BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3169.p (471 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CCA88224.1| sensor protein, histidine kinase [Ralstonia syzy... 404 e-110 ref|YP_003750030.1| sensor protein, histidine kinase [Ralstonia ... 403 e-110 emb|CCA83521.1| sensor protein, histidine kinase [blood disease ... 398 e-108 ref|YP_114747.1| sensor histidine kinase [Methylococcus capsulat... 393 e-107 ref|NP_522604.1| two-component sensor histidine kinase transcrip... 392 e-106 >emb|CCA88224.1| sensor protein, histidine kinase [Ralstonia syzygii R24] Length = 466 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 242/463 (52%), Positives = 318/463 (68%), Gaps = 2/463 (0%) Query: 3 MGFRKRLLLVHMLAVVLIVTCAAATGWWLLSQSVLGQLDAALLALGETEAGLLAEGAPDA 62 + ++RL+LVH+ +V+IV A+ WW LS+SV QLD ALLAL ETEAG+L E Sbjct: 2 LSVQRRLMLVHLAVIVVIVASTASAAWWQLSRSVHRQLDGALLALAETEAGMLLENRGQP 61 Query: 63 IHVHEPRAGTAPPSLVRLDRLVQIIDADGQVLARSNNLGAGTLPVSADLLKRLKGGQTVF 122 + VHE GTAPPSLVRLDRLVQI+DA+G+VLARS NLGA LP +LL RL G+TVF Sbjct: 62 VRVHEKPVGTAPPSLVRLDRLVQIVDANGKVLARSANLGATQLPTPPNLLARLSAGETVF 121 Query: 123 ETLPKASEEPLRMAAVPVKL-GERRFAVLVAGSLDDADHIVESAALLFGGLAVALLLALA 181 ETLP SEEPLRMA++PV+ G A+ VAGSLDD + +++SAALLF LA+AL ++ Sbjct: 122 ETLPSFSEEPLRMASLPVQAAGAAPVAIQVAGSLDDVNRVLDSAALLFACLAIALSASVG 181 Query: 182 VAGAILTGRLFGTVERIAAQARRISDASLGERLAHPGSDDEIGHLVDTLNSMLARLQRAF 241 AGA+LT R+F ++ + QARRI +A+L RL HPG+ D+IG LVDTLN ML RL+ AF Sbjct: 182 TAGAMLTRRVFRAIDNVVKQARRIGNANLDARLPHPGTADDIGRLVDTLNDMLDRLEHAF 241 Query: 242 ELQRNFTANAAHEIRSPLSRLRTEIELSLRRPRSVQEQVATLQSCLEEVAGLTSMVEELL 301 + QR+FTA+A+HE+RSPLSRLRTEIE++LRR RS ++ V TL+SCLEEV LT +VEELL Sbjct: 242 DAQRHFTADASHELRSPLSRLRTEIEVTLRRERSSEDYVETLRSCLEEVERLTLLVEELL 301 Query: 302 QLARLDAGQESRQPERIALDEVMREAIARWQGTAAARRIRLELLAPETVHASVGERAALL 361 LARLDAG E + +A+ ++ +++ R Q A AR +RL + V A L Sbjct: 302 MLARLDAGLERGSQDAVAVAALVEDSVRRVQSAAHARLVRLVVGTGPAQPVKVARGPASL 361 Query: 362 VLNNLLDNAIKFSAPDSAVEIRVFAEGGGATLEVLDRGPGIASGDQPQLFERFYRGRASQ 421 L NLLDNA+KFS + V+I + A L+V D+GPGI + P +F+RFYRG ++ Sbjct: 362 ALVNLLDNAVKFSPQGTRVDISWTIDREQAVLKVADQGPGIPEHELPHVFDRFYRGAGAR 421 Query: 422 QGQTSGAGLGLAIVRAVLDGYGASITLSNRGDGMGAACRLHFP 464 G G GLGLA+ RA++ +G SI + N G GA ++ P Sbjct: 422 AGTVEGTGLGLALSRAIVLAHGGSIDVENAPSG-GAIFQVRLP 463 >ref|YP_003750030.1| sensor protein, histidine kinase [Ralstonia solanacearum PSI07] emb|CBJ35405.1| Sensor protein, histidine kinase [Ralstonia solanacearum