIVQGPGHCGACHTPRGIGMQEKTMSESGSNGPLFLSGETVENWRALDLRGRWQPADV 269 GAYIVQG GHCGACHTPRGIG QEKTM+E+G++G FL+GETVE WRAL LR W P DV Sbjct: 257 GAYIVQGMGHCGACHTPRGIGFQEKTMTEAGASGKYFLAGETVEGWRALSLRSLWTPQDV 316 Query: 270 AGLLRTGSNRFGTVAGNMVDVVQHSTQYMSDEDLLAIGTYLANTRTRASARRRP---PPH 326 A +L+TG NR G V+GNMVDVVQHSTQYM D DLLA+GTYL + + S + +P Sbjct: 317 AEMLKTGRNRHGIVSGNMVDVVQHSTQYMRDSDLLAVGTYLGSLPS--SDKDKPMQVAQG 374 Query: 327 PSPLPSRPTSTSRAAGWVTCSSVP--PVIVATATG-------CRGCSR 365 P+P P S++ + + + P P + T+ G C C R Sbjct: 375 PAPAIVAPGSSTASLATQSSAGSPDQPADLFTSRGGLGYLQFCADCHR 422 >ref|YP_145585.1| putative cytochrome C [Ralstonia metallidurans CH34] emb|CAI11237.1| putative cytochrome C [Cupriavidus metallidurans CH34] Length = 728 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 209/348 (60%), Positives = 253/348 (72%), Gaps = 17/348 (4%) Query: 33 AMPTSAASLS---DDLPSDFSDALDASTREQVLRGRYVARLGDCVACHTQDKRKPMAGGL 89 ++P++ A L DDLP++++ +D +TR QV RGRYVARLGDCVACHT DK KPMAGGL Sbjct: 32 SLPSAHAQLPQVIDDLPANYASGMDQATRAQVERGRYVARLGDCVACHTSDKTKPMAGGL 91 Query: 90 ALETPFGKLYSTNITPDRQTGIGQYSFAQFDRVMREGVTADGRHLYPAMPYPSYAKMSEE 149 L+TPFG LYSTNITPD TGIG+Y+F QFDR MR+GV ADG +LYPAMPYPSYAK + E Sbjct: 92 PLKTPFGTLYSTNITPDAATGIGRYTFEQFDRAMRKGVAADGHNLYPAMPYPSYAKTTPE 151 Query: 150 DMRALYVYLMQAVTPLALPNRPLEMSFPFNQRWGMALWNMAFLQAGPFRPDPAQSAQWNR 209 DMRALYVYLM+ V P+ L N+PL MSFPFNQRWG+ W AFL+ PF+PD +QS WNR Sbjct: 152 DMRALYVYLMKGVAPVQLANKPLGMSFPFNQRWGLTFWKWAFLEDKPFQPDASQSPAWNR 211 Query: 210 GAYIVQGPGHCGACHTPRGIGMQEKTMSESGSNGPLFLSGETVENWRALDLRGRWQPADV 269 GAYIVQG GHCGACHTPRGIG QEKTM+E+G++G FL+GETVE WRAL LR W P DV Sbjct: 212 GAYIVQGMGHCGACHTPRGIGFQEKTMTEAGASGKYFLAGETVEGWRALSLRSLWTPQDV 271 Query: 270 AGLLRTGSNRFGTVAGNMVDVVQHSTQYMSDEDLLAIGTYLANTRTRASARRRP---PPH 326 A +L+TG NR G V+GNMVDVVQHSTQYM D DLLA+GTYL + + S + +P Sbjct: 272 AEMLKTGRNRHGIVSGNMVDVVQHSTQYMRDSDLLAVGTYLGSLPS--SDKDKPMQVAQG 329 Query: 327 PSPLPSRPTSTSRAAGWVTCSSVP--PVIVATATG-------CRGCSR 365 P+P P S++ + + + P P + T+ G C C R Sbjct: 330 PAPAIVAPGSSTASLATQSSAGSPDQPADLFTSRGGLGYLQFCADCHR 377 >ref|ZP_04522159.1| cytochrome C [Burkholderia pseudomallei MSHR346] gb|EEP51073.1| cytochrome C [Burkholderia