BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3170.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_201520.1| hypothetical protein XOO2881 [Xanthomonas oryza...   223   6e-57
ref|NP_644694.1| hypothetical protein XACa0008 [Xanthomonas axon...   223   8e-57
ref|YP_451761.1| hypothetical protein XOO_2732 [Xanthomonas oryz...   219   1e-55
ref|ZP_06730226.1| conserved hypothetical protein [Xanthomonas f...   217   4e-55
ref|YP_004747691.1| hypothetical protein Atc_0340 [Acidithiobaci...   149   1e-34

>ref|YP_201520.1| hypothetical protein XOO2881 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gb|AAW76135.1| hypothetical protein XOO2881 [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 160

 Score =  223 bits (569), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 109/125 (87%), Positives = 114/125 (91%)

Query: 1   MNDKTRTTPIAWLPQPEEHDYPAAQSYLNLLYDDAHCAELVRKLRAAPMSGFKAKDILRA 60
           M DKT    IAWL QPEEHDYPAAQSYLNLLYDDAHCA+LVR L AAPMS FKAKDILRA
Sbjct: 36  MGDKTDKNTIAWLAQPEEHDYPAAQSYLNLLYDDAHCAKLVRTLHAAPMSAFKAKDILRA 95

Query: 61  SGLSPLGVSNDHVEKDIKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYSIDEDASI 120
           SGLSPLG+SN HVE+D+KKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVY +DEDASI
Sbjct: 96  SGLSPLGMSNAHVERDLKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYRLDEDASI 155

Query: 121 PCKIV 125
           PCKIV
Sbjct: 156 PCKIV 160


>ref|NP_644694.1| hypothetical protein XACa0008 [Xanthomonas axonopodis pv. citri
           str. 306]
 gb|AAM39212.1| hypothetical protein XACa0008 [Xanthomonas axonopodis pv. citri
           str. 306]
 gb|EFW77742.1| hypothetical protein PsgB076_26945 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 125

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 111/125 (88%), Positives = 115/125 (92%)

Query: 1   MNDKTRTTPIAWLPQPEEHDYPAAQSYLNLLYDDAHCAELVRKLRAAPMSGFKAKDILRA 60
           M DKT    IAWL QPEEHDYPAAQSYLNLLYDDAHCA+LVRKL AAPMS FKAKDILRA
Sbjct: 1   MGDKTDKNTIAWLAQPEEHDYPAAQSYLNLLYDDAHCAKLVRKLHAAPMSAFKAKDILRA 60

Query: 61  SGLSPLGVSNDHVEKDIKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYSIDEDASI 120
           SGLSPLG+SN HVE+D+KKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYS DEDASI
Sbjct: 61  SGLSPLGMSNAHVERDLKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYSFDEDASI 120

Query: 121 PCKIV 125
           PCKIV
Sbjct: 121 PCKIV 125


>ref|YP_451761.1| hypothetical protein XOO_2732 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 ref|YP_001912919.1| hypothetical protein PXO_00080 [Xanthomonas oryzae pv. oryzae
           PXO99A]
 dbj|BAE69487.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gb|ACD58387.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 125

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 109/125 (87%), Positives = 114/125 (91%)

Query: 1   MNDKTRTTPIAWLPQPEEHDYPAAQSYLNLLYDDAHCAELVRKLRAAPMSGFKAKDILRA 60
           M DKT    IAWL QPEEHDYPAAQSYLNLLYDDAHCA+LVR L AAPMS FKAKDILRA
Sbjct: 1   MGDKTDKNTIAWLAQPEEHDYPAAQSYLNLLYDDAHCAKLVRTLHAAPMSAFKAKDILRA 60

Query: 61  SGLSPLGVSNDHVEKDIKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYSIDEDASI 120
           SGLSPLG+SN HVE+D+KKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVY +DEDASI
Sbjct: 61  SGLSPLGMSNAHVERDLKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYRLDEDASI 120

Query: 121 PCKIV 125
           PCKIV
Sbjct: 121 PCKIV 125


>ref|ZP_06730226.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gb|EFF48645.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 125

 Score =  217 bits (553), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 108/125 (86%), Positives = 112/125 (89%)

Query: 1   MNDKTRTTPIAWLPQPEEHDYPAAQSYLNLLYDDAHCAELVRKLRAAPMSGFKAKDILRA 60
           M DKT    IAWL QPEEHDYPAAQSYLNLLYDDAHC +LVRK+ AAPMS FKAKDILRA
Sbjct: 1   MGDKTDKNTIAWLAQPEEHDYPAAQSYLNLLYDDAHCTKLVRKMHAAPMSAFKAKDILRA 60

Query: 61  SGLSPLGVSNDHVEKDIKKIQSGTALSPLLLVRQEGQRTVVADGYHRLCAVYSIDEDASI 120
           SGLSPLG+SN HVE+DIKKIQS TALSPLLLVRQEGQR VVADGYHRLCAVYS DEDASI
Sbjct: 61  SGLSPLGMSNAHVERDIKKIQSSTALSPLLLVRQEGQRIVVADGYHRLCAVYSFDEDASI 120

Query: 121 PCKIV 125
           PCKIV
Sbjct: 121 PCKIV 125


>ref|YP_004747691.1| hypothetical protein Atc_0340 [Acidithiobacillus caldus SM-1]
 gb|AEK56991.1| conserved hypothetical protein [Acidithiobacillus caldus SM-1]
          Length = 125

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/120 (62%), Positives = 89/120 (74%), Gaps = 1/120 (0%)

Query: 6   RTTPIAWLPQPEEHDYPAAQSYLNLLYDDAHCAELVRKLRAAPMSGFKAKDILRASGLSP 65
           ++  + WL +PE HDYPAAQSYL+LL+D AH A+ V  L  A M+ F AKDI RASG S 
Sbjct: 4   KSAAVVWLEEPEGHDYPAAQSYLSLLFDPAHAAQWVADLVRADMTRFYAKDIFRASGASL 63

Query: 66  LGVSNDHVEKDIKKIQSGTALSPLLLVRQ-EGQRTVVADGYHRLCAVYSIDEDASIPCKI 124
           LGVSN HV+KD++KI+ G ALSPLLLVR     R ++ADGYHRLCAVY  DEDA IP KI
Sbjct: 64  LGVSNSHVQKDVRKIRKGVALSPLLLVRDPRATRLIIADGYHRLCAVYRFDEDAMIPAKI 123