PSI07] Length = 466 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 242/463 (52%), Positives = 318/463 (68%), Gaps = 2/463 (0%) Query: 3 MGFRKRLLLVHMLAVVLIVTCAAATGWWLLSQSVLGQLDAALLALGETEAGLLAEGAPDA 62 + ++RL+LVH+ +V+IV A+ WW LS+SV QLD ALLAL ETEAG+L E Sbjct: 2 LSVQRRLMLVHLAVIVVIVASTASAAWWQLSRSVHRQLDGALLALAETEAGMLLENRGQP 61 Query: 63 IHVHEPRAGTAPPSLVRLDRLVQIIDADGQVLARSNNLGAGTLPVSADLLKRLKGGQTVF 122 + VHE GTAPPSLVRLDRLVQI+DA+G+VLARS NLGA LP +LL RL G+TVF Sbjct: 62 VRVHEKPVGTAPPSLVRLDRLVQIVDANGKVLARSANLGATQLPTPPNLLARLSAGETVF 121 Query: 123 ETLPKASEEPLRMAAVPVKL-GERRFAVLVAGSLDDADHIVESAALLFGGLAVALLLALA 181 ETLP SEEPLRMA++PV+ G A+ VAGSLDD + +++SAALLF LA+AL ++ Sbjct: 122 ETLPSFSEEPLRMASLPVQAAGAAPVAIQVAGSLDDVNRVLDSAALLFACLAIALSASVG 181 Query: 182 VAGAILTGRLFGTVERIAAQARRISDASLGERLAHPGSDDEIGHLVDTLNSMLARLQRAF 241 AGA+LT R+F ++ + QARRI +A+L RL HPG+ D+IG LVDTLN ML RL+ AF Sbjct: 182 TAGAMLTRRVFRAIDNVVKQARRIGNANLDARLPHPGTADDIGRLVDTLNDMLDRLEHAF 241 Query: 242 ELQRNFTANAAHEIRSPLSRLRTEIELSLRRPRSVQEQVATLQSCLEEVAGLTSMVEELL 301 + QR+FTA+A+HE+RSPLSRLRTEIE++LRR RS ++ V TL+SCLEEV LT +VEELL Sbjct: 242 DAQRHFTADASHELRSPLSRLRTEIEVTLRRERSSEDYVETLRSCLEEVERLTLLVEELL 301 Query: 302 QLARLDAGQESRQPERIALDEVMREAIARWQGTAAARRIRLELLAPETVHASVGERAALL 361 LARLDAG E + +A+ ++ +++ R Q A AR +RL + V A L Sbjct: 302 MLARLDAGLERGSQDAVAVAALVEDSVRRVQSAAHARLVRLVVGPGPAQPLKVARGPASL 361 Query: 362 VLNNLLDNAIKFSAPDSAVEIRVFAEGGGATLEVLDRGPGIASGDQPQLFERFYRGRASQ 421 L NLLDNA+KFS + V+I + A L+V D+GPGI + P +F+RFYRG ++ Sbjct: 362 ALVNLLDNAVKFSPQGTRVDISWTIDREQAVLKVADQGPGIPEHELPHVFDRFYRGAGAR 421 Query: 422 QGQTSGAGLGLAIVRAVLDGYGASITLSNRGDGMGAACRLHFP 464 G G GLGLA+ RA++ +G SI + N G GA ++ P Sbjct: 422 AGTVEGTGLGLALSRAIVLAHGGSIDVENAPSG-GAIFQVRLP 463 >emb|CCA83521.1| sensor protein, histidine kinase [blood disease bacterium R229] Length = 468 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 243/465 (52%), Positives = 319/465 (68%), Gaps = 4/465 (0%) Query: 3 MGFRKRLLLVHMLAVVLIVTCAAATGWWLLSQSVLGQLDAALLALGETEAGLLAEGAPDA 62 + ++RL+LVH+ +V+IV A+ WW LS+SV QLD ALLAL ETEAG+L E Sbjct: 2 LSVQRRLMLVHLAVIVVIVASTASAAWWQLSRSVHRQLDGALLALAETEAGMLLENRGQP 61 Query: 63 IHVHEPRAGTAPPSLVRLDRLVQIIDADGQVLARSNNLGAGTLPVSADLLKRLKGGQTVF 122 + VHE GTAPPSLVRLDRLVQI+DA+G+VLARS NLGA LP +LL RL G+TVF Sbjct: 62 VRVHEKPVGTAPPSLVRLDRLVQIVDANGKVLARSANLGATQLPTPPNLLARLSAGETVF 121 Query: 123 ETLPKASEEPLRMAAVPVKL-GERRFAVLVAGSLDDADHIVESAALLFGGLAVALLLALA 181 ETLP SEEPLRMA++PV+ G A+ VAGSLDD + +++SAALLF