pseudomallei MSHR346] Length = 721 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 216/359 (60%), Positives = 247/359 (68%), Gaps = 11/359 (3%) Query: 14 LLLATLMLCSPLATAAPAIAMPTSAASLSDDLPSDFSDALDASTREQVLRGRYVARLGDC 73 L AT +P A + AA + DDLP+ + LDA+TR QV RGRYVARLGDC Sbjct: 16 LFTATAFAGTPPVGPASVPSTHAVAARIIDDLPARHAAGLDAATRAQVERGRYVARLGDC 75 Query: 74 VACHTQDKRKPMAGGLALETPFGKLYSTNITPDRQTGIGQYSFAQFDRVMREGVTADGRH 133 VACHT DK KP+AGGLAL TPFG+L+STNITPD QTGIG+Y+FAQFDR MR+GV ADGR Sbjct: 76 VACHTGDKSKPLAGGLALRTPFGELHSTNITPDPQTGIGRYTFAQFDRAMRKGVAADGRR 135 Query: 134 LYPAMPYPSYAKMSEEDMRALYVYLMQAVTPLALPNRPLEMSFPFNQRWGMALWNMAFLQ 193 LYPAMPYPSYAK++ EDMRALY YLM+ V P+ NR L + FPFNQRWG+ALWN AFL Sbjct: 136 LYPAMPYPSYAKVAAEDMRALYAYLMKGVAPVRQANRALALRFPFNQRWGLALWNWAFLD 195 Query: 194 AGPFRPDPAQSAQWNRGAYIVQGPGHCGACHTPRGIGMQEKTMSESGSNGPLFLSGETVE 253 PFRPD +SA+WNRGAYIVQG GHCGACHTPRG+G QEK MS +GS G FL+GETVE Sbjct: 196 DTPFRPDATRSAEWNRGAYIVQGLGHCGACHTPRGLGFQEKAMSGAGSAGRYFLAGETVE 255 Query: 254 NWRALDLRGRWQPADVAGLLRTGSNRFGTVAGNMVDVVQHSTQYMSDEDLLAIGTYLANT 313 WRAL LR W P D A +L+TG NR+G V+GNMVDVVQHSTQYMSD DLLA+G YL + Sbjct: 256 GWRALSLRALWTPQDTAEMLKTGRNRYGAVSGNMVDVVQHSTQYMSDGDLLAVGAYLESL 315 Query: 314 RTRASARRRPPPHPSPLPSRPTSTSRAAGWVTCSSVPPVIVATATG-------CRGCSR 365 A R P P P P SS P + T+ G C C R Sbjct: 316 ----PAAGRDKPMQVPQPPAPAIARAGPPAADISSRVPADLYTSRGGLAYLQFCNDCHR 370 >ref|ZP_04892708.1| cytochrome c family protein [Burkholderia pseudomallei Pasteur 52237] gb|EDO89546.1| cytochrome c family protein [Burkholderia pseudomallei Pasteur 52237] Length = 742 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 216/359 (60%), Positives = 247/359 (68%), Gaps = 11/359 (3%) Query: 14 LLLATLMLCSPLATAAPAIAMPTSAASLSDDLPSDFSDALDASTREQVLRGRYVARLGDC 73 L AT +P A + AA + DDLP+ + LDA+TR QV RGRYVARLGDC Sbjct: 37 LFTATAFAGTPPVGPASVPSTHAVAARIIDDLPARHAAGLDAATRAQVERGRYVARLGDC 96 Query: 74 VACHTQDKRKPMAGGLALETPFGKLYSTNITPDRQTGIGQYSFAQFDRVMREGVTADGRH 133 VACHT DK KP+AGGLAL TPFG+L+STNITPD QTGIG+Y+FAQFDR MR+GV ADGR Sbjct: 97 VACHTGDKSKPLAGGLALRTPFGELHSTNITPDPQTGIGRYTFAQFDRAMRKGVAADGRR 156 Query: 134 LYPAMPYPSYAKMSEEDMRALYVYLMQAVTPLALPNRPLEMSFPFNQRWGMALWNMAFLQ 193 