LA+AL ++ Sbjct: 122 ETLPSFSEEPLRMASLPVQAAGAAPVAIQVAGSLDDVNRVLDSAALLFACLAIALSASVG 181 Query: 182 VAGAILTGRLFGTVERIAAQARRISDASLGERLAHPGSDDEIGHLVDTLNSMLARLQRAF 241 AGA+LT R+F ++ + QARRI +A+L RL HPG+ D+IG LVDTLN ML RL+ AF Sbjct: 182 TAGAMLTRRVFRAIDNVVKQARRIGNANLDARLPHPGTADDIGRLVDTLNDMLDRLEHAF 241 Query: 242 ELQRNFTANAAHEIRSPLSRLRTEIELSLRRPRSVQEQVATLQSCLEEVAGLTSMVEELL 301 + QR+FTA+A+HE+RSPLSRLRTEIE++LRR RS ++ V TL+SCLEEV LT +VEELL Sbjct: 242 DAQRHFTADASHELRSPLSRLRTEIEVTLRRERSSEDYVETLRSCLEEVERLTLLVEELL 301 Query: 302 QLARLDAGQE--SRQPERIALDEVMREAIARWQGTAAARRIRLELLAPETVHASVGERAA 359 LARLDAG E S+ +A+ ++ +++ R Q A AR +RL + V A Sbjct: 302 MLARLDAGLERGSQDAVAVAVAALVEDSVRRVQSAAHARLVRLVVGPGPAQPLKVARGPA 361 Query: 360 LLVLNNLLDNAIKFSAPDSAVEIRVFAEGGGATLEVLDRGPGIASGDQPQLFERFYRGRA 419 L L NLLDNA+KFS + V+I + A L+V D+GPGI + P +F+RFYRG Sbjct: 362 SLALVNLLDNAVKFSPQGTRVDISWTIDREQAVLKVADQGPGIPEHELPHVFDRFYRGAG 421 Query: 420 SQQGQTSGAGLGLAIVRAVLDGYGASITLSNRGDGMGAACRLHFP 464 ++ G G GLGLA+ RA++ +G SI + N G GA ++ P Sbjct: 422 ARAGTVEGTGLGLALSRAIVLAHGGSIDVENAPSG-GAIFQVRLP 465 >ref|YP_114747.1| sensor histidine kinase [Methylococcus capsulatus str. Bath] gb|AAU91533.1| sensor histidine kinase [Methylococcus capsulatus str. Bath] Length = 466 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 234/466 (50%), Positives = 313/466 (67%), Gaps = 1/466 (0%) Query: 1 MSMGFRKRLLLVHMLAVVLIVTCAAATGWWLLSQSVLGQLDAALLALGETEAGLLAEGAP 60 M +G R RL+LVH+ VV+++ C+AA +W+L Q+V +LDAALLAL ETE +L EG Sbjct: 1 MILGLRARLILVHLAVVVIVLACSAAGAYWMLRQAVHSRLDAALLALAETERAMLLEGGE 60 Query: 61 DAIHVHEPRAGTAPPSLVRLDRLVQIIDADGQVLARSNNLGAGTLPVSADLLKRLKGGQT 120 +I +HE G APPS +RLDRLVQI+D DG+VLARS NLG LP LL RL G+T Sbjct: 61 QSIKIHEAAPGPAPPSFIRLDRLVQIVDGDGRVLARSANLGTARLPSPPGLLSRLSRGET 120 Query: 121 VFETLPKASEEPLRMAAVPVKLGERRFAVLVAGSLDDADHIVESAALLFGGLAVALLLAL 180 VF+TLP EEP+RM ++PV+ R A+ VAGSLDDA ++++SA LLF + LL+A+ Sbjct: 121 VFDTLPAFGEEPVRMVSIPVRKDGSRLAIQVAGSLDDARNVMKSAGLLFIVMTSGLLVAV 180 Query: 181 AVAGAILTGRLFGTVERIAAQARRISDASLGERLAHPGSDDEIGHLVDTLNSMLARLQRA 240 +AG LT R F ++ + QARRI +A+LGERL HPGS DEIG LVDTLN ML RL+R+ Sbjct: 181 GIAGTSLTRRAFHAIDEVVRQARRIGEANLGERLPHPGSRDEIGRLVDTLNEMLGRLERS 240 Query: 241 FELQRNFTANAAHEIRSPLSRLRTEIELSLRRPRSVQEQVATLQSCLEEVAGLTSMVEEL 300 FE+QR FTA+A+HE+RSPLSRLR E+E++LRRPR E TL SCLEEV LT +VE L Sbjct: 241 FEVQRRFTADASHELRSPLSRLRAELEITLRRPRRPDEYERTLHSCLEEVERLTQLVEAL 300 Query: 301 LQLARLDAGQESRQPERIALDEVMREAIARWQGTAAARRIRLELLAPETVHASVGERAAL 