LYPAMPYPSYAK++ EDMRALY YLM+ V P+ NR L + FPFNQRWG+ALWN AFL Sbjct: 157 LYPAMPYPSYAKVTAEDMRALYAYLMKGVAPVRQANRALALRFPFNQRWGLALWNWAFLD 216 Query: 194 AGPFRPDPAQSAQWNRGAYIVQGPGHCGACHTPRGIGMQEKTMSESGSNGPLFLSGETVE 253 PFRPD +SA+WNRGAYIVQG GHCGACHTPRG+G QEK MS +GS G FL+GETVE Sbjct: 217 DTPFRPDATRSAEWNRGAYIVQGLGHCGACHTPRGLGFQEKAMSGAGSAGRYFLAGETVE 276 Query: 254 NWRALDLRGRWQPADVAGLLRTGSNRFGTVAGNMVDVVQHSTQYMSDEDLLAIGTYLANT 313 WRAL LR W P D A +L+TG NR+G V+GNMVDVVQHSTQYMSD DLLA+G YL + Sbjct: 277 GWRALSLRALWTPQDTAEMLKTGRNRYGAVSGNMVDVVQHSTQYMSDGDLLAVGAYLESL 336 Query: 314 RTRASARRRPPPHPSPLPSRPTSTSRAAGWVTCSSVPPVIVATATG-------CRGCSR 365 A R P P P P SS P + T+ G C C R Sbjct: 337 ----PAAGRDKPMQVPQPPAPAIARAGPPAADISSRVPADLYTSRGGLAYLQFCNDCHR 391 >ref|ZP_02486514.1| cytochrome c family protein [Burkholderia pseudomallei 7894] Length = 721 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 215/359 (59%), Positives = 247/359 (68%), Gaps = 11/359 (3%) Query: 14 LLLATLMLCSPLATAAPAIAMPTSAASLSDDLPSDFSDALDASTREQVLRGRYVARLGDC 73 L AT +P A + AA + DDLP+ + LDA+TR QV RGRYVARLGDC Sbjct: 16 LFTATAFAGTPPVGPASVPSTHAVAARIIDDLPARHAAGLDAATRAQVERGRYVARLGDC 75 Query: 74 VACHTQDKRKPMAGGLALETPFGKLYSTNITPDRQTGIGQYSFAQFDRVMREGVTADGRH 133 VACHT DK KP+AGGLAL TPFG+L+STNITPD QTGIG+Y+FAQFDR MR+GV ADGR Sbjct: 76 VACHTGDKSKPLAGGLALRTPFGELHSTNITPDPQTGIGRYTFAQFDRAMRKGVAADGRR 135 Query: 134 LYPAMPYPSYAKMSEEDMRALYVYLMQAVTPLALPNRPLEMSFPFNQRWGMALWNMAFLQ 193 LYPAMPYPSYAK++ EDMRALY YLM+ V P+ NR L + FPFNQRWG+ALWN AFL Sbjct: 136 LYPAMPYPSYAKVAAEDMRALYAYLMKGVAPVRQANRALALRFPFNQRWGLALWNWAFLD 195 Query: 194 AGPFRPDPAQSAQWNRGAYIVQGPGHCGACHTPRGIGMQEKTMSESGSNGPLFLSGETVE 253 PF+PD +SA+WNRGAYIVQG GHCGACHTPRG+G QEK MS +GS G FL+GETVE Sbjct: 196 DTPFQPDATRSAEWNRGAYIVQGLGHCGACHTPRGLGFQEKAMSGAGSAGRYFLAGETVE 255 Query: 254 NWRALDLRGRWQPADVAGLLRTGSNRFGTVAGNMVDVVQHSTQYMSDEDLLAIGTYLANT 313 WRAL LR W P D A +L+TG NR+G V+GNMVDVVQHSTQYMSD DLLA+G YL + Sbjct: 256 GWRALSLRALWTPQDTAEMLKTGRNRYGAVSGNMVDVVQHSTQYMSDGDLLAVGAYLESL 315 Query: 314 RTRASARRRPPPHPSPLPSRPTSTSRAAGWVTCSSVPPVIVATATG-------CRGCSR 365 A R P P P P SS P + T+ G C C R Sbjct: 316 ----PAAGRDKPMQVPQPPAPAIARAGPPAADISSRVPADLYTSRGGLAYLQFCNDCHR 370