360 L+LARLDA QE+ E + L+ V+ E + R Q A R I + + + V A V + Sbjct: 301 LELARLDAQQEAIPGENVCLNTVLAEVVRRQQPLAQERSIGIVVETSQPVTAWVSGASIG 360 Query: 361 LVLNNLLDNAIKFSAPDSAVEIRVFAEGGGATLEVLDRGPGIASGDQPQLFERFYRGRAS 420 +V +N+L+NA+KFS P V I + A+ A + + D GPGI G++ +LFERF+RG + Sbjct: 361 VVFSNVLENALKFSPPGGTVHIGLAADAREAVVSICDNGPGIEPGEKDRLFERFFRGSVA 420 Query: 421 QQGQTSGAGLGLAIVRAVLDGYGASITLSNRGDGMGAACRLHFPDG 466 + G G GLGLA+ +A++ G +I +N G GA + P G Sbjct: 421 RSGAMPGTGLGLALSQALVRHCGGTIEATNIPGG-GARFTIRLPLG 465 >ref|NP_522604.1| two-component sensor histidine kinase transcription regulator protein [Ralstonia solanacearum GMI1000] emb|CAD18194.1| probable two-component sensor histidine kinase transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 466 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 244/463 (52%), Positives = 313/463 (67%), Gaps = 2/463 (0%) Query: 3 MGFRKRLLLVHMLAVVLIVTCAAATGWWLLSQSVLGQLDAALLALGETEAGLLAEGAPDA 62 + ++RL+LVH+ + +IV AA+ WW LS+SV QLD ALLAL ETEAG+L E Sbjct: 2 LSVQRRLMLVHLAVIAVIVASAASAAWWQLSRSVHRQLDGALLALAETEAGMLLENRGQP 61 Query: 63 IHVHEPRAGTAPPSLVRLDRLVQIIDADGQVLARSNNLGAGTLPVSADLLKRLKGGQTVF 122 + VHE GTAPPSLVRLDRLVQI+DA G+VLA S NLGA LP A LL RL G+TVF Sbjct: 62 VRVHEKPVGTAPPSLVRLDRLVQIVDAHGEVLAHSANLGATRLPTPASLLVRLAAGETVF 121 Query: 123 ETLPKASEEPLRMAAVPVKLG-ERRFAVLVAGSLDDADHIVESAALLFGGLAVALLLALA 181 ETLP SEEPLRM ++PV+ G AV VAGSLDD + +++SAALLF LA+AL ++ Sbjct: 122 ETLPSFSEEPLRMVSLPVQTGGAAPVAVQVAGSLDDVNGVLDSAALLFACLAIALSASVG 181 Query: 182 VAGAILTGRLFGTVERIAAQARRISDASLGERLAHPGSDDEIGHLVDTLNSMLARLQRAF 241 AGA+LT R+F ++ + QARRI DA+L RL HPG+ D+IG LVDTLN ML RL+ AF Sbjct: 182 TAGALLTRRVFRAIDNVVKQARRIGDANLDARLPHPGTADDIGRLVDTLNDMLDRLEHAF 241 Query: 242 ELQRNFTANAAHEIRSPLSRLRTEIELSLRRPRSVQEQVATLQSCLEEVAGLTSMVEELL 301 + QR+FTA+A+HE+RSPLSRLRTEIE++LRR RS ++ V TL+SCLEEVA LT +VEELL Sbjct: 242 DAQRHFTADASHELRSPLSRLRTEIEITLRRERSREDYVETLRSCLEEVARLTLLVEELL 301 Query: 302 QLARLDAGQESRQPERIALDEVMREAIARWQGTAAARRIRLELLAPETVHASVGERAALL 361 LARLDAGQE + +++ ++ +++ R Q A R IRL + A V A L Sbjct: 302 MLARLDAGQERGSQDAVSVATLVEDSVRRMQPAAHERLIRLVVGAGSAPAIKVARGPASL 361 Query: 362 VLNNLLDNAIKFSAPDSAVEIRVFAEGGGATLEVLDRGPGIASGDQPQLFERFYRGRASQ 421 L NLLDNA+KFS S V+I + A L+V D GPGI + P +F+RFYRG ++ Sbjct: 362 ALANLLDNAVKFSPQGSQVDISWTIDREQAVLKVSDHGPGIPDHELPHVFDRFYRGAGAR 421 Query: 422 QGQTSGAGLGLAIVRAVLDGYGASITLSNRGDGMGAACRLHFP 464 G G GLGLA+ A++ +G I + N G GA + P Sbjct: 422 AGTAEGTGLGLALSSAIVLAHGGRIDVENAPAG-GAVFLVRLP 463